Lsi07G011690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor, putative
Location	chr07 : 17162472 .. 17162922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCAGATGTATAGAACTGTAAAGACTACTGACAGAGCTGCTGCTGCAGCTTCTTCTGGTAAAGCCATTATACTCAACCATTTGTATTAATATCATTTTTTAATTCACTTTCTTTTCTATTAAATTTAACCCTTTTTTCGTTCGAATGCGTTAAATTTTTCGCTGGACTAAATGTAGGGAATTCAGATGATGTTTACGATCAAAATGGGTCATCTGGAGATGCAACAAATGAAGATATAACATACGAAAACGAGAAGTCGTCCAGAATGAGACTCGATGCTCCGACGGGTGATCCGATGACCCATGGATTTCGACAAACGGTCATTGGAGGAGGTCAAGATCATCATCGTTCTCATAAGGATTTTCATGCCTTGTGGAGTAATTCTTCGAGGTAAAACACTAAATCTCTTTCTCGTGAAATTATTTGATATCGTTAGATATAAGAGAGAA

mRNA sequence

TTTGCAGATGTATAGAACTGTAAAGACTACTGACAGAGCTGCTGCTGCAGCTTCTTCTGGGAATTCAGATGATGTTTACGATCAAAATGGGTCATCTGGAGATGCAACAAATGAAGATATAACATACGAAAACGAGAAGTCGTCCAGAATGAGACTCGATGCTCCGACGGGTGATCCGATGACCCATGGATTTCGACAAACGGTCATTGGAGGAGGTCAAGATCATCATCGTTCTCATAAGGATTTTCATGCCTTGTGGAGTAATTCTTCGAGGTAAAACACTAAATCTCTTTCTCGTGAAATTATTTGATATCGTTAGATATAAGAGAGAA

Coding sequence (CDS)

ATGTATAGAACTGTAAAGACTACTGACAGAGCTGCTGCTGCAGCTTCTTCTGGGAATTCAGATGATGTTTACGATCAAAATGGGTCATCTGGAGATGCAACAAATGAAGATATAACATACGAAAACGAGAAGTCGTCCAGAATGAGACTCGATGCTCCGACGGGTGATCCGATGACCCATGGATTTCGACAAACGGTCATTGGAGGAGGTCAAGATCATCATCGTTCTCATAAGGATTTTCATGCCTTGTGGAGTAATTCTTCGAGGTAA

Protein sequence

MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTHGFRQTVIGGGQDHHRSHKDFHALWSNSSR

Homology

[Close]

BLAST of Lsi07G011690 vs. TrEMBL
Match: A0A0A0L171_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008330 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.2e-35
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGD TNED TYENEKSSRMRLDAP GDP+TH
Sbjct: 230 MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDTTNEDATYENEKSSRMRLDAPIGDPLTH 289

Query: 61  G-FRQTVIGGGQDHHRSHKDFHALWSNSSR 90
           G FRQTV+  G+DHHRSHKD HALWSNSSR
Sbjct: 290 GRFRQTVV-VGEDHHRSHKDLHALWSNSSR 318

[Close]

BLAST of Lsi07G011690 vs. TrEMBL
Match: F6HT56_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01940 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDR  AAASSG S DVY +NGSSGD T+ED+ ++ +   +  L    G P  H
Sbjct: 242 MYRTVKTTDR--AAASSGQS-DVY-ENGSSGD-TSEDVMFDIQNPRKSELSIQQGRPNVH 301

Query: 61  GFRQTVIGGGQDHHRSHKDFHALWSNSSR 90
                            KD+H LWSNSSR
Sbjct: 302 ---------------QEKDYHGLWSNSSR 310

[Close]

BLAST of Lsi07G011690 vs. NCBI nr
Match: gi|659131260|ref|XP_008465593.1| (PREDICTED: probable transcription factor KAN2 isoform X2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGD TNED TYENEKSSRMRLDAP GDP+TH
Sbjct: 17  MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDTTNEDTTYENEKSSRMRLDAPIGDPLTH 76

Query: 61  G-FRQTVIGGGQDHHRSHKDFHALWSNSSR 90
           G FRQTV+  GQDHHRSHKDFHALWSNSSR
Sbjct: 77  GRFRQTVV-VGQDHHRSHKDFHALWSNSSR 105

[Close]

BLAST of Lsi07G011690 vs. NCBI nr
Match: gi|778674973|ref|XP_011650330.1| (PREDICTED: probable transcription factor KAN2 isoform X2 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGD TNED TYENEKSSRMRLDAP GDP+TH
Sbjct: 230 MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDTTNEDATYENEKSSRMRLDAPIGDPLTH 289

Query: 61  G-FRQTVIGGGQDHHRSHKDFHALWSNSSR 90
           G FRQTV+  G+DHHRSHKD HALWSNSSR
Sbjct: 290 GRFRQTVV-VGEDHHRSHKDLHALWSNSSR 318

[Close]

BLAST of Lsi07G011690 vs. NCBI nr
Match: gi|449465906|ref|XP_004150668.1| (PREDICTED: probable transcription factor KAN2 isoform X1 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-34
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGD TNED TYENEKSSRMRLDAP GDP+TH
Sbjct: 230 MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDTTNEDATYENEKSSRMRLDAPIGDPLTH 289

