Lsi07G011010 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Casein kinase I
Location	chr07 : 16413151 .. 16415896 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTTCGCTCTTTAGGGGCTAATTTTTCTGGTTCACACATGATGTGGTAATTCGGTTAAACGAGGCATTTTTATCTTCTTTTCTTGTTTTGTTACCTTTTATATCTCGATTTCATGTTGTGCGATGTCTGCTTCGATTGTAATTATCCTTGTTAACGTCTAATAACCCATTGACATCAAATAGCCAAGTTCGATTTGATCACATATATACGATTATGGCATGTTCTTTGATTTAGCAATACCATACTAGGCTTTCATTTTGTTTACTTCTTCATCATCAAGAAGGGATTTTCTTTAGAGACTTATTTAGTTTGTGATCCTCAAGTGTTATGAAGCATGTTTGGGTCCACTCTGCTCTGTCTTGCTTAGTTCTTTGTTTTATCAATTCTGTTGTTGTAAGTGTTTTAGAAGTTGTTGTATGTGGTTGGCAGTTCTACGTATTCAATCTTATTTGTCATTTATACTTCTAAGTTTCATAGATTTGACTACCTGCCCAAAAAATTTGCCTAAAGAACAAGGGGTAGTACATAGAGGGTTTTGACAAAACGAAGCAGAAGGCACTTAAACTGATTGTAAATAATTGAATTAAAAGAAGGCTAATGCCTTGATGTTTTTAGTCTAGAAGGTGCAAATAATTGAATTAAAAGAAGGATAATGCCTTGATGCTTTTAGTCTAGAAGGTGCAAATAATTGAATGCTTGTTAGTGTCAAGTCACTGCCTTCCTTTTTGTGAATGTTAGGTGTAGGTGAGGGATGCCTTCTTCTTATCNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTATTGGTGTGTAAGAGTCGTCCAAACGCTTATTTATAATGATTTTATGTATATTCCATCAGTTTATAAGCAAGTCTTAGAAAACATATTTAAAAATACTATGAAGTAACTTCTTTTCATTTGTTTGAATAGCTAGATTTATGTAAGTGCATTAGTAGTACTTTGGTTTAGGGTTAGAAACTTCTCTACACCTATCCATGAAAGGGAACTGCTTAAAACATTATTCTTTTCCTCCTTGCCCTTGTATGAGGTGTAAGGTTTCTTTCATGGTATATAGTTATCATTTTGGGATTGAATGATGCAGTTCCTTATCTTTTATCATTTTTCATTCTCAAGGAGTTTTCTTTTGTGGGTTTTTGGATGAAGATATTGAATACTCTTGGAAGTTCAGGAAGTAGTTTGGAAAGTCTAGTATTCTCCCATTCCTTTGAAGTTTGAACAAACCCTTTAGGAAGGAATATAGTATTGTGTTTGTAATCACATCTGTACAGTTTATAGCTTAAATGCTCTTTTAGTCTTCCATTCTTCTGTTTTTATTGATATTGATATGTTATGTATTATGCTTATTCATGTGTTGACCAATATAGTTAAGTTCAACTTTATTCCCATATATTTTCTCCAAAAAAAAAAAAAAAAAGGAAAAGGAAAAGAAAAACTTTATTCCCATATAGTTAAAAAAAAAAACTTTATTCCCGTGTAGTTCAATATAGTTTATCACATTCGAAGGGATGTTAAAAACTTGCTCTCCTTACCATACCAATTGTTTTTGCTTTGGTTGTGATATTTTAAGCTTTGTTTCTGCTTCTGGCTGATGAAATTTCTCTCATTGCCATTGTTTATCTTCTTTAGCCTCTGCTTCTTTTTCTCATTGCTAATTGTATTGAGTTCTGTAAATTCATAACATGAAAAGCTTGCTGCTATTGAGTGAAAACTTTTGAGCTTTTTAAATCTTTTGTTGTGCTTCCATTTATTCACCCTCTGCACTGAAATTAGACGAAGTTGGAGTCTTTGAATTTGTGTCTATTTGGTGATTGAACTTTTAAAAGTGTTTAATATAGTAGGTCTTTAAACTTTCAATTTGATGTCAAGTAAGTCTATGAAATGCCTATTTGGTTTAGTTAATTTTGTATCTATTAAGTTGTCTAATGGAACTCTTAATTTTTAGTGACACAAAGTTGAAAGTTTGTTTTATTATAAACAAATCATCCGAGAGAGTGGTGTTATGATTTTTTTTTTGTTTTCAAGGCAAAATACACTTTTGGTCATGAGGTTTGAAGTAGACATCGATTTGGTCTATGAGATTTTATAATTGGCACTTTTAGTCCTTGAAATTTGAATAATTAAATGATTCTTAGACCCATTTGACTGTTAGTTAATTTAACGGATTGTTGATTGGGTTGTTAAATGTTAGTGGACTTGCGTTTTTGTCGCACATATAGAAAATCTCAACAGGCATTTGATGAATTTGACAAGACTAGGTCTGCAGCGGTTTGTGACGTCTAGCGGCGACAACTTCCGGCAGTGCCTAGTCTCACTTCAACAATTAAATTTTTCTCTTCCCTCATATTCTTCATCAAGACTCATCTTTTGTTTAAAATTTTCTTCAAAAGCTTTTATTTTGATTTTTATTTAGGTCTAGGGAGCCAAGTGAAATCAGATCAAGTCGCCCGGTATAGTTGTCTATCTGCAGGCCAAAGGGTTCAGCCTGGTTTTGAGTCCAAAACGAAAATTTTTACCCTTTCTTCCACCACAGAAGTCAGTCGTGATGATACTCACCGGAGCTTTGAGCTATTGTCTGTTGGAACTGGCAAGAGACAATGA

