Lsi07G011270 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF761 domain protein
Location	chr07 : 16727171 .. 16727826 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTATTATGATATAATCTAATATTTAAATCACAGGAAACTTTAGCCGGAAAGCATACAAGCATTTGTGTAAAAGAAGAAATAAAAACGAGAGAATAATATGGTGGAATTAATTTAATGCATATTTAGTGTCTAAGAAGTAAGAATTCTCCAACCCGACCTTTTATATCATTTGGATTCATGCCACGTGTCATGATTTAATTAGATAAAAACAAACTCCCAGAGGGCAGATCTGTAATTACACAATCGAATGAGGCTTGCATATAAATAGCCTCTTCATTTTCGCCGTTTTTCGGTCTTCCTACTTTTCGCTTTCTTTTTCATTTGACAGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACGTTGAAGAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

mRNA sequence

ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Coding sequence (CDS)

ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Protein sequence

MDVQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG

Homology

[Close]

BLAST of Lsi07G011270 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Lsi07G011270 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 50  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 102
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 70  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 50  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 102
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

The following BLAST results are available for this feature:

BLAST of Lsi07G011270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	1.0e-12	79.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	4.4e-11	74.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]

BLAST of Lsi07G011270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688278\|ref\|XP_011652707.1\|	1.5e-12	79.59	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	1.5e-12	79.59	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	6.3e-11	74.07	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011270.1	Lsi07G011270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 50..80 score: 5.3
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 51..90 score: 1.5
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 51..90 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G011270	Cla97C10G185600	Watermelon (97103) v2	lsiwmbB395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011270	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011270	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011270	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011270	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011270	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011270	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011270	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011270	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011270	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011270	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011270	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011270	Watermelon (97103) v1	lsiwmB429
Lsi07G011270	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011270	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011270	Silver-seed gourd	carlsiB389
Lsi07G011270	Silver-seed gourd	carlsiB621
Lsi07G011270	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011270	Wax gourd	lsiwgoB575