Lsi07G009050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G009050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	WRKY transcription factor 23-1
Location	chr07 : 10414641 .. 10419447 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGTGTTGCACTTGAATATCTCTAGATGGCACAAAGTGGAGTGGTGGAAATTATCGGTATTTGTTATTTTTTTTAAATACAACAAAAGGGTATGAGTATTTGAAAGCTTCCGACTTTAAAAGAGGTAAAAAAAATGTCAATATTTGTTAGACTAAGCTCACTTTGAACAATATTTATTAATATATTAGCATGATATTTGTATAAGGAACATTAATTAAAGTATTTTATCAAATTAGACAAAAATGGTCTATTTGTGATATTCCTTTATCAACAATACGAAAATAATATATAAGTGTGATATATAGGAAGAAAATAATTGTCATATATTTACAAATTATTCTTATTGGGTAACAAATTTCCAACTAAATTTGCCAAATTTGCTCCACCAAAAAAAAAAAAAAAAAAAATTTTTGGATCACTAAAGCCTTGTTTGATAACCGATTTTTAGTTTTTGGTTTTTAAAAACTAAGCTTATAAACACCTCTTTCATCTTTAAATTTCTTGCTTCATTATCTATTTTTTATCAATGTTTTTAAAAATCAAGTCAAGTTTTTCTATTAAAAAGAAAGGATAGTTTTTGTTTTTGGAATTTGACTAAGAATTCAACTCTCGTACTTAAGAAATATGTAAAATATTGTAAAAATTGAGAGAAAATAGACTTAATTTTCAAAAACTAAAAACCAAAAACCAAATAATTACCAAACGGGTTTAAATTTTTCAAATACCCATTTTAGCTCAACTTTAGAACAAAAACAAGCTATTATTTTTCCATTATTGTATTCCACCCACCTGATACTTGTCTCAACAACCAACTTATGTGCTTATAGCACATTTAATTACTGCATATTTCAAAAGCAAAATAAACATGAGAACTAAAATGATTTTTTTTTTTTTTAATATCAACAATAAGACAAATTATTGTTATTAGATAGAAATTTAAAGTATTTTTCTTTGATACAATACATCTAAAGCGAAAAACTATCAACCACATTGCGGCAATCTTATCAAATAATTTCTCTAATGATAAATAAAAAAACATGTTTAAGAGTTCATTATAAACCTAAATTTACTAATAAACCTAAACGTTTTAAACTAAAATAAAAATGTTAGAAAGTTCAAAGACAAATGACATAATTTTCAAAATTCTGAAACAAAAATAAGACTTAAACTTCAAAATGTTTTCAAATTTCAAAACAAAAATATAACTAAATTTTTTAAAACTACGTTACTTAGTTAAACTTTCAGTTAGGAATTTAAAGAAGAAAAATAACACATGACGTCAAAATCAAAGCAAACAATAAAATTGTGCACTAAAAACACAAATTTCAATAAAATTGAAGTGAAGTACTTACACATTATATCCATTGAAAAAAAAAATGATTGGATAAGATGGGCTTTGACCAATTAAGAATGAAGAATAATAATCCAACAAAAAGCTCTTGAAATTACTTGTAAGAATTGAAACCCAAAATTTGAAAAAAGGTTTAATTTTTCAAAACTACCCACAACCCCTTTTCCTCCTCAGGCAGTTTAACAACATCATCAACAACATCCTTAAATTACAAGTCATCACATATATAAAGAAAAAGAAGAGAGAGAAAGAGCAAATTTTTGCATGGCCAAAACAAATAGCTTGAAAGTTAGAAACTAAGTTTAAAACCCCAACAAACACTTACCAACTAATTTTGTTCAACTGCCCTGCCCTAAAACAACAACACCTTTAATATTCTAAGAATATATAAGTTTTGAGTTTGAGTTTGAGTTTTTTGGTGAAACCCTAAAATAATAATGGATGATGAGATAATGATGAATCCACAAGATCATCATATGGGAACTTCTTCATTGATGAATAATTGTGAAATTGATTGGGATGGGCTTTTTTCTGGATCTTGTTTGAGTAATATGGAGATGGAGAAGGGAATTTGTGGATGTAGTAAGGATCAAGTTGTTGCAGCAATGGGAGATTATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGAGATATTGGTGGAGGGAAGAATAATAATATGAATAATAAAGGAAAAGTGGTGATGGGTAAAAGAAGAAGTGCAATAATGGCTCCAAGGATTGCTTTTCAGACAAGAAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCACCCATCCTAGGTATGTTCTTATTTTTTTGTTTTAATTTGCATGTTTATAGAATATCAAGAAATTAAATGGGATATTATATATAGTTTTTCAGAAAAAATGTCAAACTATTTAAAAAAATAGCAAAAAAAAAATAGACATTGATAGACTTCTATCAGCATCATCAGTGATCAACTTCTATCATTTCTATCATTAATAGACCTTGATAGACTTCTATCAGCGGCTATCACAATTATCTAAAAATTTTGTTATTTTGTATAAATAATTTCCCTTATTTTTTTTTTTTTTTTAAAATTTCCTTTTATAAACCTTCATTAATATTTGAGTTGATCATGAAGGGGAAAAAATGGAGAAGATGATTTGTGATTGAGCATTAGGCTCTCAAAAGCTTTTGTGTACCATTTGAGTTTTTTTTTTAAGTTAAATTATTGTGATGTGAGGGATATGATATTATACTATAATTTATATTTTTATAAGTCTACTGAGTTATGTTGGATCGGATTAGTAAATTTAAGTAGTTTTTAATCAATCATAATAAGAGTGTTTAATTTATAGTTCAGATTTAAGGAGATGGGGAGTAAATAAAATGTTAAAAAAAAAGCATGTATGTGTATGTATATATCAACTTATACATATCTTTAAGCATTGAGATAGTCTTGGTTAACAAGATTTGTTGTATTCTTTTTCTTTTTTCTTTTTCTTCTTTTTCTTTTTTTTTTTTCCTCCAATTTATTTTAATGGAGTTAAGATTCAACGTCAAACCTTAAAATTGAGAGTACATCATTTTTTTTCTCTCTTAATTGAGCTAGTTGTAGTCTCTTATTATTGGTTGATAAAAGAAAAACATATAGGAATGATAAAAATTTAATTTTAAAAAAAAATTGATAGTAGATCTCTCCTAATTTGATGTAGAGCAATGATAAACTACACCTAATTCCATACTCTCTATTTTTATATATACAAAAAAAAAATTAAAAATTATTTTTTAGAAAAATACAGAACTGCCACGTGGCATTTTTTTTATTGGTCAATTTTTTATGATGCACAGAGATAGGTACAACTCAAGAAGCACCCAAATATTTTTCTTTTATGTATAGTGATAATTTAAGATGACATTTTAGCGATAAAAATTAAAAATTATTTTTTAGAAAAATACAAAACTGCCACGTGGCATTTTTTTTATTGGTCAATTTTTTATGATGCACAGAGATAGGTACAACTCAAGAAGCACCCAAATATTTTTCTTTTATGTATAGTGATAATTTAAGATGACATTTTAGCGATAAAAATTAAAAATTATTTTTTAGAAAAATACAAAACTGCCACGTGGCATTTTTTTTATTGGTCAATTTTTTATGATGCACAGAGATAGGTACAACTCAAGAAGCACCCAAATATTTTTCTTTTATGTATAGTGATAATTTAAGATGACATTTTAGCACGAGGTCGCAAGTGATAATTTAAGAAAAACTTTTTTCATTAATTAATTTGTCCACTTAACTGAAGCTACTGAAACAAATTAATATTTGAGTCCTTCTGAGAACTAAATTTTTTTTAGAGAAATAAAAGTGTTAACAACATTTTTTTCGCATTCCACGTTAATAGTACAACTTTGAAATGTTTCATTTTTTTCTTGAAATTTGAGATTTGTTCTCAAATAATATCACTGTGAGTTATTTCATTAAAATAAGAAGAATATACCTAACATTATTTACAAGGACATAAATTAATATTCAAGGTTATAGTACCACTTTGAAATATTTCATCTTTTTCCTTAAATCTGAGATTTCTTCTCAAAGAATACCCTTAGTTATTTTATTAAAGCAAGAGGGATATAGTAACACTATTTAGAATATCATTCATATAAATTTATATAGCTAATATGTAAAAATTGATTGCACACATGAATATCTTTTGAGATTAAATTAATGGTAATAAATATTGTTAATCTTCTATATAATTTAAATATTAACACGTACTCGTTCTAATTTTTATACATAAGTTATCATAATTCTATATTTTAATGAAGAAAATATTTCTTGAAACACTTTAAAAAGGCTTAAGTATATATATTAGTACAACACAATTGAAGTATGGAGATTTGAACCACAAACCTCGTAGTTACTAGTACACTCGGATGCTAATTAAGTTATGCTCGCTTTGGCAATAATATATTTTAAACAAAGTTTAAAGTTCTAAAGATATAATTAAACATAGCTCAAAGTTTAGGGATATTTAGTATAATTTAAACTATTTTTTTCCTTTGTTTTGTTTAGGAGCTATTACCGGTGTACACATCACACATGTAACGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAGAATCTAATTTTTCTTTTCCATTTCATCAACTTTTTCTGTGTATGTATTTCTATTAATCTTTCTTCTCCCAATGCCACTGGAAAAGCCTAGTCGTCTTAAGGTTGAGAAAGAAATCACACCATCATTTTCTTCTCTAATTAATGGCTTGAGAAGTCTATTGTAATATAC

