Lsi07G005390 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G005390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribulose bisphosphate carboxylase large chain
Location	chr07 : 5708367 .. 5711027 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGTTCTATTCTATCCTCTTCACCCTTCTTCTATCCCCTCATATTTGTTCTTTTCTTTTCTTTTTTAATATAAATCGAGAATGATTAGGTGCAGCATAGTGAAAATTTTCAATCGAAAACTCGAATTTTGATAGTTTCGAAAATTTCCCTTAGTTTCTCAAATTTTCCATGAAAATTTCGAGAAAACTTTGTTTTTTTAAGCAATTAGCTACTAACTCAATAGAAGTTTTTTTTTAGCTTTATGGTCTTATCTTGATTACACAAATGGTGTAGTTTCACTATAGATGTGAGTTTTGTTTCTTTTAGCATCCAAATTTTTTTTTCTTTCAATAAATCACATATTTATTTTTAACTTCATTAAAAAAAAAATTGTATTTCATCACAAAATTGTATTTCTTTTACCATTCAAAGCTTTCATTTTCAAGAAATCAAATTTGAGAAAAATAATATATATTTATTTGATATTATTTTGTAATTATTTTTTATTTCTTTTTTAAATTTTTGCTCTCGCATCGACATTTACACATATATTTATAATATACATCCAAATTTTGTCTTACTTTATAGAAGTAATGATTAACAATGGTCAATTATAGTTTAATTAAACTATAATAAAAACTTCATTAACTAATTATAATAATTTCCATAATTTCCATAAAGTTTTTCAAAACTTCCATCAATGTCGATATTTTTATCTATATTTCCATAAAATCGGGACCTCAATATTTCAAACTTTGGGTGCAATTCATGCTTCTCTTTCTTCTACAAGTAAAGAAAAATTAAAAACAATTCATTTTTTTAAAAAAAAAACTTGCCACAACAAATTTTTACTGAACAATTGTTTGTGTTGCACAAAGATTGGTGCAACTCAAGCAGCATCCAATTTTTCTCAAATTAATTAAACTTATAAACACTACTCCCACCTATAGTTTTTAACTTTTTTCTTTTTATTGAAATTTAGCTAAGAATTTTAATGTTTAGTTAGTAAAGATGAAAGCCTAAAGTTCTGAAACCATATTAATTTGAGTATATTATTGAATCAAAGGCTGTAATTTACATTTCAAATACATCTTTGATCAATTGAATCTAAAAGGAAAGTTTGCATAATTTAAGACCTAATTGAATCTAATTACATTAGTTATATTAACTATATTGATGTTTTCAAAAACCAAGTCAAGTTTTGAAAACTAAAAAAAAGTAGTTTTTAAAAACTTATTTATGTATTTAGATTTTGATTAATAATTCAAATATTTTTTTATAAAAAAAAGTGAAAAACATGGTAAGAAAACCGGTAGGAAACGATATATTAATTTTGAAATAGAAAATTAAAAACAAAATAACTATCAAACGAAACCTTAATTAGATGTTAGGTCCCATTTTGGTGACGATTTCATTTTTAATCTTCTCTTTTAGAAATGTATATTTATTTTCTCTAAAATTTTCAATTATACTTTTCACTTTTTTTTTTTGTTAAGCAAGACTTGAATTTTTAATCAAATTTTAAAAGTAAAAACAAGTTCTCGAGACCTGTATTTTGTAGTTTTCGAATTTTGGATTCTTCTTCCAAATGCAGGATAACCCCGAGGGGTTGCGAGTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATGGGGATGGTCTACAGGGTTCATAACTACTTCTCTTACTACAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATGTATGGTCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTTCTTTTTGATCAATCAAAACACCTCTCCAAACGGTACAAGCTTCTTCCAAAGCATATGGCTTTCTAGATGTAGATGTTGATATCTATACATATGGATCTTATATATATATATATATCTCGTACAATGAAGTTTTTGAAAATATGAGTAGATGTGTGAATTAAAAAAAAATAATAAATGAAAATAGTGTTTATAACCTAATATTGATAAACAAAAAACTAAAAACGAAAAGAACATAAAAACGGACCTTGCTTTATTAATTTTCTTATTTACCCTTTTTGTAGTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

mRNA sequence

ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

Coding sequence (CDS)

ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

Protein sequence

MRSLNNVVVIVMEHALCYSCLIHHYYYCFVCGSRQELALGFAFTAQRHSTNNRKGRLPSQHLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISMLLSISKRKWEYIVIASMALTLPIDDEDHVSVDIIENALAISNTPIIGDDDSQVSTHIGNALAINNLPTDGHLVSVDIIR

Homology

[Close]

