Lsi07G011940 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G011940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGlycine-rich protein-1
Locationchr07 : 17441679 .. 17442398 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCCTTAGAGGGTTATTGTGCCTTTCATTTCTTCTCTTGGTTGGGTTAGGTTTAGCTTCGGCTACCGGAACTCTTCTTGATTATGATTCCCATACACCTCACTATGGTTATGATCGTCCTACTCCAAGAGTAGGGTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGTTCTAGTAGAGGACATGGAATTGGAGACTCCGCTCTTGGAGGTTCGGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATACGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATATGGAAGTGTAAGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAGATCGTTATGGGCCTTCCCTTGGAGGCTCAGGATATGGAAGTGGCAATGGATATGACCAAGGAAGAGATAATGGTGTGGGTTATGGAAGTAGAGGAGGTAGCAATGGCTATGGTGATTCACGTGACAATGGATATGGAGCACGTGACAATGGCCATGGAGATTCACGTGGATATGGAGCACGTGATAATGGCTATGGAGTCGGAGGTCATGGTGGTGGTCATGATAATAATGGAGGTGTTCATGGAGGACAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGAGAATTGA

mRNA sequence

ATGGCTATCCTTAGAGGGTTATTGTGCCTTTCATTTCTTCTCTTGGTTGGGTTAGGTTTAGCTTCGGCTACCGGAACTCTTCTTGATTATGATTCCCATACACCTCACTATGGTTATGATCGTCCTACTCCAAGAGTAGGGTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGTTCTAGTAGAGGACATGGAATTGGAGACTCCGCTCTTGGAGGTTCGGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATACGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATATGGAAGTGTAAGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAGATCGTTATGGGCCTTCCCTTGGAGGCTCAGGATATGGAAGTGGCAATGGATATGACCAAGGAAGAGATAATGGTGTGGGTTATGGAAGTAGAGGAGGTAGCAATGGCTATGGTGATTCACGTGACAATGGATATGGAGCACGTGACAATGGCCATGGAGATTCACGTGGATATGGAGCACGTGATAATGGCTATGGAGTCGGAGGTCATGGTGGTGGTCATGATAATAATGGAGGTGTTCATGGAGGACAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGAGAATTGA

Coding sequence (CDS)

ATGGCTATCCTTAGAGGGTTATTGTGCCTTTCATTTCTTCTCTTGGTTGGGTTAGGTTTAGCTTCGGCTACCGGAACTCTTCTTGATTATGATTCCCATACACCTCACTATGGTTATGATCGTCCTACTCCAAGAGTAGGGTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGTTCTAGTAGAGGACATGGAATTGGAGACTCCGCTCTTGGAGGTTCGGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATACGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATATGGAAGTGTAAGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAGATCGTTATGGGCCTTCCCTTGGAGGCTCAGGATATGGAAGTGGCAATGGATATGACCAAGGAAGAGATAATGGTGTGGGTTATGGAAGTAGAGGAGGTAGCAATGGCTATGGTGATTCACGTGACAATGGATATGGAGCACGTGACAATGGCCATGGAGATTCACGTGGATATGGAGCACGTGATAATGGCTATGGAGTCGGAGGTCATGGTGGTGGTCATGATAATAATGGAGGTGTTCATGGAGGACAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGAGAATTGA

Protein sequence

MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNAYGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGSVRGHGDGYGSNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGGSNGYGDSRDNGYGARDNGHGDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKGSGEEGGYDGGYAVKNSISKEN
Homology
[Close]
BLAST of Lsi07G011940 vs. TrEMBL
Match: A0A0A0L1V3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.0e-69
Identity = 175/240 (72.92%), Postives = 185/240 (77.08%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAILR L CL+FLL V LGLASAT TLLDYD  T  YGYDRP+PRVGYDP H DESYD A
Sbjct: 1   MAILRAL-CLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGSVRGHGDGY 120
           YGGSSSRGHGIGDSALGGSG YEGGG  D GYG R++DRGVGYGN GGGYG V GHGDGY
Sbjct: 61  YGGSSSRGHGIGDSALGGSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGY 120

