Lsi07G011910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Glycine-rich protein-2
Location	chr07 : 17428996 .. 17429763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCTTTAGAACAACTTTGTCTTTTGGTTTTCTTTTGTTGGTGGGTTTAGGCTTAGCTTCGGCAGCCAGAACTCTTCTCTCCTATGATCCTCCACATCACTCTGGATATGACAATTATGATCATCCTGTAAATAACCCAAAAATAGGATACGAACGTGACCATCATGATGGACCTTATGGTGGCGGTGCTGGTGGAGGATATGGAGGCGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGTGGAGGTGGAGGTAGTGGCTCTGGATATGCCGGTGTAGGAGATCATGGGGTTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGGGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACGTGGAAAAGGTTATGGTAGCGGTGGTGGTGGAGGAAGTGGATATGGAGGTAGAGGAGATCATGGAGTTGGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

mRNA sequence

ATGGCTATCTTTAGAACAACTTTGTCTTTTGGTTTTCTTTTGTTGGTGGGTTTAGGCTTAGCTTCGGCAGCCAGAACTCTTCTCTCCTATGATCCTCCACATCACTCTGGATATGACAATTATGATCATCCTGTAAATAACCCAAAAATAGGATACGAACGTGACCATCATGATGGACCTTATGGTGGCGGTGCTGGTGGAGGATATGGAGGCGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGTGGAGGTGGAGGTAGTGGCTCTGGATATGCCGGTGTAGGAGATCATGGGGTTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGGGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACGTGGAAAAGGTTATGGTAGCGGTGGTGGTGGAGGAAGTGGATATGGAGGTAGAGGAGATCATGGAGTTGGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Coding sequence (CDS)

ATGGCTATCTTTAGAACAACTTTGTCTTTTGGTTTTCTTTTGTTGGTGGGTTTAGGCTTAGCTTCGGCAGCCAGAACTCTTCTCTCCTATGATCCTCCACATCACTCTGGATATGACAATTATGATCATCCTGTAAATAACCCAAAAATAGGATACGAACGTGACCATCATGATGGACCTTATGGTGGCGGTGCTGGTGGAGGATATGGAGGCGGAGCTGGCTCATCTCTTGGAGGCTCTGGATATGGAAGTGGTGGAGGTGGAGGTAGTGGCTCTGGATATGCCGGTGTAGGAGATCATGGGGTTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGTGGATATGGAAGCGGTGGCGGGGGAGGAAGTGGTGGAGGATATGGTGATCTAGGAGGACGTGGAAAAGGTTATGGTAGCGGTGGTGGTGGAGGAAGTGGATATGGAGGTAGAGGAGATCATGGAGTTGGTTATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGGTGGTGCAGGATATGGTCCAGGAGGAGACCACGGTGTAGGTTATGGAAGTGGAGGAGGAGGTGGGTCTGGTAGTGGTTATGGTGGTTCCAAAGGATATGGAGGTGGAAGCGGTGGTGGTGGTGGTGGCGGAGCAGGTTATGGTGGTGGAGCACATGGAAGTGGTGGTGGAGCTGGAAGTGGCTACGGCGGCAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Protein sequence

MAIFRTTLSFGFLLLVGLGLASAARTLLSYDPPHHSGYDNYDHPVNNPKIGYERDHHDGPYGGGAGGGYGGGAGSSLGGSGYGSGGGGGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGYGGGAHGSGGGAGSGYGGSGEEGGYDGGYAP

Homology

[Close]

BLAST of Lsi07G011910 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.2e-68
Identity = 226/268 (84.33%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYD-PPHHSGYDNYDHPVNNPKIGYE------ 60
           MAI +T LSFGFLLLV LGLASAAR+LLSYD PPH SGYDNYDHPV NPK+GYE      
Sbjct: 1   MAISKT-LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDG 60

Query: 61  ----RDHHDGPYGGGAGGGYGGGAG--SSLGGSGYGSGGGGGSGSGYAGVGDHGVGYGSG 120
               RDHHD PYGGGAGGGYG GAG  SSLGGSGYGSGGGGGSG  Y GVG+H VGYGSG
Sbjct: 61  YYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSG--YGGVGNHEVGYGSG 120

Query: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180
           GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY
Sbjct: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180

Query: 181 GSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGYGG 240
           GSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGS  GGGGGAGYGG
Sbjct: 181 GSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGS--GGGGGAGYGG 240

Query: 241 GAHGSGGGAGSGYGGSGEEGGYDGGYAP 256
           GAHGSG G+G G  GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGG-AGSGEEGGYDGGYAP 261

[Close]

BLAST of Lsi07G011910 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-67
Identity = 225/268 (83.96%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYD-PPHHSGYDNYDHPVNNPKIGYE------ 60
           MAI +T LSFGFLLLV LGLASAAR+LLSYD PPH SGYDNYDHPV NPK+GYE      
Sbjct: 1   MAISKT-LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDG 60

Query: 61  ----RDHHDGPYGGGAGGGY--GGGAGSSLGGSGYGSGGGGGSGSGYAGVGDHGVGYGSG 120
               RDHHD PYGGGAGGGY  G GAGSSLGGSGYGSGGGG  GSGY GVG+H VGYGSG
Sbjct: 61  YYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGG--GSGYGGVGNHEVGYGSG 120

Query: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180
           GGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY
Sbjct: 121 GGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180

Query: 181 GSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGYGG 240
           GSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGS  GGGGGAGYGG
Sbjct: 181 GSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGS--GGGGGAGYGG 240

Query: 241 GAHGSGGGAGSGYGGSGEEGGYDGGYAP 256
           GAHGSG G+G G  GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGG-AGSGEEGGYDGGYAP 261

[Close]

BLAST of Lsi07G011910 vs. TrEMBL
Match: A0A0A0L3Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-32
Identity = 168/295 (56.95%), Postives = 177/295 (60.00%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYDPPHHSGYDNY-----------DHPVNNPK 60
           MAIFRT  SFGFLLLV LGLASA R+LL+YDPPHHS YD++           D P     
Sbjct: 10  MAIFRT-FSFGFLLLVSLGLASATRSLLTYDPPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------IGYERDHHDG-------PYGGGAGGGYGGGAGSSLGGSGYGSGG 120
                           +GYE DHHDG        YGG AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKG 180
                       DHGVGY +GG GGYGAGVGSDLGGSGYGSG GG SG G GDLGGRGKG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGGRGKG 189

Query: 181 YGSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYG 240
           YG GG GG+GYGGRGDHG   G                   D  V             YG
Sbjct: 190 YGRGGVGGNGYGGRGDHGRVVGH------------------DDVV-------------YG 249

Query: 241 GSKGYGGGSGGGGGGGAGYGGGA----HGSGGGA--GSGYGGSGEEGGYDGGYAP 256
           GSKGYGGGS  G GGGAGY GGA    +GSGGGA  GSGYGGSGEEGGYDGGYAP
Sbjct: 250 GSKGYGGGS--GVGGGAGYSGGASGSGYGSGGGAGSGSGYGGSGEEGGYDGGYAP 257

[Close]

BLAST of Lsi07G011910 vs. TrEMBL
Match: Q9ZWM3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 92/165 (55.76%), Postives = 99/165 (60.00%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYDPPHHSGYDNY-----------DHPVNNPK 60
           MAIFRT  SFGFLLLV LGLASA R+LL+YDPPHHS YD++           D P     
Sbjct: 10  MAIFRT-FSFGFLLLVSLGLASATRSLLTYDPPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------IGYERDHHDG-------PYGGGAGGGYGGGAGSSLGGSGYGSGG 120
                           +GYE DHHDG        YGG AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSDLGGSGYGSGGGG 132
                       DHGVGY +GG GGYGAGVGSDLGGSGYGSG GG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGG 160

[Close]

BLAST of Lsi07G011910 vs. TrEMBL
Match: W1NU74_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00219320 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 152/270 (56.30%), Postives = 168/270 (62.22%), Query Frame = 1


Query: 8   LSFGFLLLVGLGLASAARTLLS-YDPPHHSGYDNYDHPVNNPKIGYERDHHDGPYGGGAG 67
           LS  FL+L+GLGL SA+R LL  Y     +GY       +   +G     H   YG G G
Sbjct: 7   LSAAFLVLLGLGLCSASRVLLGGYGYEGGAGYGVGGG--SGSGMGSVEGEHGVGYGSGGG 66

