Lsi07G006040 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G006040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAnkyrin repeat-containing protein, putative
Locationchr07 : 6470738 .. 6471186 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCCAATGATGAAGAAAGTATAAGAAAGGTGTATGCGGCAACAAAGAAGGGATGTATTGAAAGCTTGAAGAAACTGATGGAAGAAGATCCATATCTCATTCAAAAACTTGTTACCTCCTCTTCCAACAATTCTAATCAGACTCATCCATTATTGCATCTCTCTATTTCACATGGCCATCTTGAAATCACTCGACTTCTTCTTCATCACAACCCTCAACTTGCTGCTGAAGTTGACTCCTTGCAACGAACGCCCCTCCATCTTGCTTCTAAACTTGGAGACATGGACATTGTTCAAGCTTGGTTGGAGATGAACATAAGTGCTTGCTTTATTTACGATAATAATGGGTTGATTCCTCTCCACTATGCAGTAATTTCTGGACAAATGGATATCATGCAAGAGCTAATCAAAGCAAGGCCACGATCTCTTTGGATGAAGCTTCATAA

mRNA sequence

ATGTGTTCCAATGATGAAGAAAGTATAAGAAAGGTGTATGCGGCAACAAAGAAGGGATGTATTGAAAGCTTGAAGAAACTGATGGAAGAAGATCCATATCTCATTCAAAAACTTGTTACCTCCTCTTCCAACAATTCTAATCAGACTCATCCATTATTGCATCTCTCTATTTCACATGGCCATCTTGAAATCACTCGACTTCTTCTTCATCACAACCCTCAACTTGCTGCTGAAGTTGACTCCTTGCAACGAACGCCCCTCCATCTTGCTTCTAAACTTGGAGACATGGACATTGTTCAAGCTTGTAATTTCTGGACAAATGGATATCATGCAAGAGCTAATCAAAGCAAGGCCACGATCTCTTTGGATGAAGCTTCATAA

Coding sequence (CDS)

ATGTGTTCCAATGATGAAGAAAGTATAAGAAAGGTGTATGCGGCAACAAAGAAGGGATGTATTGAAAGCTTGAAGAAACTGATGGAAGAAGATCCATATCTCATTCAAAAACTTGTTACCTCCTCTTCCAACAATTCTAATCAGACTCATCCATTATTGCATCTCTCTATTTCACATGGCCATCTTGAAATCACTCGACTTCTTCTTCATCACAACCCTCAACTTGCTGCTGAAGTTGACTCCTTGCAACGAACGCCCCTCCATCTTGCTTCTAAACTTGGAGACATGGACATTGTTCAAGCTTGTAATTTCTGGACAAATGGATATCATGCAAGAGCTAATCAAAGCAAGGCCACGATCTCTTTGGATGAAGCTTCATAA

Protein sequence

MCSNDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLEITRLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQACNFWTNGYHARANQSKATISLDEAS
Homology
[Close]
BLAST of Lsi07G006040 vs. TrEMBL
Match: A0A0A0LFQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846590 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 1 

Query: 6   EESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLEIT 65
           +E+IRK+Y A +KGCIESLK L+EEDP +IQK+V SSSNN+   HPLLHLSIS+GHLE T
Sbjct: 18  QENIRKLYVAAEKGCIESLKTLIEEDPCIIQKVVISSSNNNENRHPLLHLSISNGHLEFT 77

Query: 66  RLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           RLL+H+ PQLAAEVD LQRTPLHLASKLG+ +IV+A
Sbjct: 78  RLLIHYEPQLAAEVDLLQRTPLHLASKLGETEIVEA 113

[Close]
BLAST of Lsi07G006040 vs. TrEMBL
Match: A0A0A0LMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287040 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 55/100 (55.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 3   SNDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHL 62
           S +E+ IRK+Y A+K GC+++LK  ++E+P LI K++  +S+ + +T PLLH+S+S GHL
Sbjct: 32  SMEEDVIRKLYEASKIGCVQTLKTFIKENPNLIHKVLIYTSSITTET-PLLHISVSQGHL 91

Query: 63  EITRLLLHHNPQLAAEVDSLQRTPLHLA-SKLGDMDIVQA 102
           E TRLLL H PQLA EVD+ QRTPLH+A S  GDM+I++A
Sbjct: 92  EFTRLLLDHIPQLATEVDAFQRTPLHIACSNNGDMEIIRA 130

[Close]
BLAST of Lsi07G006040 vs. TrEMBL
Match: A0A0A0LCQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847090 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-19
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 1 

Query: 6   EESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLEIT 65
           EE I K+Y A+K GC+E+LK L+++ PYLIQK    +S  + +T PLLH+S+SHG+LE T
Sbjct: 30  EEDITKLYEASKIGCVETLKTLIQQHPYLIQK----ASIYTIET-PLLHVSVSHGYLEFT 89