Query: 121 GSNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGGSNGYGDSRDNGYGARDNG 180
           G+NGGG YGDRYGPSLGGSGYGS              G +G  NGY D    G GARDN 
Sbjct: 121 GNNGGGSYGDRYGPSLGGSGYGS--------------GGKGSGNGY-DDHSRGNGARDNS 180

Query: 181 HGDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKGSGEEGGYDGGYAVKNSISKEN 240
           +GDS G+G RD+GYG GG   G   NGGVHGG+YDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 181 YGDSHGHGGRDSGYGSGGGVTGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

[Close]
BLAST of Lsi07G011940 vs. TrEMBL
Match: A0A0A0L6H2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010060 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 128/244 (52.46%), Postives = 142/244 (58.20%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAI R +LC+ FLL VGLGLASAT TLLDYD     Y YD PTPRVGYDPSHRD+SYDNA
Sbjct: 1   MAISR-VLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDHPTPRVGYDPSHRDQSYDNA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYG-----NGGGYGSVRGH 120
           Y GSSS+G+GIGDS LGGSGRY GG G DSGYGGRNDDRGVGYG        GYG   G 
Sbjct: 61  YSGSSSKGYGIGDSTLGGSGRYGGGKGHDSGYGGRNDDRGVGYGGRNDDRSTGYG---GR 120

Query: 121 GDGYGSNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGG--SNGYG---DSRD 180
            D      GG   DR      G+GYG  N      D   GYG R    S+GYG   D R 
Sbjct: 121 NDDRSDGYGGRNDDR------GAGYGGRND-----DRSDGYGGRNDDRSDGYGGRNDDRS 180

Query: 181 NGYGARDNGHGDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKG-SGEEGGYDGGY 234
           +GYG R++   D  GYG R++    G  G   D + G  G   D S G  G       GY
Sbjct: 181 DGYGGRNDDRSD--GYGGRNDDRSDGYGGRNDDRSDGYGGRNDDRSDGYGGRNDDRSDGY 227

[Close]
BLAST of Lsi07G011940 vs. TrEMBL
Match: A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 1 

Query: 1  MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
          MAI R +LC+ FLL VGLGLASAT TLLDYD     Y YDRPTPRVGYDPSHRD+SYDN 
Sbjct: 1  MAISR-VLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNV 60

Query: 61 YGGSSSRGHGIGDSALGGSGRYEGGGG 88
          YGGSSSRG+G GDSALG     + G G
Sbjct: 61 YGGSSSRGYGAGDSALGAKEVEKKGVG 86

[Close]
BLAST of Lsi07G011940 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 121/264 (45.83%), Postives = 133/264 (50.38%), Query Frame = 1 

Query: 8   LCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDR-----PTPRVGYDPSHRDESY----- 67
           L   FLLLV LGLASA  +LL YD      GYD        P+VGY+   RD  Y     
Sbjct: 7   LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGYYHDRDH 66

Query: 68  -DNAYGGSSSRGHGIG---DSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGG------ 127
            D  YGG +  G+G G    S+LGGSG Y  GGG  SGYGG  +   VGYG+GG      
Sbjct: 67  HDAPYGGGAGGGYGAGAGAGSSLGGSG-YGSGGGGGSGYGGVGNHE-VGYGSGGGGGYGA 126

Query: 128 ---------GYGSVRGHGDGYGSNGGGGYGDRYGPSLG-GSGYGSGNGYDQGRDNGVGYG 187
                    GYGS      G G   GGGYGD  G   G GSG G G+GY    D+GVGYG
Sbjct: 127 GVGSDLGGSGYGS------GGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 186

Query: 188 SRGGSNGYGDSRDNGYGARDN--------GHGDSRGYGARDNGYGVG-GHGGGHDNNGGV 231
           S GG  GYG     G G  D+        G G   GYG    GYG G G GGG    GG 
Sbjct: 187 S-GGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGG-SKGYGGGSGGGGGAGYGGGA 246

[Close]
BLAST of Lsi07G011940 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 121/264 (45.83%), Postives = 133/264 (50.38%), Query Frame = 1 

Query: 8   LCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDR-----PTPRVGYDPSHRDESY----- 67
           L   FLLLV LGLASA  +LL YD      GYD        P+VGY+   RD  Y     
Sbjct: 7   LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGYYHDRDH 66

