Lsi07G013240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G013240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA binding protein, putative
Location	chr07 : 19428706 .. 19429554 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGATTACTTGGTTTGGTATTGGATCATGATGATATGGATTCAGATCGATCAGTGGGAAAGAAATTGGATATTGGATTCACTGGAACCACCAAACAATGGGATGATACATTTGGTACAAGGCATTGGAAGGTTGGAGCAATGTATAGAGACCTGGCTCCTCGTATCGAAGGTGTTGTAAAGAGCGGTGGATGTAATGCTCGTATTAGGTCTAAAGACATGGTAAAAAGTGGCGGATGTAGTGGTGGTATAGAAGGCGAAGACTTGGTAAAGAGCAATGGATGCATTGCTGCTACTGGGTGCGGAAGCAAGATAAAGAGCGGTGGATGCACTGCTCCTGCTGGGTGCGGAAGCAAGGTGAAGAGCGGTGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGCACTGGGTGCGGAAGCATGGTAAAGAGCGGTGGATGCACTGTTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGGTGGGGGAGCATTGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGATGGGGGAGCATGGTAAAGAGCGGTGGGTGTACTGCTGCTGCTGGGTGCGGGAGCACGGTAAAGAGCAGTGGATGCACTGCTGCTGCTGGGTGTGGGAGCAAGGTAAAGAGCGGTGGGTGCACTGCTGCTGCTAGGTGCAGAAGTACGACAAAGAGCAATGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAATGAATGGTGGATGCACTACTGATGCTGGATGCGAAAGCACAATAAAGAGCAGTGGTGCACTGCTGGTGCTGGGTGCAAAGACAACATAA

mRNA sequence

ATGAAAAGATTACTTGGTTTGGTATTGGATCATGATGATATGGATTCAGATCGATCAGTGGGAAAGAAATTGGATATTGGATTCACTGGAACCACCAAACAATGGGATGATACATTTGGTACAAGGCATTGGAAGGTTGGAGCAATGTATAGAGACCTGGCTCCTCGTATCGAAGGTGTTGTAAAGAGCGGTGGATGTAATGCTCGTATTAGGTCTAAAGACATGGTAAAAAGTGGCGGATGTAGTGGTGGTATAGAAGGCGAAGACTTGGTAAAGAGCAATGGATGCATTGCTGCTACTGGGTGCGGAAGCAAGATAAAGAGCGGTGGATGCACTGCTCCTGCTGGGTGCGGAAGCAAGGTGAAGAGCGGTGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGCACTGGGTGCGGAAGCATGGTAAAGAGCGGTGGATGCACTGTTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGGTGGGGGAGCATTGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGATGGGGGAGCATGGTAAAGAGCGGTGGGTGTACTGCTGCTGCTGGGTGCGGGAGCACGGTAAAGAGCAGTGGATGCACTGCTGCTGCTGGGTGTGGGAGCAAGGTAAAGAGCGGTGGGTGCACTGCTGCTGCTAGGTGCAGAAGTACGACAAAGAGCAATGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAATGAATGGTGGATGCACTACTGATGCTGGATGCGAAAGCACAATAAAGAGCAGTGGTGCACTGCTGGTGCTGGGTGCAAAGACAACATAA

Coding sequence (CDS)