mRNA sequence

ATGAATAAGGATCAAGTTGTTGCAGCAATGGGAGATTATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGAGATATTGGTGGAGGGAAGAATAATAATATGAATAATAAAGGAAAAGTGGTGATGGGTAAAAGAAGAAGTGCAATAATGGCTCCAAGGATTGCTTTTCAGACAAGAAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCACCCATCCTAGGAGCTATTACCGGTGTACACATCACACATGTAACGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAGAATCTAATTTTTCTTTTCCATTTCATCAACTTTTTCTGTGTATGTATTTCTATTAATCTTTCTTCTCCCAATGCCACTGGAAAAGCCTAGTCGTCTTAAGGTTGAGAAAGAAATCACACCATCATTTTCTTCTCTAATTAATGGCTTGAGAAGTCTATTGTAATATAC

Coding sequence (CDS)

ATGAATAAGGATCAAGTTGTTGCAGCAATGGGAGATTATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGAGATATTGGTGGAGGGAAGAATAATAATATGAATAATAAAGGAAAAGTGGTGATGGGTAAAAGAAGAAGTGCAATAATGGCTCCAAGGATTGCTTTTCAGACAAGAAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCACCCATCCTAGGAGCTATTACCGGTGTACACATCACACATGTAACGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG

Protein sequence

MNKDQVVAAMGDYYDNVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI

Homology

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BLAST of Lsi07G009050 vs. Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-42
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 32  KNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYY 91
           +N+ +  KGK +  KR   +  PRIAF TRS +DVLDDGYRWRKYGQK+VKH+ HPRSYY
Sbjct: 64  ENDQIGEKGKELKEKRSRKV--PRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYY 123

Query: 92  RCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           RCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETL+PLL+QLQFLS
Sbjct: 124 RCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQFLS 174

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BLAST of Lsi07G009050 vs. Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-42
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 1


Query: 26  GDIGGGKNNNMNNKG---KVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVK 85
           G++GG  +NN NN         GK +  +   RIAF TRS +DVLDDGYRWRKYGQK+VK
Sbjct: 69  GEMGGLVSNNSNNSDHNKNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVK 128