Query: 68  -DNAYGGSSSRGHGIG---DSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGG------ 127
            D  YGG +  G+G G    S+LGGSG Y  GGG  SGYGG  +   VGYG+GG      
Sbjct: 67  HDAPYGGGAGGGYGAGAGAGSSLGGSG-YGSGGGGGSGYGGVGNHE-VGYGSGGGGGYGA 126

Query: 128 ---------GYGSVRGHGDGYGSNGGGGYGDRYGPSLG-GSGYGSGNGYDQGRDNGVGYG 187
                    GYGS      G G   GGGYGD  G   G GSG G G+GY    D+GVGYG
Sbjct: 127 GVGSDLGGSGYGS------GGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 186

Query: 188 SRGGSNGYGDSRDNGYGARDN--------GHGDSRGYGARDNGYGVG-GHGGGHDNNGGV 231
           S GG  GYG     G G  D+        G G   GYG    GYG G G GGG    GG 
Sbjct: 187 S-GGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGG-SKGYGGGSGGGGGAGYGGGA 246

[Close]
BLAST of Lsi07G011940 vs. NCBI nr
Match: gi|659096568|ref|XP_008449165.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 6.7e-77
Identity = 182/239 (76.15%), Postives = 192/239 (80.33%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAILR L CL+FLL VGLGLASAT TLLDYD  T HYGYDRP+PRVGYDP HRDESYDNA
Sbjct: 1   MAILRAL-CLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGSVRGHGDGYG 120
           YGGSSSRGHGIGDSALGGSG YEGGG RD GYG RND+RGVGYGNGGGYG V GHGDGYG
Sbjct: 61  YGGSSSRGHGIGDSALGGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYG 120

Query: 121 SNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGGSNGYGDSRDNGYGARDNGH 180
           +NGGGGYGDRYGPSLGGSGYGS              G +G  NGY D   +GYG RDNG+
Sbjct: 121 NNGGGGYGDRYGPSLGGSGYGS--------------GGKGSDNGYDDRHSHGYGGRDNGY 180

Query: 181 GDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKGSGEEGGYDGGYAVKNSISKEN 240
           GDS G+  RD+GYG GG   G   NGGVHGG+YDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 181 GDSHGHEGRDSGYGSGGGVSGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

[Close]
BLAST of Lsi07G011940 vs. NCBI nr
Match: gi|778688294|ref|XP_011652712.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.1e-68
Identity = 175/240 (72.92%), Postives = 185/240 (77.08%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAILR L CL+FLL V LGLASAT TLLDYD  T  YGYDRP+PRVGYDP H DESYD A
Sbjct: 1   MAILRAL-CLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGSVRGHGDGY 120
           YGGSSSRGHGIGDSALGGSG YEGGG  D GYG R++DRGVGYGN GGGYG V GHGDGY
Sbjct: 61  YGGSSSRGHGIGDSALGGSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGY 120

Query: 121 GSNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGGSNGYGDSRDNGYGARDNG 180
           G+NGGG YGDRYGPSLGGSGYGS              G +G  NGY D    G GARDN 
Sbjct: 121 GNNGGGSYGDRYGPSLGGSGYGS--------------GGKGSGNGY-DDHSRGNGARDNS 180

Query: 181 HGDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKGSGEEGGYDGGYAVKNSISKEN 240
           +GDS G+G RD+GYG GG   G   NGGVHGG+YDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 181 YGDSHGHGGRDSGYGSGGGVTGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

[Close]
BLAST of Lsi07G011940 vs. NCBI nr
Match: gi|659095616|ref|XP_008448676.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.2e-56
Identity = 174/267 (65.17%), Postives = 189/267 (70.79%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MA+ RGL  LSFLLLVGLGLASA  TLLDYD  T +YGYDRPTPRVGYDPSHRDESYDN 
Sbjct: 1   MAVHRGLY-LSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNV 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGSVRGHGDGYG 120
           YGGSSS+GHGIGDSALGGS   E  GGR   YGGRNDD GVGYGNGGGYGSV GHGDGYG
Sbjct: 61  YGGSSSKGHGIGDSALGGS---EHEGGRHYQYGGRNDDHGVGYGNGGGYGSVGGHGDGYG 120