ATGAAAAGATTACTTGGTTTGGTATTGGATCATGATGATATGGATTCAGATCGATCAGTGGGAAAGAAATTGGATATTGGATTCACTGGAACCACCAAACAATGGGATGATACATTTGGTACAAGGCATTGGAAGGTTGGAGCAATGTATAGAGACCTGGCTCCTCGTATCGAAGGTGTTGTAAAGAGCGGTGGATGTAATGCTCGTATTAGGTCTAAAGACATGGTAAAAAGTGGCGGATGTAGTGGTGGTATAGAAGGCGAAGACTTGGTAAAGAGCAATGGATGCATTGCTGCTACTGGGTGCGGAAGCAAGATAAAGAGCGGTGGATGCACTGCTCCTGCTGGGTGCGGAAGCAAGGTGAAGAGCGGTGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGCACTGGGTGCGGAAGCATGGTAAAGAGCGGTGGATGCACTGTTGCTGCTGGGTGCGGAAGCACGGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGGTGGGGGAGCATTGTAAAGAGCGGTGGATGTACTGTTGCTGCTGGATGGGGGAGCATGGTAAAGAGCGGTGGGTGTACTGCTGCTGCTGGGTGCGGGAGCACGGTAAAGAGCAGTGGATGCACTGCTGCTGCTGGGTGTGGGAGCAAGGTAAAGAGCGGTGGGTGCACTGCTGCTGCTAGGTGCAGAAGTACGACAAAGAGCAATGGATGCACTGCTGCTGCTGGGTGCGGAAGCACGGTAATGAATGGTGGATGCACTACTGATGCTGGATGCGAAAGCACAATAAAGAGCAGTGGTGCACTGCTGGTGCTGGGTGCAAAGACAACATAA

Protein sequence

MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAPRIEGVVKSGGCNARIRSKDMVKSGGCSGGIEGEDLVKSNGCIAATGCGSKIKSGGCTAPAGCGSKVKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCGSTVKSGGCTVAAGWGSIVKSGGCTVAAGWGSMVKSGGCTAAAGCGSTVKSSGCTAAAGCGSKVKSGGCTAAARCRSTTKSNGCTAAAGCGSTVMNGGCTTDAGCESTIKSSGALLVLGAKTT

Homology

[Close]

BLAST of Lsi07G013240 vs. Swiss-Prot
Match: GRDP1_ARATH (Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAP 56
           M +L+G VL+HDD DSDR  GKKLD GF+ TT QW++TFGTR+WK GAM+R   P
Sbjct: 242 MVKLIGKVLEHDDTDSDRGKGKKLDTGFSKTTAQWEETFGTRYWKAGAMHRGKTP 296

[Close]

BLAST of Lsi07G013240 vs. Swiss-Prot
Match: GRDP2_ARATH (Glycine-rich domain-containing protein 2 OS=Arabidopsis thaliana GN=GRDP2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAPR 57
           + +++G VL+HDD DSDRS GKKLD GF+GTT QW++TFG R+WK GAM R   P+
Sbjct: 240 LTKMIGKVLEHDDTDSDRSKGKKLDTGFSGTTAQWEETFGRRYWKAGAMNRGNTPK 295

[Close]

BLAST of Lsi07G013240 vs. TrEMBL
Match: W9RQG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016112 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 75/215 (34.88%), Postives = 113/215 (52.56%), Query Frame = 1


Query: 64  GGCNARIRSKDMVKSGGCSGGIEGEDLVKSNGC-----IAATGCGSKIKSGGCTAPAGCG 123
           GGC +   +K  V S GC   +  E     +GC       ++GCG+K+ + G    +GCG
Sbjct: 704 GGCGSGCGNK--VNSAGCGNKVNTEGSGCGSGCGNKVTTGSSGCGNKVNADGSGCGSGCG 763

Query: 124 SKVKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCGSTVKSGGCTVAAGWGSIV 183
           +KV +GG    +GCG+ V  GG +GC +MV + G    +GCG+ V  GG    +G GS V
Sbjct: 764 NKVSAGGSGCGSGCGNKVSDGG-SGCENMVSADGSGCGSGCGNKVSDGGSGCGSGCGSKV 823

Query: 184 KSGGCTVAAGWGSMVKSGGCTAAAGCGSTVKSSGCTAAAGCGSKVKSGGCTAAARCRSTT 243
            +GG    +G G+ V  GG    +GCGS V + G    +GCG+KV +GG    + C +  
Sbjct: 824 TAGG----SGCGTKVSDGG----SGCGSKVSAGGSGCGSGCGNKVSAGGSGCGSGCGTKV 883

Query: 244 KSNGCTAAAGCGSTVMNGGCTTDAGCESTIKSSGA 274
            + G    +GCG+ V  GG    +GC + + + G+
Sbjct: 884 SAGGSGCGSGCGTKVTAGGSGCGSGCGNKVSAGGS 907