Query: 86  HSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQF 145
           ++ HPRSYYRCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETLSPLL+QLQF
Sbjct: 129 NNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQF 188

Query: 146 LSGI 147
           LS +
Sbjct: 189 LSRV 192

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BLAST of Lsi07G009050 vs. Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-35
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1


Query: 42  VVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVK 101
           +V   R   +  PR +F+T+S  D+LDDGYRWRKYGQK+VK+S +PRSYYRCT H CNVK
Sbjct: 4   LVDSSRDKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVK 63

Query: 102 KQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           KQ+QR SK+ +IV TTYEGIHNHP E+LM+TL+PLL QLQFLS
Sbjct: 64  KQVQRLSKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLS 106

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BLAST of Lsi07G009050 vs. Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-28
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 55  RIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIV 114
           R AFQTRS  D+LDDGYRWRKYGQKAVK++  PRSYYRCT+  CNVKKQ+QR + D  +V
Sbjct: 54  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query: 115 VTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           VTTYEG+H+HP EK  E    +L Q+Q  S
Sbjct: 114 VTTYEGVHSHPIEKSTENFEHILTQMQIYS 143

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BLAST of Lsi07G009050 vs. Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 27  DIGGGKNNNMNN-------------KGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRW 86
           + GGG NN+ ++             K KV   K R  +  PR  FQT+S  DVLDDGY+W
Sbjct: 94  NFGGGTNNDAHSNSWWRSNSGSGDMKNKV---KIRRKLREPRFCFQTKSDVDVLDDGYKW 153

Query: 87  RKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNH-PSE 128
           RKYGQK VK+S HPRSYYRCTH+ C VKK+++R S+D  +V+TTYEG HNH PS+
Sbjct: 154 RKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHIPSD 205

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BLAST of Lsi07G009050 vs. TrEMBL
Match: A0A0A0KZP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050130 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.6e-58
Identity = 121/144 (84.03%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 10  MGDYYDNVVNIGGIKEGDI--GGGKNNNMNN-----KGKVVMGKRRSAIMAPRIAFQTRS 69
           MGD  +NVV IGG+KEGDI  GGG NNN NN     KGK+VMGKR S I +PRIAFQT+S
Sbjct: 59  MGDNNNNVV-IGGVKEGDIIIGGGHNNNNNNNNCKYKGKMVMGKR-STIASPRIAFQTKS 118

Query: 70  AEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH 129
            EDVLDDGYRWRKYGQKAVKHS HPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH
Sbjct: 119 VEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH 178

Query: 130 NHPSEKLMETLSPLLKQLQFLSGI 147
           NHPSEKLMETL+PLLKQLQFLSGI
Sbjct: 179 NHPSEKLMETLTPLLKQLQFLSGI 200

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BLAST of Lsi07G009050 vs. TrEMBL
Match: S5CH38_JATCU (Uncharacterized protein OS=Jatropha curcas GN=WRKY21 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-43
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = 1


Query: 16  NVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRK 75
           +VVNIG   +G+IG   NNN N K K+    ++     PR AFQTRSA+D+LDDGYRWRK
Sbjct: 68  SVVNIGEEGKGNIGNNNNNN-NEKRKICSRVKKHT--RPRFAFQTRSADDILDDGYRWRK 127

Query: 76  YGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSP 135
           YGQKAVK+STHPRSYYRCTHHTCNVKKQ+QR SKD +IVVTTYEGIHNHP EKLMETL+P
Sbjct: 128 YGQKAVKNSTHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTP 187

Query: 136 LLKQLQFLS 145
           +LKQ+QFL+
Sbjct: 188 ILKQMQFLA 193

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BLAST of Lsi07G009050 vs. TrEMBL
Match: M4EFW2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 91/132 (68.94%), Postives = 108/132 (81.82%), Query Frame = 1