Query: 61  G-FRQTVIGGGQDHHRSHKDFHALWSNSS 89
           G FRQTV+  G+DHHRSHKD HALWSNSS
Sbjct: 290 GRFRQTVV-VGEDHHRSHKDLHALWSNSS 317

[Close]

BLAST of Lsi07G011690 vs. NCBI nr
Match: gi|659131258|ref|XP_008465592.1| (PREDICTED: probable transcription factor KAN2 isoform X1 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 9.9e-34
Identity = 82/96 (85.42%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSG------NSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPT 60
           MYRTVKTTDRAAAAASSG      NSDDVYDQNGSSGD TNED TYENEKSSRMRLDAP 
Sbjct: 17  MYRTVKTTDRAAAAASSGYDTNVGNSDDVYDQNGSSGDTTNEDTTYENEKSSRMRLDAPI 76

Query: 61  GDPMTHG-FRQTVIGGGQDHHRSHKDFHALWSNSSR 90
           GDP+THG FRQTV+  GQDHHRSHKDFHALWSNSSR
Sbjct: 77  GDPLTHGRFRQTVV-VGQDHHRSHKDFHALWSNSSR 111

[Close]

BLAST of Lsi07G011690 vs. NCBI nr
Match: gi|297742050|emb|CBI33837.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1   MYRTVKTTDRAAAAASSGNSDDVYDQNGSSGDATNEDITYENEKSSRMRLDAPTGDPMTH 60
           MYRTVKTTDR  AAASSG S DVY +NGSSGD T+ED+ ++ +   +  L    G P  H
Sbjct: 209 MYRTVKTTDR--AAASSGQS-DVY-ENGSSGD-TSEDVMFDIQNPRKSELSIQQGRPNVH 268

Query: 61  GFRQTVIGGGQDHHRSHKDFHALWSNSSR 90
                            KD+H LWSNSSR
Sbjct: 269 ---------------QEKDYHGLWSNSSR 277

The following BLAST results are available for this feature:

BLAST of Lsi07G011690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L171_CUCSA	8.2e-35	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008330 PE=4 SV=1	[more]
F6HT56_VITVI	2.7e-06	48.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01940 PE=4 SV=...	[more]

BLAST of Lsi07G011690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131260\|ref\|XP_008465593.1\|	1.1e-35	91.11	PREDICTED: probable transcription factor KAN2 isoform X2 [Cucumis melo]	[more]
gi\|778674973\|ref\|XP_011650330.1\|	1.2e-34	88.89	PREDICTED: probable transcription factor KAN2 isoform X2 [Cucumis sativus]	[more]
gi\|449465906\|ref\|XP_004150668.1\|	4.5e-34	88.76	PREDICTED: probable transcription factor KAN2 isoform X1 [Cucumis sativus]	[more]
gi\|659131258\|ref\|XP_008465592.1\|	9.9e-34	85.42	PREDICTED: probable transcription factor KAN2 isoform X1 [Cucumis melo]	[more]
gi\|297742050\|emb\|CBI33837.3\|	3.9e-06	48.31	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011690.1	Lsi07G011690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G011690	Csa3G008330	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011690	CSPI03G01370	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011690	Cucsa.322050	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011690	CmaCh06G006310	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011690	Cla008833	Watermelon (97103) v1	lsiwmB429
Lsi07G011690	ClCG10G001320	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011690	Cla97C10G185950	Watermelon (97103) v2	lsiwmbB395
Lsi07G011690	Bhi11G000001	Wax gourd	lsiwgoB537
Lsi07G011690	Cp4.1LG14g09760	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011690	CsGy3G001270	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011690	Carg23398	Silver-seed gourd	carlsiB882
Lsi07G011690	Carg23592	Silver-seed gourd	carlsiB958
Lsi07G011690	CsaV3_3G001390	Cucumber (Chinese Long) v3	cuclsiB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011690	Silver-seed gourd	carlsiB721
Lsi07G011690	Cucumber (Chinese Long) v3	cuclsiB251
Lsi07G011690	Watermelon (97103) v2	lsiwmbB418
Lsi07G011690	Wax gourd	lsiwgoB566
Lsi07G011690	Bottle gourd (USVL1VR-Ls)	lsilsiB000
Lsi07G011690	Cucumber (Gy14) v1	cgylsiB510
Lsi07G011690	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011690	Cucurbita maxima (Rimu)	cmalsiB496
Lsi07G011690	Cucurbita maxima (Rimu)	cmalsiB591
Lsi07G011690	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011690	Cucurbita moschata (Rifu)	cmolsiB481
Lsi07G011690	Cucurbita moschata (Rifu)	cmolsiB574
Lsi07G011690	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011690	Cucurbita pepo (Zucchini)	cpelsiB218
Lsi07G011690	Cucurbita pepo (Zucchini)	cpelsiB630
Lsi07G011690	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011690	Wild cucumber (PI 183967)	cpilsiB228
Lsi07G011690	Cucumber (Chinese Long) v2	culsiB229
Lsi07G011690	Melon (DHL92) v3.5.1	lsimeB439
Lsi07G011690	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011690	Watermelon (Charleston Gray)	lsiwcgB385
Lsi07G011690	Watermelon (97103) v1	lsiwmB424
Lsi07G011690	Cucumber (Gy14) v2	cgyblsiB218
Lsi07G011690	Melon (DHL92) v3.6.1	lsimedB458
Lsi07G011690	Melon (DHL92) v3.6.1	lsimedB462