Query: 68  GGYGGGAGSSLG-GSGYGSGGGGGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSD-LGGSG 127
           G  G G G+    G+GYGSGGGGGSG+GY   GDHGVGYGSGGG G GAG G+    G G
Sbjct: 67  GASGAGYGAGGDHGAGYGSGGGGGSGAGYGAGGDHGVGYGSGGGSGGGAGYGAGGEHGGG 126

Query: 128 YGSGGGGGSGGGYGDLGGRGKGYGSGGG--GGSGYGGRGDHGVGYGSGGGGGYGSGGGAG 187
           YGSGGGGGSG GYG  G  G GYGSGGG  GG+GYG  G+HG GYGSGGGGG GSG    
Sbjct: 127 YGSGGGGGSGSGYGAGGEHGGGYGSGGGSGGGAGYGAGGEHGGGYGSGGGGGSGSG---- 186

Query: 188 YGPGGDHGVGYGSGGGGGSGSGYGG----SKGYGGGSGGGGGGGAGYGGG---------- 247
           YG GG+HG GYGSGGG G G GYG       GYG G GGGGG G+GYG G          
Sbjct: 187 YGAGGEHGGGYGSGGGSGGGGGYGAGGEHGGGYGSGGGGGGGSGSGYGAGGAAGGGYGGG 246

Query: 248 ---AHGSGGGAGSGYGGSGEEGGYDGGYAP 256
               +GSGGGAGSG GG G  GG  GGY+P
Sbjct: 247 SAAGYGSGGGAGSG-GGYGAGGGGHGGYSP 269

[Close]

BLAST of Lsi07G011910 vs. NCBI nr
Match: gi|778675041|ref|XP_011650342.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 1.0e-67
Identity = 226/268 (84.33%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYD-PPHHSGYDNYDHPVNNPKIGYE------ 60
           MAI +T LSFGFLLLV LGLASAAR+LLSYD PPH SGYDNYDHPV NPK+GYE      
Sbjct: 1   MAISKT-LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDG 60

Query: 61  ----RDHHDGPYGGGAGGGYGGGAG--SSLGGSGYGSGGGGGSGSGYAGVGDHGVGYGSG 120
               RDHHD PYGGGAGGGYG GAG  SSLGGSGYGSGGGGGSG  Y GVG+H VGYGSG
Sbjct: 61  YYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSG--YGGVGNHEVGYGSG 120

Query: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180
           GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY
Sbjct: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180

Query: 181 GSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGYGG 240
           GSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGS  GGGGGAGYGG
Sbjct: 181 GSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGS--GGGGGAGYGG 240

Query: 241 GAHGSGGGAGSGYGGSGEEGGYDGGYAP 256
           GAHGSG G+G G  GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGG-AGSGEEGGYDGGYAP 261

[Close]

BLAST of Lsi07G011910 vs. NCBI nr
Match: gi|3810890|dbj|BAA34064.1| (glycine-rich protein-2 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 2.3e-67
Identity = 225/268 (83.96%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYD-PPHHSGYDNYDHPVNNPKIGYE------ 60
           MAI +T LSFGFLLLV LGLASAAR+LLSYD PPH SGYDNYDHPV NPK+GYE      
Sbjct: 1   MAISKT-LSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDG 60

Query: 61  ----RDHHDGPYGGGAGGGY--GGGAGSSLGGSGYGSGGGGGSGSGYAGVGDHGVGYGSG 120
               RDHHD PYGGGAGGGY  G GAGSSLGGSGYGSGGGG  GSGY GVG+H VGYGSG
Sbjct: 61  YYHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGG--GSGYGGVGNHEVGYGSG 120

Query: 121 GGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180
           GGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY
Sbjct: 121 GGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGY 180

Query: 181 GSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGYGG 240
           GSGGGGGYGSG G G G   DHGVGYGSGGGGG+GSGYGGSKGYGGGS  GGGGGAGYGG
Sbjct: 181 GSGGGGGYGSGVGGGAGV-VDHGVGYGSGGGGGAGSGYGGSKGYGGGS--GGGGGAGYGG 240

Query: 241 GAHGSGGGAGSGYGGSGEEGGYDGGYAP 256
           GAHGSG G+G G  GSGEEGGYDGGYAP
Sbjct: 241 GAHGSGYGSGGG-AGSGEEGGYDGGYAP 261

[Close]