Query: 15  DNVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWR 74
           DN  +  G    +IGG  ++N NNKGK   GKR SA+  PRIAF TRS +DVLDDGYRWR
Sbjct: 60  DNFQHAEGGDAVEIGGLSDHNKNNKGK---GKRSSAM--PRIAFHTRSDDDVLDDGYRWR 119

Query: 75  KYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLS 134
           KYGQK+VK++ HPRSYYRCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETLS
Sbjct: 120 KYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPKVVVTTYEGVHNHPCEKLMETLS 179

Query: 135 PLLKQLQFLSGI 147
           PLL+QLQFL+ +
Sbjct: 180 PLLRQLQFLTRV 186

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BLAST of Lsi07G009050 vs. TrEMBL
Match: A0A151RYH1_CAJCA (Putative WRKY transcription factor 24 OS=Cajanus cajan GN=KK1_030707 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.9e-41
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 37  NNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHH 96
           N+K K  +G+ +     PR AFQTRSA+D+LDDGYRWRKYGQKAVK+ST+PRSYYRCTHH
Sbjct: 54  NDKEKRKVGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHH 113

Query: 97  TCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           TCNVKKQ+QR SKD +IVVTTYEGIHNHP EKLMETL+PLLKQ+QFL+
Sbjct: 114 TCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLA 161

[Close]

BLAST of Lsi07G009050 vs. TrEMBL
Match: K3XLH8_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_002751mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 1


Query: 21  GGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKA 80
           GG   G  GGGK+      G    GK++++   PR AFQTRSA D+LDDGYRWRKYGQKA
Sbjct: 114 GGEGAGSSGGGKDKAAKGGGAGRSGKKKAS--RPRFAFQTRSANDILDDGYRWRKYGQKA 173

Query: 81  VKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQL 140
           VK+S HPRSYYRCTHHTCNVKKQ+QR +KD +IVVTTYEG+HNHP EKLME LSP+LKQL
Sbjct: 174 VKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHPCEKLMEALSPILKQL 233

Query: 141 QFLS 145
           QFLS
Sbjct: 234 QFLS 235

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BLAST of Lsi07G009050 vs. TAIR10
Match: AT5G41570.1 (AT5G41570.1 WRKY DNA-binding protein 24)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 32  KNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYY 91
           +N+ +  KGK +  KR   +  PRIAF TRS +DVLDDGYRWRKYGQK+VKH+ HPRSYY
Sbjct: 64  ENDQIGEKGKELKEKRSRKV--PRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYY 123

Query: 92  RCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           RCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETL+PLL+QLQFLS
Sbjct: 124 RCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQFLS 174

[Close]

BLAST of Lsi07G009050 vs. TAIR10
Match: AT1G64000.1 (AT1G64000.1 WRKY DNA-binding protein 56)

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 1


Query: 26  GDIGGGKNNNMNNKG---KVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVK 85
           G++GG  +NN NN         GK +  +   RIAF TRS +DVLDDGYRWRKYGQK+VK
Sbjct: 69  GEMGGLVSNNSNNSDHNKNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVK 128

Query: 86  HSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQF 145
           ++ HPRSYYRCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETLSPLL+QLQF
Sbjct: 129 NNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQF 188

Query: 146 LSGI 147
           LS +
Sbjct: 189 LSRV 192

[Close]

BLAST of Lsi07G009050 vs. TAIR10
Match: AT2G46130.1 (AT2G46130.1 WRKY DNA-binding protein 43)

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-36
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1


Query: 42  VVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVK 101
           +V   R   +  PR +F+T+S  D+LDDGYRWRKYGQK+VK+S +PRSYYRCT H CNVK
Sbjct: 4   LVDSSRDKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVK 63

Query: 102 KQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           KQ+QR SK+ +IV TTYEGIHNHP E+LM+TL+PLL QLQFLS
Sbjct: 64  KQVQRLSKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLS 106

[Close]

BLAST of Lsi07G009050 vs. TAIR10
Match: AT5G13080.1 (AT5G13080.1 WRKY DNA-binding protein 75)