Query: 121 SNGGGGYGDRYGPSLGGSGYGSGNGYDQG-RDNGVGYGSRGG-SNGYGDSRDNGYGARDN 180
           +NGGGG+GD YG +  G GYGS  G+  G  +NG GYGS GG  +GYG++   GYG+   
Sbjct: 121 NNGGGGHGDGYGNN--GGGYGSVGGHGDGYGNNGGGYGSVGGHGDGYGNN-GGGYGS-VG 180

Query: 181 GHGD------SRGYGAR------DNGYG-VGGHGGGHD-------------NNGGVHGGQ 240
           GHGD        GYG R       +GYG  GG G G+               NGGVH G+
Sbjct: 181 GHGDGYGNNGGGGYGDRYGPSLGGSGYGSSGGKGSGNGYGDSSHGYGSGGYGNGGVHEGE 240

[Close]
BLAST of Lsi07G011940 vs. NCBI nr
Match: gi|659096566|ref|XP_008449164.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 8.3e-43
Identity = 157/316 (49.68%), Postives = 171/316 (54.11%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAI R L C+SFLL V LGLASA  TLLDYD  T  Y YD PTPRVGYDPSHRD+SYDNA
Sbjct: 1   MAISRAL-CISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGSVRGHGDGYG 120
           YGGSS+RG+G+GDSALGGSGRYEGGGG D GYGGRNDDRGVGYG     G    HG GYG
Sbjct: 61  YGGSSNRGYGVGDSALGGSGRYEGGGGHDYGYGGRNDDRGVGYG-----GRNDDHGAGYG 120

Query: 121 SNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGGSNGYG-----DSRDNGYGA 180
           +  GG   DR      G+GYG  N      D G GYG R   +G G     D R  GYG 
Sbjct: 121 AGYGGRNDDR------GAGYGGRND-----DRGAGYGRRNDDHGAGYGGRNDDRGAGYGG 180

Query: 181 RDN----GHGDSRGYGARDNGYGVGGHGGGHDNN--GGV--------------------- 240
           R++    G+G+  GYG      GVGGHG G+ NN  GG                      
Sbjct: 181 RNDDRGVGYGNGGGYG------GVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSG 240

[Close]
BLAST of Lsi07G011940 vs. NCBI nr
Match: gi|700200618|gb|KGN55751.1| (hypothetical protein Csa_3G010060 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28
Identity = 128/244 (52.46%), Postives = 142/244 (58.20%), Query Frame = 1 

Query: 1   MAILRGLLCLSFLLLVGLGLASATGTLLDYDSHTPHYGYDRPTPRVGYDPSHRDESYDNA 60
           MAI R +LC+ FLL VGLGLASAT TLLDYD     Y YD PTPRVGYDPSHRD+SYDNA
Sbjct: 1   MAISR-VLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDHPTPRVGYDPSHRDQSYDNA 60

Query: 61  YGGSSSRGHGIGDSALGGSGRYEGGGGRDSGYGGRNDDRGVGYG-----NGGGYGSVRGH 120
           Y GSSS+G+GIGDS LGGSGRY GG G DSGYGGRNDDRGVGYG        GYG   G 
Sbjct: 61  YSGSSSKGYGIGDSTLGGSGRYGGGKGHDSGYGGRNDDRGVGYGGRNDDRSTGYG---GR 120

Query: 121 GDGYGSNGGGGYGDRYGPSLGGSGYGSGNGYDQGRDNGVGYGSRGG--SNGYG---DSRD 180
            D      GG   DR      G+GYG  N      D   GYG R    S+GYG   D R 
Sbjct: 121 NDDRSDGYGGRNDDR------GAGYGGRND-----DRSDGYGGRNDDRSDGYGGRNDDRS 180

Query: 181 NGYGARDNGHGDSRGYGARDNGYGVGGHGGGHDNNGGVHGGQYDNSKG-SGEEGGYDGGY 234
           +GYG R++   D  GYG R++    G  G   D + G  G   D S G  G       GY
Sbjct: 181 DGYGGRNDDRSD--GYGGRNDDRSDGYGGRNDDRSDGYGGRNDDRSDGYGGRNDDRSDGY 227