[Close]

BLAST of Lsi07G013240 vs. TrEMBL
Match: M5W7C6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001356mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAPRIEGV 60
           +  LLG VL+HDDMDSDR+ GKKLD+GF+GTTKQW++ FGTR+WK GAMYR  AP     
Sbjct: 239 LNELLGKVLEHDDMDSDRTKGKKLDVGFSGTTKQWEEAFGTRYWKAGAMYRGSAP---CP 298

Query: 61  VKSGGCNARIRSKDMVKS 79
           V +    + + SKD+V S
Sbjct: 299 VTTTPYKSSVMSKDVVAS 313

[Close]

BLAST of Lsi07G013240 vs. TrEMBL
Match: B9SMJ6_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0230330 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAP 56
           +   LG +L+HDDMDSDR+ GKKLD+GF+GTTKQW++TFGTR+WK GAMYR   P
Sbjct: 238 LSEALGKILEHDDMDSDRTKGKKLDVGFSGTTKQWEETFGTRYWKAGAMYRGSGP 292

[Close]

BLAST of Lsi07G013240 vs. TrEMBL
Match: A0A072UF22_MEDTR (DNA-binding protein, putative OS=Medicago truncatula GN=MTR_5g030890 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAP 56
           +   LG +L+HDD DSDR+ GKKLD+GF+GTTKQW+DTFGTR+WK GAMY+  AP
Sbjct: 198 LNEALGKILEHDDTDSDRTKGKKLDVGFSGTTKQWEDTFGTRYWKAGAMYKGNAP 252

[Close]

BLAST of Lsi07G013240 vs. TrEMBL
Match: A0A0A0L5L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G033730 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAP 56
           +K++LG+VL+HDD DSDR+ GKKLD GF+GTTKQW+DTFGTR+W+ G MYR   P
Sbjct: 239 LKKILGVVLEHDDTDSDRTKGKKLDNGFSGTTKQWEDTFGTRYWRAGVMYRGNCP 293

[Close]

BLAST of Lsi07G013240 vs. TAIR10
Match: AT2G22660.2 (AT2G22660.2 Protein of unknown function (duplicated DUF1399))

HSP 1 Score: 82.0 bits (201), Expect = 6.3e-16
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAP 56
           M +L+G VL+HDD DSDR  GKKLD GF+ TT QW++TFGTR+WK GAM+R   P
Sbjct: 242 MVKLIGKVLEHDDTDSDRGKGKKLDTGFSKTTAQWEETFGTRYWKAGAMHRGKTP 296

[Close]

BLAST of Lsi07G013240 vs. TAIR10
Match: AT4G37900.1 (AT4G37900.1 Protein of unknown function (duplicated DUF1399))

HSP 1 Score: 81.6 bits (200), Expect = 8.3e-16
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAPR 57
           + +++G VL+HDD DSDRS GKKLD GF+GTT QW++TFG R+WK GAM R   P+
Sbjct: 240 LTKMIGKVLEHDDTDSDRSKGKKLDTGFSGTTAQWEETFGRRYWKAGAMNRGNTPK 295

[Close]

BLAST of Lsi07G013240 vs. NCBI nr
Match: gi|970009591|ref|XP_015065683.1| (PREDICTED: glycine-rich domain-containing protein 2-like isoform X2 [Solanum pennellii])

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 100/256 (39.06%), Postives = 130/256 (50.78%), Query Frame = 1


Query: 53  LAPRIEGVVKSGGCNARIRSKDMVKSG--GCSGGIEGEDLVKSNGCIAATGCGSKIKSGG 112
           +AP  E +  SGGC       +++K G  G  G + G  L KS GC    GCGS ++SGG
Sbjct: 702 VAPVNEAI--SGGCG------NLMKRGAYGSCGAVFGNKL-KSGGC----GCGSMLESGG 761

Query: 113 C----------TAPAGCGSKVKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCG 172
           C              GCGS ++SGGC    G G     GG  GCGSM++SGGC    GCG
Sbjct: 762 CGGCGGSGCGGCGGGGCGSMLESGGCGGCGGSGCGGCGGG--GCGSMLESGGCG-GGGCG 821