Query: 66  RLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           ++LL+HNPQLAAEVD  QRTPLH+A   G +++V+A
Sbjct: 90  QVLLNHNPQLAAEVDVYQRTPLHIACANGCIEMVRA 120

[Close]
BLAST of Lsi07G006040 vs. TrEMBL
Match: A0A067FCH3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0400552mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-12
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 1 

Query: 4   NDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLE 63
           +DE+S  K+Y A+ +G + SL  LM+ DP +++K   +S   +      LH+S   GHL+
Sbjct: 8   HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETP-----LHISALLGHLD 67

Query: 64  ITRLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQ 101
            T+ LL+H P+LA E+DSL+ +PLHLAS  G + IV+
Sbjct: 68  FTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVK 99

[Close]
BLAST of Lsi07G006040 vs. TrEMBL
Match: A0A067D7U8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0258762mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1 

Query: 4   NDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLE 63
           +DE+S  K+Y A+ +G + SL  LM+ D  +++K   +S   +      LH+S   GHL+
Sbjct: 8   HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETP-----LHISALLGHLD 67

Query: 64  ITRLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQ 101
            T+ LL+H P+LA E+DSL+ +PLHLA+  G + IV+
Sbjct: 68  FTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVK 99

[Close]
BLAST of Lsi07G006040 vs. NCBI nr
Match: gi|659128029|ref|XP_008464012.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-32
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 3   SNDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTH-PLLHLSISHGH 62
           S+ EE+ RK+Y  T+KGCIESLK LMEEDPY+IQ +V++SS+N+N+TH PLLHLSIS GH
Sbjct: 15  SSIEENTRKLYEVTEKGCIESLKILMEEDPYIIQTVVSTSSSNNNETHLPLLHLSISSGH 74

Query: 63  LEITRLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           LE TRLL+H+ PQLAAEVDSLQRTPLHLASKLG M+IV+A
Sbjct: 75  LEFTRLLIHYKPQLAAEVDSLQRTPLHLASKLGKMEIVEA 114

[Close]
BLAST of Lsi07G006040 vs. NCBI nr
Match: gi|659128031|ref|XP_008464013.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 1A-like isoform X2 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-32
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 3   SNDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTH-PLLHLSISHGH 62
           S+ EE+ RK+Y  T+KGCIESLK LMEEDPY+IQ +V++SS+N+N+TH PLLHLSIS GH
Sbjct: 15  SSIEENTRKLYEVTEKGCIESLKILMEEDPYIIQTVVSTSSSNNNETHLPLLHLSISSGH 74

Query: 63  LEITRLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           LE TRLL+H+ PQLAAEVDSLQRTPLHLASKLG M+IV+A
Sbjct: 75  LEFTRLLIHYKPQLAAEVDSLQRTPLHLASKLGKMEIVEA 114

[Close]
BLAST of Lsi07G006040 vs. NCBI nr
Match: gi|449446915|ref|XP_004141216.1| (PREDICTED: uncharacterized protein LOC101203970 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 1 

Query: 6   EESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLEIT 65
           +E+IRK+Y A +KGCIESLK L+EEDP +IQK+V SSSNN+   HPLLHLSIS+GHLE T
Sbjct: 18  QENIRKLYVAAEKGCIESLKTLIEEDPCIIQKVVISSSNNNENRHPLLHLSISNGHLEFT 77

Query: 66  RLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           RLL+H+ PQLAAEVD LQRTPLHLASKLG+ +IV+A
Sbjct: 78  RLLIHYEPQLAAEVDLLQRTPLHLASKLGETEIVEA 113

[Close]
BLAST of Lsi07G006040 vs. NCBI nr
Match: gi|659093595|ref|XP_008447612.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 57/102 (55.88%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 1   MCSNDEESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHG 60
           M S +E+ IRK+Y A+K GC+++LK L++++P LI K +  +S+ + +T PLLH+S+ HG
Sbjct: 26  MSSMEEDIIRKLYEASKIGCVQTLKTLIQDNPDLIHKALIYTSSITIET-PLLHVSVFHG 85

Query: 61  HLEITRLLLHHNPQLAAEVDSLQRTPLHLA-SKLGDMDIVQA 102
           HLE T+LLL HNPQLAAEVD+ QRTPLH+A S  GDM+I++A
Sbjct: 86  HLEFTQLLLDHNPQLAAEVDAFQRTPLHIACSNNGDMEIIRA 126

[Close]
BLAST of Lsi07G006040 vs. NCBI nr
Match: gi|659128037|ref|XP_008464016.1| (PREDICTED: ankyrin-1-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 6   EESIRKVYAATKKGCIESLKKLMEEDPYLIQKLVTSSSNNSNQTHPLLHLSISHGHLEIT 65
           EE I K+Y A+K GC+++LK L+++ PYLIQK +  +        PLLH+S+SHGHLE T
Sbjct: 30  EEDITKLYEASKIGCVQTLKTLIQQHPYLIQKALIYTIET-----PLLHVSVSHGHLEFT 89

