Lsi07G011330 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr07 : 16769464 .. 16769760 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

mRNA sequence

ATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

Coding sequence (CDS)

ATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

Protein sequence

MASRLKKTLKKLSAFVRRQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE

Homology

[Close]

BLAST of Lsi07G011330 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-19
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRIVENCSER 60
           MASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI E+   R
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRIAESSFVR 67

Query: 61  KLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE 99
           KLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEYE+
Sbjct: 68  KLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQ 122

[Close]

BLAST of Lsi07G011330 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MASRLKKTLKKLSAFVR-----RQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYES- 60
           MA RL++TL KL AF+R     R+RS     NVL+D        + R LE  S+S YES 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQ------TARNLERDSSSRYESC 60

Query: 61  --YEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGV--NGFETEYEE 99
             +ED+VD RAEIFI+NFRR LR E Q+SLQ R YGV  N FET+YEE
Sbjct: 61  EEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 102

[Close]

BLAST of Lsi07G011330 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRIVENCSER 60
           MASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI E+   R
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRIAESSFVR 60

Query: 61  KLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE 99
           KLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEYE+
Sbjct: 61  KLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQ 115

[Close]

BLAST of Lsi07G011330 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRIVENCSER 60
           MASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI E+   R
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRIAESSFVR 67

Query: 61  KLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE 99
           KLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEYE+
Sbjct: 68  KLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQ 122

[Close]

BLAST of Lsi07G011330 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MASRLKKTLKKLSAFVR-----RQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYES- 60
           MA RL++TL KL AF+R     R+RS     NVL+D        + R LE  S+S YES 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQ------TARNLERDSSSRYESC 60

Query: 61  --YEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGV--NGFETEYEE 99
             +ED+VD RAEIFI+NFRR LR E Q+SLQ R YGV  N FET+YEE
Sbjct: 61  EEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 102

The following BLAST results are available for this feature:

BLAST of Lsi07G011330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	9.0e-19	56.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	2.5e-13	53.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]

BLAST of Lsi07G011330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688278\|ref\|XP_011652707.1\|	1.3e-18	56.03	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	1.3e-18	56.03	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	3.7e-13	53.70	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011330.1	Lsi07G011330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 57..86 score: 3.
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 1..96 score: 7.6
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 1..96 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011330	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011330	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011330	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011330	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011330	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011330	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011330	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011330	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011330	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011330	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011330	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011330	Watermelon (97103) v1	lsiwmB429
Lsi07G011330	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011330	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011330	Silver-seed gourd	carlsiB621
Lsi07G011330	Silver-seed gourd	carlsiB958
Lsi07G011330	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011330	Watermelon (97103) v2	lsiwmbB395
Lsi07G011330	Wax gourd	lsiwgoB575