BLAST of Lsi07G011910 vs. NCBI nr
Match: gi|659095612|ref|XP_008448673.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 8.2e-65
Identity = 225/271 (83.03%), Postives = 231/271 (85.24%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYD-PPHHSGYDN-YD-HPVNNPKIGYERDHH 60
           MAI +T LSFGFLLLV LGLASAAR+LL YD PPH SGYDN YD HPV NPK+GYE DHH
Sbjct: 1   MAISKT-LSFGFLLLVSLGLASAARSLLYYDMPPHRSGYDNNYDNHPVVNPKVGYEHDHH 60

Query: 61  DG----------PYGGGAGGGYG--GGAGSSLGGSGYGSGGGGGSGSGYAGVGDHGVGYG 120
           DG          PYGGGAGGGYG  GGAGSSLGGSGYGSGGGGGSG  Y GVG+HGVGYG
Sbjct: 61  DGYYHDRDHHDAPYGGGAGGGYGAGGGAGSSLGGSGYGSGGGGGSG--YGGVGNHGVGYG 120

Query: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGV 180
           SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGG GKGYGSGGGGGSGYGGRGDHGV
Sbjct: 121 SGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGV 180

Query: 181 GYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGGGAGY 240
           GYGSGGGGGYGSG G   G G DHGVGYGSGGGGG+G GYGGSKGYG GS  GGGGGAGY
Sbjct: 181 GYGSGGGGGYGSGVG---GAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGS--GGGGGAGY 240

Query: 241 GGGAHGSGGGAGSGYG-GSGEEGGYDGGYAP 256
           GGGAHGSG G+G G G GSGEEGGYDGGYAP
Sbjct: 241 GGGAHGSGYGSGGGAGAGSGEEGGYDGGYAP 263

[Close]

BLAST of Lsi07G011910 vs. NCBI nr
Match: gi|659095614|ref|XP_008448674.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 5.4e-40
Identity = 174/292 (59.59%), Postives = 185/292 (63.36%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYDPPHHSGYDNYDHPV--------------- 60
           MAI RT LSFGFLLLV LGLASA R+LL+YDPPH SGYD+++  V               
Sbjct: 10  MAISRT-LSFGFLLLVSLGLASATRSLLTYDPPHQSGYDDHNTKVGYGRDRHDEPYGGGA 69

Query: 61  ------------------NNPKIGYERDHHDGPYGGGAGGGYGGGAGSSLGGSGYGSGGG 120
                             ++   GY+RDHHD  YGGGAGGGYG GAGSSLGGSGYG+   
Sbjct: 70  GGGYGAGAGSGYGSVGHDHDHHDGYDRDHHDRSYGGGAGGGYGAGAGSSLGGSGYGN--- 129

Query: 121 GGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGY 180
                    VGDHGVGYGSGG GGYGAGVGSDLGGSGYGSG GGGSGGGYGD+G RGKGY
Sbjct: 130 ---------VGDHGVGYGSGGSGGYGAGVGSDLGGSGYGSGNGGGSGGGYGDVGSRGKGY 189

Query: 181 GSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYGG 240
           G GG GGSGYGGRGD+G G G                   D  V             YGG
Sbjct: 190 GRGGVGGSGYGGRGDYGRGVGH------------------DDVV-------------YGG 249

Query: 241 SKGYGGGSGGGGGGGAGYGGGAHGSGGGA----GSGYGGSGEEGGYDGGYAP 256
           SKGYGGGSG GG  GAGY GGAHGSGGGA    GSGYGGSGEEGGYDGGYAP
Sbjct: 250 SKGYGGGSGVGG--GAGYSGGAHGSGGGAGSGSGSGYGGSGEEGGYDGGYAP 255

[Close]

BLAST of Lsi07G011910 vs. NCBI nr
Match: gi|778688288|ref|XP_011652710.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.1e-32
Identity = 168/295 (56.95%), Postives = 177/295 (60.00%), Query Frame = 1


Query: 1   MAIFRTTLSFGFLLLVGLGLASAARTLLSYDPPHHSGYDNY-----------DHPVNNPK 60
           MAIFRT  SFGFLLLV LGLASA R+LL+YDPPHHS YD++           D P     
Sbjct: 10  MAIFRT-FSFGFLLLVSLGLASATRSLLTYDPPHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  ----------------IGYERDHHDG-------PYGGGAGGGYGGGAGSSLGGSGYGSGG 120
                           +GYE DHHDG        YGG AGGGYG GAGSSLGGSGYG+  
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRSYGGSAGGGYGVGAGSSLGGSGYGNV- 129