Query: 173 STVKSGGC-------TVAAGWGSIVKSGGCTVAAGWGSMVKSGGC-------TAAAGCGS 232
           S ++SGGC           G GS+++SGGC    G GSM++SGGC           GCGS
Sbjct: 822 SMLESGGCGGSGCGGCGGGGCGSMLESGGCG-GGGCGSMLESGGCGGSGCGGCGGGGCGS 881

Query: 233 TVKSSGCTAAAGCGSKVKSGGCTAAAR-------CRSTTKSNGC-TAAAGCGSTVMNGGC 273
            ++S GC    GCGS ++SGGC  +         C S  KS GC     GCG+ + +GGC
Sbjct: 882 MLESGGC-GGGGCGSMLESGGCGGSGCGGCGGGGCGSMLKSGGCGGGGCGCGNRLESGGC 939

[Close]

BLAST of Lsi07G013240 vs. NCBI nr
Match: gi|970009589|ref|XP_015065682.1| (PREDICTED: glycine-rich domain-containing protein 2-like isoform X1 [Solanum pennellii])

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 100/256 (39.06%), Postives = 130/256 (50.78%), Query Frame = 1


Query: 53  LAPRIEGVVKSGGCNARIRSKDMVKSG--GCSGGIEGEDLVKSNGCIAATGCGSKIKSGG 112
           +AP  E +  SGGC       +++K G  G  G + G  L KS GC    GCGS ++SGG
Sbjct: 702 VAPVNEAI--SGGCG------NLMKRGAYGSCGAVFGNKL-KSGGC----GCGSMLESGG 761

Query: 113 C----------TAPAGCGSKVKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCG 172
           C              GCGS ++SGGC    G G     GG  GCGSM++SGGC    GCG
Sbjct: 762 CGGCGGSGCGGCGGGGCGSMLESGGCGGCGGSGCGGCGGG--GCGSMLESGGCG-GGGCG 821

Query: 173 STVKSGGC-------TVAAGWGSIVKSGGCTVAAGWGSMVKSGGC-------TAAAGCGS 232
           S ++SGGC           G GS+++SGGC    G GSM++SGGC           GCGS
Sbjct: 822 SMLESGGCGGSGCGGCGGGGCGSMLESGGCG-GGGCGSMLESGGCGGSGCGGCGGGGCGS 881

Query: 233 TVKSSGCTAAAGCGSKVKSGGCTAAAR-------CRSTTKSNGC-TAAAGCGSTVMNGGC 273
            ++S GC    GCGS ++SGGC  +         C S  KS GC     GCG+ + +GGC
Sbjct: 882 MLESGGC-GGGGCGSMLESGGCGGSGCGGCGGGGCGSMLKSGGCGGGGCGCGNRLESGGC 939

[Close]

BLAST of Lsi07G013240 vs. NCBI nr
Match: gi|970009593|ref|XP_015065684.1| (PREDICTED: glycine-rich domain-containing protein 2-like isoform X3 [Solanum pennellii])

HSP 1 Score: 96.7 bits (239), Expect = 7.0e-17
Identity = 96/224 (42.86%), Postives = 123/224 (54.91%), Query Frame = 1


Query: 61  VKSGGCNARIRSKDMVKSGGCSGGIEGEDLVKSNGCIAATGCGSKIKSGGCTAPAGCGSK 120
           +KSGGC        M++SGGC GG  G       GC    GCGS ++SGGC    GCGS 
Sbjct: 733 LKSGGCGCG----SMLESGGC-GGCGGSGC---GGC-GGGGCGSMLESGGCGG-GGCGSM 792

Query: 121 VKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCGSTVKSGGC-------TVAAG 180
           ++SGGC   +GCG     GG  GCGSM++SGGC    GCGS ++SGGC           G
Sbjct: 793 LESGGC-GGSGCGGC--GGG--GCGSMLESGGCG-GGGCGSMLESGGCGGSGCGGCGGGG 852