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-29
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 55  RIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIV 114
           R AFQTRS  D+LDDGYRWRKYGQKAVK++  PRSYYRCT+  CNVKKQ+QR + D  +V
Sbjct: 54  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query: 115 VTTYEGIHNHPSEKLMETLSPLLKQLQFLS 145
           VTTYEG+H+HP EK  E    +L Q+Q  S
Sbjct: 114 VTTYEGVHSHPIEKSTENFEHILTQMQIYS 143

[Close]

BLAST of Lsi07G009050 vs. TAIR10
Match: AT2G44745.1 (AT2G44745.1 WRKY family transcription factor)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 27  DIGGGKNNNMNN-------------KGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRW 86
           + GGG NN+ ++             K KV   K R  +  PR  FQT+S  DVLDDGY+W
Sbjct: 94  NFGGGTNNDAHSNSWWRSNSGSGDMKNKV---KIRRKLREPRFCFQTKSDVDVLDDGYKW 153

Query: 87  RKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNH-PSE 128
           RKYGQK VK+S HPRSYYRCTH+ C VKK+++R S+D  +V+TTYEG HNH PS+
Sbjct: 154 RKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHIPSD 205

[Close]

BLAST of Lsi07G009050 vs. NCBI nr
Match: gi|659102201|ref|XP_008452004.1| (PREDICTED: probable WRKY transcription factor 43 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 7.3e-58
Identity = 121/146 (82.88%), Postives = 128/146 (87.67%), Query Frame = 1


Query: 10  MGDY-YDNVVN--IGGIKEGDI--GGGKNNNMNN----KGKVVMGKRRSAIMAPRIAFQT 69
           MGD  YDN  N  IGG+KEGDI   GG N+N NN    KG++VMGKRRSA+ +PRIAFQT
Sbjct: 59  MGDSNYDNNNNVVIGGVKEGDIVISGGNNHNNNNNIKYKGRMVMGKRRSAMASPRIAFQT 118

Query: 70  RSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEG 129
           RS EDVLDDGYRWRKYGQKAVKHS HPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEG
Sbjct: 119 RSVEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEG 178

Query: 130 IHNHPSEKLMETLSPLLKQLQFLSGI 147
           IHNHPSEKLMETL+PLLKQLQFLSGI
Sbjct: 179 IHNHPSEKLMETLTPLLKQLQFLSGI 204

[Close]

BLAST of Lsi07G009050 vs. NCBI nr
Match: gi|778690916|ref|XP_011653192.1| (PREDICTED: probable WRKY transcription factor 24 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 9.5e-58
Identity = 121/144 (84.03%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 10  MGDYYDNVVNIGGIKEGDI--GGGKNNNMNN-----KGKVVMGKRRSAIMAPRIAFQTRS 69
           MGD  +NVV IGG+KEGDI  GGG NNN NN     KGK+VMGKR S I +PRIAFQT+S
Sbjct: 59  MGDNNNNVV-IGGVKEGDIIIGGGHNNNNNNNNCKYKGKMVMGKR-STIASPRIAFQTKS 118

Query: 70  AEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH 129
            EDVLDDGYRWRKYGQKAVKHS HPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH
Sbjct: 119 VEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIH 178

Query: 130 NHPSEKLMETLSPLLKQLQFLSGI 147
           NHPSEKLMETL+PLLKQLQFLSGI
Sbjct: 179 NHPSEKLMETLTPLLKQLQFLSGI 200

[Close]

BLAST of Lsi07G009050 vs. NCBI nr
Match: gi|802694917|ref|XP_012083303.1| (PREDICTED: probable WRKY transcription factor 43 isoform X1 [Jatropha curcas])

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = 1


Query: 16  NVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRK 75
           +VVNIG   +G+IG   NNN N K K+    ++     PR AFQTRSA+D+LDDGYRWRK
Sbjct: 68  SVVNIGEEGKGNIGNNNNNN-NEKRKICSRVKKHT--RPRFAFQTRSADDILDDGYRWRK 127