Query: 66  RLLLHHNPQLAAEVDSLQRTPLHLASKLGDMDIVQA 102
           +LLL HNPQLAAEVD  +RTPLH+A   GD++IV+A
Sbjct: 90  QLLLDHNPQLAAEVDVFRRTPLHIACANGDIEIVRA 120

The following BLAST results are available for this feature:
BLAST of Lsi07G006040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G006040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFQ3_CUCSA2.7e-3172.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846590 PE=4 SV=1[more]
A0A0A0LMQ1_CUCSA2.1e-2055.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287040 PE=4 SV=1[more]
A0A0A0LCQ0_CUCSA5.2e-1956.25Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847090 PE=4 SV=1[more]
A0A067FCH3_CITSI4.7e-1242.27Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0400552mg PE=4 ... [more]
A0A067D7U8_CITSI8.9e-1140.21Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0258762mg PE=4 ... [more]
BLAST of Lsi07G006040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G006040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128029|ref|XP_008464012.1|4.5e-3274.00PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Cucumis ... [more]
gi|659128031|ref|XP_008464013.1|4.5e-3274.00PREDICTED: ankyrin repeat and SAM domain-containing protein 1A-like isoform X2 [... [more]
gi|449446915|ref|XP_004141216.1|3.8e-3172.92PREDICTED: uncharacterized protein LOC101203970 [Cucumis sativus][more]
gi|659093595|ref|XP_008447612.1|2.1e-2155.88PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo][more]
gi|659128037|ref|XP_008464016.1|1.4e-2056.25PREDICTED: ankyrin-1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G006040.1Lsi07G006040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 11..101
score: 9.0
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 31..100
score: 1.
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 48..100
score: 12
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 13..102
score: 2.49
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 6..101
score: 8.9
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 6..101
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G006040MELO3C025822.2Melon (DHL92) v3.6.1lsimedB456
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G006040Cucumber (Chinese Long) v3cuclsiB253
Lsi07G006040Cucumber (Chinese Long) v3cuclsiB254
Lsi07G006040Cucumber (Chinese Long) v3cuclsiB569
Lsi07G006040Watermelon (97103) v2lsiwmbB405
Lsi07G006040Watermelon (97103) v2lsiwmbB419
Lsi07G006040Wax gourdlsiwgoB579
Lsi07G006040Bottle gourd (USVL1VR-Ls)lsilsiB120
Lsi07G006040Cucumber (Gy14) v1cgylsiB327
Lsi07G006040Cucumber (Gy14) v1cgylsiB582
Lsi07G006040Cucumber (Gy14) v1cgylsiB556
Lsi07G006040Cucurbita maxima (Rimu)cmalsiB256
Lsi07G006040Cucurbita maxima (Rimu)cmalsiB361
Lsi07G006040Cucurbita maxima (Rimu)cmalsiB450
Lsi07G006040Cucurbita maxima (Rimu)cmalsiB845
Lsi07G006040Cucurbita moschata (Rifu)cmolsiB244
Lsi07G006040Cucurbita moschata (Rifu)cmolsiB349
Lsi07G006040Cucurbita moschata (Rifu)cmolsiB437
Lsi07G006040Cucurbita moschata (Rifu)cmolsiB829
Lsi07G006040Cucurbita pepo (Zucchini)cpelsiB127
Lsi07G006040Cucurbita pepo (Zucchini)cpelsiB276
Lsi07G006040Cucurbita pepo (Zucchini)cpelsiB472
Lsi07G006040Cucurbita pepo (Zucchini)cpelsiB516
Lsi07G006040Wild cucumber (PI 183967)cpilsiB232
Lsi07G006040Wild cucumber (PI 183967)cpilsiB233
Lsi07G006040Wild cucumber (PI 183967)cpilsiB548
Lsi07G006040Cucumber (Chinese Long) v2culsiB233
Lsi07G006040Cucumber (Chinese Long) v2culsiB234
Lsi07G006040Cucumber (Chinese Long) v2culsiB533
Lsi07G006040Melon (DHL92) v3.5.1lsimeB432
Lsi07G006040Melon (DHL92) v3.5.1lsimeB436
Lsi07G006040Watermelon (Charleston Gray)lsiwcgB386
Lsi07G006040Watermelon (Charleston Gray)lsiwcgB406
Lsi07G006040Watermelon (97103) v1lsiwmB425
Lsi07G006040Watermelon (97103) v1lsiwmB438
Lsi07G006040Cucumber (Gy14) v2cgyblsiB220
Lsi07G006040Cucumber (Gy14) v2cgyblsiB221
Lsi07G006040Cucumber (Gy14) v2cgyblsiB504
Lsi07G006040Melon (DHL92) v3.6.1lsimedB452
Lsi07G006040Silver-seed gourdcarlsiB109
Lsi07G006040Silver-seed gourdcarlsiB182
Lsi07G006040Silver-seed gourdcarlsiB939