Query: 181 WGSIVKSGGCTVAAGWGSMVKSGGCTAAAGCGSTVKSSGCTAAAGCGSKVKSGGC-TAAA 240
            GS+++SGGC    G GSM++SGGC   +GCG      GC    GCGS +KSGGC     
Sbjct: 853 CGSMLESGGCG-GGGCGSMLESGGC-GGSGCG------GC-GGGGCGSMLKSGGCGGGGC 912

Query: 241 RCRSTTKSNGC--TAAAGCGSTVMNGGC--TTDAGCESTIKSSG 273
            C +  +S GC      GCG+ + +GGC      GC + ++S G
Sbjct: 913 GCGNRLESGGCGGCGGGGCGNRLESGGCGGCGGGGCGNRLESGG 931

[Close]

BLAST of Lsi07G013240 vs. NCBI nr
Match: gi|703132428|ref|XP_010105122.1| (hypothetical protein L484_016112 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 75/215 (34.88%), Postives = 113/215 (52.56%), Query Frame = 1


Query: 64  GGCNARIRSKDMVKSGGCSGGIEGEDLVKSNGC-----IAATGCGSKIKSGGCTAPAGCG 123
           GGC +   +K  V S GC   +  E     +GC       ++GCG+K+ + G    +GCG
Sbjct: 704 GGCGSGCGNK--VNSAGCGNKVNTEGSGCGSGCGNKVTTGSSGCGNKVNADGSGCGSGCG 763

Query: 124 SKVKSGGCTAAAGCGSTVKSGGCTGCGSMVKSGGCTVAAGCGSTVKSGGCTVAAGWGSIV 183
           +KV +GG    +GCG+ V  GG +GC +MV + G    +GCG+ V  GG    +G GS V
Sbjct: 764 NKVSAGGSGCGSGCGNKVSDGG-SGCENMVSADGSGCGSGCGNKVSDGGSGCGSGCGSKV 823

Query: 184 KSGGCTVAAGWGSMVKSGGCTAAAGCGSTVKSSGCTAAAGCGSKVKSGGCTAAARCRSTT 243
            +GG    +G G+ V  GG    +GCGS V + G    +GCG+KV +GG    + C +  
Sbjct: 824 TAGG----SGCGTKVSDGG----SGCGSKVSAGGSGCGSGCGNKVSAGGSGCGSGCGTKV 883

Query: 244 KSNGCTAAAGCGSTVMNGGCTTDAGCESTIKSSGA 274
            + G    +GCG+ V  GG    +GC + + + G+
Sbjct: 884 SAGGSGCGSGCGTKVTAGGSGCGSGCGNKVSAGGS 907

[Close]

BLAST of Lsi07G013240 vs. NCBI nr
Match: gi|595842370|ref|XP_007208405.1| (hypothetical protein PRUPE_ppa001356mg [Prunus persica])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1   MKRLLGLVLDHDDMDSDRSVGKKLDIGFTGTTKQWDDTFGTRHWKVGAMYRDLAPRIEGV 60
           +  LLG VL+HDDMDSDR+ GKKLD+GF+GTTKQW++ FGTR+WK GAMYR  AP     
Sbjct: 239 LNELLGKVLEHDDMDSDRTKGKKLDVGFSGTTKQWEEAFGTRYWKAGAMYRGSAP---CP 298

Query: 61  VKSGGCNARIRSKDMVKS 79
           V +    + + SKD+V S
Sbjct: 299 VTTTPYKSSVMSKDVVAS 313

The following BLAST results are available for this feature:

BLAST of Lsi07G013240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRDP1_ARATH	1.1e-14	63.64	Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 S...	[more]
GRDP2_ARATH	1.5e-14	60.71	Glycine-rich domain-containing protein 2 OS=Arabidopsis thaliana GN=GRDP2 PE=2 S...	[more]