Query: 121 GGGSGSGYAGVGDHGVGYGSGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKG 180
                       DHGVGY +GG GGYGAGVGSDLGGSGYGSG GG SG G GDLGGRGKG
Sbjct: 130 ------------DHGVGYSNGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGGRGKG 189

Query: 181 YGSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGGGAGYGPGGDHGVGYGSGGGGGSGSGYG 240
           YG GG GG+GYGGRGDHG   G                   D  V             YG
Sbjct: 190 YGRGGVGGNGYGGRGDHGRVVGH------------------DDVV-------------YG 249

Query: 241 GSKGYGGGSGGGGGGGAGYGGGA----HGSGGGA--GSGYGGSGEEGGYDGGYAP 256
           GSKGYGGGS  G GGGAGY GGA    +GSGGGA  GSGYGGSGEEGGYDGGYAP
Sbjct: 250 GSKGYGGGS--GVGGGAGYSGGASGSGYGSGGGAGSGSGYGGSGEEGGYDGGYAP 257

The following BLAST results are available for this feature:

BLAST of Lsi07G011910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1U7_CUCSA	7.2e-68	84.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1	[more]
Q9ZWM2_CUCSA	1.6e-67	83.96	Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0L3Y0_CUCSA	6.4e-32	56.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1	[more]
Q9ZWM3_CUCSA	7.3e-20	55.76	Glycine-rich protein-1 OS=Cucumis sativus PE=2 SV=1	[more]
W1NU74_AMBTC	1.5e-12	56.30	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00219320 PE=4 SV=...	[more]

BLAST of Lsi07G011910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675041\|ref\|XP_011650342.1\|	1.0e-67	84.33	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|3810890\|dbj\|BAA34064.1\|	2.3e-67	83.96	glycine-rich protein-2 [Cucumis sativus]	[more]
gi\|659095612\|ref\|XP_008448673.1\|	8.2e-65	83.03	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]
gi\|659095614\|ref\|XP_008448674.1\|	5.4e-40	59.59	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo]	[more]
gi\|778688288\|ref\|XP_011652710.1\|	9.1e-32	56.95	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011910.1	Lsi07G011910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 192..210 score: 2.6E-8coord: 150..160 score: 2.6E-8coord: 124..139 score: 2.6E-8coord: 5..21 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011910	Wax gourd	lsiwgoB537
Lsi07G011910	Wax gourd	lsiwgoB566
Lsi07G011910	Bottle gourd (USVL1VR-Ls)	lsilsiB000
Lsi07G011910	Cucumber (Gy14) v1	cgylsiB510
Lsi07G011910	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011910	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011910	Cucurbita maxima (Rimu)	cmalsiB496
Lsi07G011910	Cucurbita maxima (Rimu)	cmalsiB591
Lsi07G011910	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011910	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011910	Cucurbita moschata (Rifu)	cmolsiB481
Lsi07G011910	Cucurbita moschata (Rifu)	cmolsiB574
Lsi07G011910	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011910	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011910	Cucurbita pepo (Zucchini)	cpelsiB218
Lsi07G011910	Cucurbita pepo (Zucchini)	cpelsiB630
Lsi07G011910	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011910	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011910	Wild cucumber (PI 183967)	cpilsiB228
Lsi07G011910	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011910	Cucumber (Chinese Long) v2	culsiB229
Lsi07G011910	Melon (DHL92) v3.5.1	lsimeB439
Lsi07G011910	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011910	Watermelon (Charleston Gray)	lsiwcgB385
Lsi07G011910	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011910	Watermelon (97103) v1	lsiwmB424
Lsi07G011910	Watermelon (97103) v1	lsiwmB429
Lsi07G011910	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011910	Cucumber (Gy14) v2	cgyblsiB218
Lsi07G011910	Melon (DHL92) v3.6.1	lsimedB458
Lsi07G011910	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011910	Silver-seed gourd	carlsiB451
Lsi07G011910	Silver-seed gourd	carlsiB721
Lsi07G011910	Silver-seed gourd	carlsiB889
Lsi07G011910	Silver-seed gourd	carlsiB882
Lsi07G011910	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011910	Cucumber (Chinese Long) v3	cuclsiB251
Lsi07G011910	Watermelon (97103) v2	lsiwmbB395
Lsi07G011910	Watermelon (97103) v2	lsiwmbB418