mRNA sequence

ATGGTTATATTGAATACTCTTGGAAGTTCAGGAAGTCTAGGGAGCCAAGTGAAATCAGATCAAGTCGCCCGGTATAGTTGTCTATCTGCAGGCCAAAGGGTTCAGCCTGGTTTTGAGTCCAAAACGAAAATTTTTACCCTTTCTTCCACCACAGAAGTCAGTCGTGATGATACTCACCGGAGCTTTGAGCTATTGTCTGTTGGAACTGGCAAGAGACAATGA

Coding sequence (CDS)

ATGGTTATATTGAATACTCTTGGAAGTTCAGGAAGTCTAGGGAGCCAAGTGAAATCAGATCAAGTCGCCCGGTATAGTTGTCTATCTGCAGGCCAAAGGGTTCAGCCTGGTTTTGAGTCCAAAACGAAAATTTTTACCCTTTCTTCCACCACAGAAGTCAGTCGTGATGATACTCACCGGAGCTTTGAGCTATTGTCTGTTGGAACTGGCAAGAGACAATGA

Protein sequence

MVILNTLGSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSVGTGKRQ

Homology

[Close]

BLAST of Lsi07G011010 vs. TrEMBL
Match: A0A0A0L521_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134960 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-11
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 2   VILNTLGSSGSLGSQVKSDQ-VARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHR 61
           V+ ++  SS    S+++S + V+  S LSAGQRVQPGFESKT  FT SSTT+  RDD  R
Sbjct: 389 VLSSSRPSSSGEPSEIRSSRLVSASSRLSAGQRVQPGFESKTTTFTRSSTTKGGRDDALR 448

Query: 62  SFELLSVGTGKRQ 74
           SFELLS+GTGKR+
Sbjct: 449 SFELLSIGTGKRK 461

[Close]

BLAST of Lsi07G011010 vs. TrEMBL
Match: A0A0D2S9C2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 8   GSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 67
           GSSG       S   +    +S  QRVQPGFESK+  FT ++ T   RDDT RSF+LL++
Sbjct: 377 GSSGEPSENRSSRLFSSSGRMSTTQRVQPGFESKSSSFTRTAVTRAGRDDTLRSFDLLTI 436

Query: 68  GTGKRQ 74
           G+GKR+
Sbjct: 437 GSGKRK 442

[Close]

BLAST of Lsi07G011010 vs. TrEMBL
Match: A0A0D2T444_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 8   GSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 67
           GSSG       S   +    +S  QRVQPGFESK+  FT ++ T   RDDT RSF+LL++
Sbjct: 379 GSSGEPSENRSSRLFSSSGRMSTTQRVQPGFESKSSSFTRTAVTRAGRDDTLRSFDLLTI 438

Query: 68  GTGKRQ 74
           G+GKR+
Sbjct: 439 GSGKRK 444

[Close]

BLAST of Lsi07G011010 vs. TrEMBL
Match: A0A0D2T439_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 8   GSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 67
           GSSG       S   +    +S  QRVQPGFESK+  FT ++ T   RDDT RSF+LL++
Sbjct: 364 GSSGEPSENRSSRLFSSSGRMSTTQRVQPGFESKSSSFTRTAVTRAGRDDTLRSFDLLTI 423

Query: 68  GTGKRQ 74
           G+GKR+
Sbjct: 424 GSGKRK 429

[Close]

BLAST of Lsi07G011010 vs. TrEMBL
Match: A0A0D2QG96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 8   GSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 67
           GSSG       S   +    +S  QRVQPGFESK+  FT ++ T   RDDT RSF+LL++
Sbjct: 401 GSSGEPSENRSSRLFSSSGRMSTTQRVQPGFESKSSSFTRTAVTRAGRDDTLRSFDLLTI 460

Query: 68  GTGKRQ 74
           G+GKR+
Sbjct: 461 GSGKRK 466

[Close]

BLAST of Lsi07G011010 vs. NCBI nr
Match: gi|659076105|ref|XP_008438504.1| (PREDICTED: casein kinase I-like isoform X1 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 2   VILNTLGSSGSLGSQVKSDQ-VARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHR 61
           V+ ++  SS    S+++S + V+  S LSAGQRVQPGFESKT  FT SSTT+  RDDT R
Sbjct: 389 VLSSSRPSSSGEPSEIRSSRLVSASSRLSAGQRVQPGFESKTTTFTRSSTTKGGRDDTLR 448