Query: 76  YGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSP 135
           YGQKAVK+STHPRSYYRCTHHTCNVKKQ+QR SKD +IVVTTYEGIHNHP EKLMETL+P
Sbjct: 128 YGQKAVKNSTHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTP 187

Query: 136 LLKQLQFLS 145
           +LKQ+QFL+
Sbjct: 188 ILKQMQFLA 193

[Close]

BLAST of Lsi07G009050 vs. NCBI nr
Match: gi|685355882|ref|XP_009112904.1| (PREDICTED: probable WRKY transcription factor 56 [Brassica rapa])

HSP 1 Score: 179.9 bits (455), Expect = 3.3e-42
Identity = 91/132 (68.94%), Postives = 108/132 (81.82%), Query Frame = 1


Query: 15  DNVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWR 74
           DN  +  G    +IGG  ++N NNKGK   GKR SA+  PRIAF TRS +DVLDDGYRWR
Sbjct: 60  DNFQHAEGGDAVEIGGLSDHNKNNKGK---GKRSSAM--PRIAFHTRSDDDVLDDGYRWR 119

Query: 75  KYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLS 134
           KYGQK+VK++ HPRSYYRCT+HTCNVKKQ+QR +KDP +VVTTYEG+HNHP EKLMETLS
Sbjct: 120 KYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPKVVVTTYEGVHNHPCEKLMETLS 179

Query: 135 PLLKQLQFLSGI 147
           PLL+QLQFL+ +
Sbjct: 180 PLLRQLQFLTRV 186

[Close]

BLAST of Lsi07G009050 vs. NCBI nr
Match: gi|802694921|ref|XP_012083304.1| (PREDICTED: probable WRKY transcription factor 43 isoform X2 [Jatropha curcas])

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-41
Identity = 91/129 (70.54%), Postives = 106/129 (82.17%), Query Frame = 1


Query: 16  NVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRK 75
           +VVNIG   +G+IG   NNN N K K+    ++     PR AFQTRSA+D+LDDGYRWRK
Sbjct: 68  SVVNIGEEGKGNIGNNNNNN-NEKRKICSRVKKHT--RPRFAFQTRSADDILDDGYRWRK 127

Query: 76  YGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSP 135
           YGQKAVK+STHP SYYRCTHHTCNVKKQ+QR SKD +IVVTTYEGIHNHP EKLMETL+P
Sbjct: 128 YGQKAVKNSTHP-SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTP 187

Query: 136 LLKQLQFLS 145
           +LKQ+QFL+
Sbjct: 188 ILKQMQFLA 192

The following BLAST results are available for this feature:

BLAST of Lsi07G009050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WRK24_ARATH	1.9e-42	71.68	Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=...	[more]
WRK56_ARATH	4.3e-42	66.94	Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=...	[more]
WRK43_ARATH	6.6e-35	66.99	Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=...	[more]
WRK75_ARATH	7.8e-28	64.44	Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=...	[more]
WRK12_ARATH	4.7e-25	53.04	Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=...	[more]

BLAST of Lsi07G009050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZP6_CUCSA	6.6e-58	84.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050130 PE=4 SV=1	[more]
S5CH38_JATCU	1.6e-43	71.32	Uncharacterized protein OS=Jatropha curcas GN=WRKY21 PE=4 SV=1	[more]
M4EFW2_BRARP	2.3e-42	68.94	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A151RYH1_CAJCA	1.9e-41	75.93	Putative WRKY transcription factor 24 OS=Cajanus cajan GN=KK1_030707 PE=4 SV=1	[more]
K3XLH8_SETIT	2.5e-41	70.16	Uncharacterized protein OS=Setaria italica GN=SETIT_002751mg PE=4 SV=1	[more]