BLAST of Lsi07G013240 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RQG9_9ROSA	1.9e-16	34.88	Uncharacterized protein OS=Morus notabilis GN=L484_016112 PE=4 SV=1	[more]
M5W7C6_PRUPE	2.4e-16	57.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001356mg PE=4 SV=1	[more]
B9SMJ6_RICCO	2.7e-15	67.27	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0230330 PE=4 SV=1	[more]
A0A072UF22_MEDTR	4.6e-15	67.27	DNA-binding protein, putative OS=Medicago truncatula GN=MTR_5g030890 PE=4 SV=1	[more]
A0A0A0L5L1_CUCSA	4.6e-15	67.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G033730 PE=4 SV=1	[more]

BLAST of Lsi07G013240 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22660.2	6.3e-16	63.64	Protein of unknown function (duplicated DUF1399)	[more]
AT4G37900.1	8.3e-16	60.71	Protein of unknown function (duplicated DUF1399)	[more]

BLAST of Lsi07G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|970009591\|ref\|XP_015065683.1\|	4.1e-17	39.06	PREDICTED: glycine-rich domain-containing protein 2-like isoform X2 [Solanum pen...	[more]
gi\|970009589\|ref\|XP_015065682.1\|	4.1e-17	39.06	PREDICTED: glycine-rich domain-containing protein 2-like isoform X1 [Solanum pen...	[more]
gi\|970009593\|ref\|XP_015065684.1\|	7.0e-17	42.86	PREDICTED: glycine-rich domain-containing protein 2-like isoform X3 [Solanum pen...	[more]
gi\|703132428\|ref\|XP_010105122.1\|	2.7e-16	34.88	hypothetical protein L484_016112 [Morus notabilis]	[more]
gi\|595842370\|ref\|XP_007208405.1\|	3.5e-16	57.69	hypothetical protein PRUPE_ppa001356mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G013240.1	Lsi07G013240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34365	FAMILY NOT NAMED	coord: 1..55 score: 1.6
None	No IPR available	PANTHER	PTHR34365:SF2	SUBFAMILY NOT NAMED	coord: 1..55 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G013240	BhiUN285G1	Wax gourd	lsiwgoB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G013240	Bottle gourd (USVL1VR-Ls)	lsilsiB019
Lsi07G013240	Cucumber (Gy14) v1	cgylsiB491
Lsi07G013240	Cucumber (Gy14) v1	cgylsiB530
Lsi07G013240	Cucurbita maxima (Rimu)	cmalsiB291
Lsi07G013240	Cucurbita maxima (Rimu)	cmalsiB327
Lsi07G013240	Cucurbita maxima (Rimu)	cmalsiB775
Lsi07G013240	Cucurbita moschata (Rifu)	cmolsiB279
Lsi07G013240	Cucurbita moschata (Rifu)	cmolsiB316
Lsi07G013240	Cucurbita moschata (Rifu)	cmolsiB766
Lsi07G013240	Cucurbita pepo (Zucchini)	cpelsiB156
Lsi07G013240	Cucurbita pepo (Zucchini)	cpelsiB186
Lsi07G013240	Cucurbita pepo (Zucchini)	cpelsiB721
Lsi07G013240	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G013240	Wild cucumber (PI 183967)	cpilsiB390
Lsi07G013240	Cucumber (Chinese Long) v2	culsiB228
Lsi07G013240	Cucumber (Chinese Long) v2	culsiB386
Lsi07G013240	Melon (DHL92) v3.5.1	lsimeB426
Lsi07G013240	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G013240	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G013240	Watermelon (Charleston Gray)	lsiwcgB394
Lsi07G013240	Watermelon (97103) v1	lsiwmB428
Lsi07G013240	Watermelon (97103) v1	lsiwmB454
Lsi07G013240	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G013240	Cucumber (Gy14) v2	cgyblsiB352
Lsi07G013240	Melon (DHL92) v3.6.1	lsimedB446
Lsi07G013240	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G013240	Silver-seed gourd	carlsiB645
Lsi07G013240	Silver-seed gourd	carlsiB786
Lsi07G013240	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G013240	Cucumber (Chinese Long) v3	cuclsiB409
Lsi07G013240	Watermelon (97103) v2	lsiwmbB391
Lsi07G013240	Watermelon (97103) v2	lsiwmbB395
Lsi07G013240	Wax gourd	lsiwgoB541