The following BLAST results are available for this feature:
BLAST of Lsi07G011940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G011940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1V3_CUCSA8.0e-6972.92Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1[more]
A0A0A0L6H2_CUCSA5.2e-2852.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010060 PE=4 SV=1[more]
A0A0A0L190_CUCSA6.9e-2071.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1[more]
A0A0A0L1U7_CUCSA2.3e-1545.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1[more]
Q9ZWM2_CUCSA3.9e-1545.83Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1[more]
BLAST of Lsi07G011940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G011940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096568|ref|XP_008449165.1|6.7e-7776.15PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo][more]
gi|778688294|ref|XP_011652712.1|1.1e-6872.92PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
gi|659095616|ref|XP_008448676.1|2.2e-5665.17PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ... [more]
gi|659096566|ref|XP_008449164.1|8.3e-4349.68PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
gi|700200618|gb|KGN55751.1|7.5e-2852.46hypothetical protein Csa_3G010060 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G011940.1Lsi07G011940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 5..21
score: 2.9E-5coord: 196..214
score: 2.9E-5coord: 132..147
score: 2.9E-5coord: 160..170
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G011940Cucumber (Chinese Long) v3cuclsiB250
Lsi07G011940Cucumber (Chinese Long) v3cuclsiB251
Lsi07G011940Watermelon (97103) v2lsiwmbB395
Lsi07G011940Watermelon (97103) v2lsiwmbB418
Lsi07G011940Wax gourdlsiwgoB539
Lsi07G011940Wax gourdlsiwgoB566
Lsi07G011940Bottle gourd (USVL1VR-Ls)lsilsiB000
Lsi07G011940Cucumber (Gy14) v1cgylsiB510
Lsi07G011940Cucumber (Gy14) v1cgylsiB530
Lsi07G011940Cucurbita maxima (Rimu)cmalsiB324
Lsi07G011940Cucurbita maxima (Rimu)cmalsiB496
Lsi07G011940Cucurbita maxima (Rimu)cmalsiB591
Lsi07G011940Cucurbita maxima (Rimu)cmalsiB772
Lsi07G011940Cucurbita moschata (Rifu)cmolsiB313
Lsi07G011940Cucurbita moschata (Rifu)cmolsiB481
Lsi07G011940Cucurbita moschata (Rifu)cmolsiB574
Lsi07G011940Cucurbita moschata (Rifu)cmolsiB763
Lsi07G011940Cucurbita pepo (Zucchini)cpelsiB183
Lsi07G011940Cucurbita pepo (Zucchini)cpelsiB218
Lsi07G011940Cucurbita pepo (Zucchini)cpelsiB630
Lsi07G011940Cucurbita pepo (Zucchini)cpelsiB725
Lsi07G011940Wild cucumber (PI 183967)cpilsiB227
Lsi07G011940Wild cucumber (PI 183967)cpilsiB228
Lsi07G011940Cucumber (Chinese Long) v2culsiB228
Lsi07G011940Cucumber (Chinese Long) v2culsiB229
Lsi07G011940Melon (DHL92) v3.5.1lsimeB439
Lsi07G011940Melon (DHL92) v3.5.1lsimeB446
Lsi07G011940Watermelon (Charleston Gray)lsiwcgB385
Lsi07G011940Watermelon (Charleston Gray)lsiwcgB389
Lsi07G011940Watermelon (97103) v1lsiwmB424
Lsi07G011940Watermelon (97103) v1lsiwmB429
Lsi07G011940Cucumber (Gy14) v2cgyblsiB217
Lsi07G011940Cucumber (Gy14) v2cgyblsiB218
Lsi07G011940Melon (DHL92) v3.6.1lsimedB458
Lsi07G011940Melon (DHL92) v3.6.1lsimedB462
Lsi07G011940Silver-seed gourdcarlsiB451
Lsi07G011940Silver-seed gourdcarlsiB721
Lsi07G011940Silver-seed gourdcarlsiB889
Lsi07G011940Silver-seed gourdcarlsiB882