BLAST of Lsi07G009050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41570.1	1.1e-43	71.68	WRKY DNA-binding protein 24	[more]
AT1G64000.1	2.4e-43	66.94	WRKY DNA-binding protein 56	[more]
AT2G46130.1	3.7e-36	66.99	WRKY DNA-binding protein 43	[more]
AT5G13080.1	4.4e-29	64.44	WRKY DNA-binding protein 75	[more]
AT2G44745.1	2.7e-26	53.04	WRKY family transcription factor	[more]

BLAST of Lsi07G009050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102201\|ref\|XP_008452004.1\|	7.3e-58	82.88	PREDICTED: probable WRKY transcription factor 43 [Cucumis melo]	[more]
gi\|778690916\|ref\|XP_011653192.1\|	9.5e-58	84.03	PREDICTED: probable WRKY transcription factor 24 [Cucumis sativus]	[more]
gi\|802694917\|ref\|XP_012083303.1\|	2.3e-43	71.32	PREDICTED: probable WRKY transcription factor 43 isoform X1 [Jatropha curcas]	[more]
gi\|685355882\|ref\|XP_009112904.1\|	3.3e-42	68.94	PREDICTED: probable WRKY transcription factor 56 [Brassica rapa]	[more]
gi\|802694921\|ref\|XP_012083304.1\|	1.6e-41	70.54	PREDICTED: probable WRKY transcription factor 43 isoform X2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003657	WRKY_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G009050.1	Lsi07G009050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003657	WRKY domain	GENE3D	G3DSA:2.20.25.80		coord: 54..126 score: 1.9
IPR003657	WRKY domain	PFAM	PF03106	WRKY	coord: 68..125 score: 2.9
IPR003657	WRKY domain	SMART	SM00774	WRKY_cls	coord: 67..126 score: 2.6
IPR003657	WRKY domain	PROFILE	PS50811	WRKY	coord: 62..127 score: 2
IPR003657	WRKY domain	unknown	SSF118290	WRKY DNA-binding domain	coord: 60..126 score: 2.48
None	No IPR available	PANTHER	PTHR31221	FAMILY NOT NAMED	coord: 51..144 score: 5.6
None	No IPR available	PANTHER	PTHR31221:SF7	WRKY TRANSCRIPTION FACTOR 24-RELATED	coord: 51..144 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G009050	Csa4G050130	Cucumber (Chinese Long) v2	culsiB306
Lsi07G009050	CSPI04G05950	Wild cucumber (PI 183967)	cpilsiB306
Lsi07G009050	Cucsa.106970	Cucumber (Gy14) v1	cgylsiB141
Lsi07G009050	CmaCh04G007230	Cucurbita maxima (Rimu)	cmalsiB700
Lsi07G009050	CmoCh04G007670	Cucurbita moschata (Rifu)	cmolsiB694
Lsi07G009050	Cla014665	Watermelon (97103) v1	lsiwmB446
Lsi07G009050	MELO3C016337	Melon (DHL92) v3.5.1	lsimeB457
Lsi07G009050	ClCG07G007850	Watermelon (Charleston Gray)	lsiwcgB415
Lsi07G009050	MELO3C016337.2	Melon (DHL92) v3.6.1	lsimedB475
Lsi07G009050	Cla97C07G135020	Watermelon (97103) v2	lsiwmbB414
Lsi07G009050	Bhi01G001784	Wax gourd	lsiwgoB556
Lsi07G009050	Cp4.1LG01g00130	Cucurbita pepo (Zucchini)	cpelsiB379
Lsi07G009050	CsGy4G005840	Cucumber (Gy14) v2	cgyblsiB280
Lsi07G009050	Carg14120	Silver-seed gourd	carlsiB860
Lsi07G009050	CsaV3_4G006120	Cucumber (Chinese Long) v3	cuclsiB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G009050	Cucurbita maxima (Rimu)	cmalsiB328
Lsi07G009050	Cucurbita moschata (Rifu)	cmolsiB317
Lsi07G009050	Cucurbita pepo (Zucchini)	cpelsiB187
Lsi07G009050	Silver-seed gourd	carlsiB535