Query: 62  SFELLSVGTGKRQ 74
           SFELLS+GTGKR+
Sbjct: 449 SFELLSIGTGKRK 461

[Close]

BLAST of Lsi07G011010 vs. NCBI nr
Match: gi|449432534|ref|XP_004134054.1| (PREDICTED: casein kinase I isoform X1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 2   VILNTLGSSGSLGSQVKSDQ-VARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHR 61
           V+ ++  SS    S+++S + V+  S LSAGQRVQPGFESKT  FT SSTT+  RDD  R
Sbjct: 389 VLSSSRPSSSGEPSEIRSSRLVSASSRLSAGQRVQPGFESKTTTFTRSSTTKGGRDDALR 448

Query: 62  SFELLSVGTGKRQ 74
           SFELLS+GTGKR+
Sbjct: 449 SFELLSIGTGKRK 461

[Close]

BLAST of Lsi07G011010 vs. NCBI nr
Match: gi|1009140848|ref|XP_015887873.1| (PREDICTED: casein kinase I-like [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 9   SSGSLGSQVKSDQVARYSC-LSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 68
           SSG      +S ++   S  LS  QRVQPGFESKT  F+ ++ T  SRDD  RSFELLS+
Sbjct: 399 SSGEPSENNRSSRLVSSSGRLSTTQRVQPGFESKTTSFSRAAATRGSRDDALRSFELLSI 458

Query: 69  GTGKRQ 74
           GTGKR+
Sbjct: 459 GTGKRK 464

[Close]

BLAST of Lsi07G011010 vs. NCBI nr
Match: gi|1012240167|ref|XP_015940677.1| (PREDICTED: casein kinase I-like [Arachis duranensis])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1   MVILNTLGSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHR 60
           +V+ +   SSG       S  +A  S LS  QR+QPG ESKT  FT +S T   RDDT R
Sbjct: 385 VVLSSRPSSSGEPSENRSSRLLASSSRLSTTQRIQPGLESKTS-FTRASGTRGGRDDTLR 444

Query: 61  SFELLSVGTGKRQ 74
           SFELLS+GTGKR+
Sbjct: 445 SFELLSIGTGKRK 456

[Close]

BLAST of Lsi07G011010 vs. NCBI nr
Match: gi|720020314|ref|XP_010262366.1| (PREDICTED: casein kinase I-like [Nelumbo nucifera])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 8   GSSGSLGSQVKSDQVARYSCLSAGQRVQPGFESKTKIFTLSSTTEVSRDDTHRSFELLSV 67
           GSSG       S  V+    LS  QRVQPGFESK+   + ++ T  +RDDT RSFELLS+
Sbjct: 398 GSSGEPSENRPSRMVSGSGRLSTTQRVQPGFESKSSSLSRAAATRSARDDTFRSFELLSI 457

Query: 68  GTGKRQ 74
           GT KR+
Sbjct: 458 GTEKRK 463

The following BLAST results are available for this feature:

BLAST of Lsi07G011010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L521_CUCSA	8.8e-11	58.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134960 PE=3 SV=1	[more]
A0A0D2S9C2_GOSRA	1.3e-06	48.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1	[more]
A0A0D2T444_GOSRA	1.3e-06	48.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1	[more]
A0A0D2T439_GOSRA	1.3e-06	48.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=4 SV=1	[more]
A0A0D2QG96_GOSRA	1.3e-06	48.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G253000 PE=3 SV=1	[more]

BLAST of Lsi07G011010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076105\|ref\|XP_008438504.1\|	3.3e-11	60.27	PREDICTED: casein kinase I-like isoform X1 [Cucumis melo]	[more]
gi\|449432534\|ref\|XP_004134054.1\|	1.3e-10	58.90	PREDICTED: casein kinase I isoform X1 [Cucumis sativus]	[more]
gi\|1009140848\|ref\|XP_015887873.1\|	1.4e-06	54.55	PREDICTED: casein kinase I-like [Ziziphus jujuba]	[more]
gi\|1012240167\|ref\|XP_015940677.1\|	1.4e-06	52.05	PREDICTED: casein kinase I-like [Arachis duranensis]	[more]
gi\|720020314\|ref\|XP_010262366.1\|	1.9e-06	51.52	PREDICTED: casein kinase I-like [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011010.1	Lsi07G011010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011010	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011010	Cucurbita moschata (Rifu)	cmolsiB439
Lsi07G011010	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011010	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011010	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011010	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011010	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011010	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011010	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011010	Watermelon (97103) v1	lsiwmB429
Lsi07G011010	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011010	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011010	Silver-seed gourd	carlsiB389
Lsi07G011010	Silver-seed gourd	carlsiB621
Lsi07G011010	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011010	Watermelon (97103) v2	lsiwmbB395
Lsi07G011010	Wax gourd	lsiwgoB575
Lsi07G011010	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011010	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011010	Cucurbita maxima (Rimu)	cmalsiB452
Lsi07G011010	Cucurbita maxima (Rimu)	cmalsiB772