BLAST of Lsi07G005390 vs. Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VA+ PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. TrEMBL
Match: M0ZYJ3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004211 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQ LDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPA
Sbjct: 333 RLPSQRLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPA 392

Query: 128 ALANCPLFSSVISML 143
           ALANCP F SVISML
Sbjct: 393 ALANCPPFPSVISML 407

[Close]

BLAST of Lsi07G005390 vs. TrEMBL
Match: V9MG98_9POAL (Orf137 OS=Pharus lappulaceus GN=orf137 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF DIKRTSP+GN NVAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDIKRTSPDGNLNVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. TrEMBL
Match: A0A0D2S9F8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G083900 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 72  QHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALAN 131
           QHLD ALP+LFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF +APAAL N
Sbjct: 8   QHLDSALPRLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFASAPAALVN 67

Query: 132 CPLFSSVISML 143
           CP   SVISML
Sbjct: 68  CPPLPSVISML 78

[Close]

BLAST of Lsi07G005390 vs. TrEMBL
Match: R4HGB9_9POAL (Orf137 OS=Pharus latifolius GN=orf137 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF DIKRTSP+GN NVAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDIKRTSPDGNLNVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. TrEMBL
Match: A0A151U2H8_CAJCA (Uncharacterized protein ycf72 (Fragment) OS=Cajanus cajan GN=KK1_006131 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.9e-26
Identity = 61/67 (91.04%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 76  PALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLF 135
           PALPK FW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F
Sbjct: 1   PALPKFFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPF 60

Query: 136 SSVISML 143
            SVISML
Sbjct: 61  PSVISML 67

[Close]

BLAST of Lsi07G005390 vs. NCBI nr
Match: gi|763773816|gb|KJB40939.1| (hypothetical protein B456_007G083900 [Gossypium raimondii])

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 72  QHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALAN 131
           QHLD ALP+LFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF +APAAL N
Sbjct: 8   QHLDSALPRLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFASAPAALVN 67

Query: 132 CPLFSSVISML 143
           CP   SVISML
Sbjct: 68  CPPLPSVISML 78

[Close]

BLAST of Lsi07G005390 vs. NCBI nr
Match: gi|511347615|ref|YP_008080537.1| (orf137 (chloroplast) [Pharus latifolius])

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF DIKRTSP+GN NVAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDIKRTSPDGNLNVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]

BLAST of Lsi07G005390 vs. NCBI nr
Match: gi|1012362322|gb|KYP73505.1| (Uncharacterized protein ycf72, partial [Cajanus cajan])

HSP 1 Score: 125.9 bits (315), Expect = 8.5e-26
Identity = 61/67 (91.04%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 76  PALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLF 135
           PALPK FW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F
Sbjct: 1   PALPKFFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPF 60

Query: 136 SSVISML 143
            SVISML
Sbjct: 61  PSVISML 67

[Close]

BLAST of Lsi07G005390 vs. NCBI nr
Match: gi|763747422|gb|KJB14861.1| (hypothetical protein B456_002G146700, partial [Gossypium raimondii])

HSP 1 Score: 125.9 bits (315), Expect = 8.5e-26
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 69  LPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAA 128
           LPSQHLDP LPKLFW TP FPTCPTVAEQFLDIK TSPEG FNVA+FPSF ISF TAPAA
Sbjct: 24  LPSQHLDPTLPKLFWFTPTFPTCPTVAEQFLDIKWTSPEGYFNVANFPSFVISFATAPAA 83

Query: 129 LANCPLFSSVISML 143
           L NCP   SVIS+L
Sbjct: 84  LVNCPPLPSVISIL 97

[Close]

BLAST of Lsi07G005390 vs. NCBI nr
Match: gi|11466831|ref|NP_039428.1| (hypothetical protein OrsajCp070 [Oryza sativa Japonica Group])

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

The following BLAST results are available for this feature:

BLAST of Lsi07G005390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF72_ORYNI	4.5e-27	78.67	Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1	[more]
YCF72_ORYSA	4.5e-27	78.67	Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1	[more]
YCF72_ORYSI	4.5e-27	78.67	Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1	[more]
YCF72_ORYSJ	4.5e-27	78.67	Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV...	[more]
YCF72_MAIZE	1.7e-26	77.33	Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1	[more]

BLAST of Lsi07G005390 vs. TrEMBL


Match Name	E-value	Identity	Description
M0ZYJ3_SOLTU	3.0e-30	90.67	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004211 PE=3 SV=1	[more]
V9MG98_9POAL	2.6e-26	81.33	Orf137 OS=Pharus lappulaceus GN=orf137 PE=4 SV=1	[more]
A0A0D2S9F8_GOSRA	2.6e-26	85.92	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G083900 PE=4 SV=1	[more]
R4HGB9_9POAL	2.6e-26	81.33	Orf137 OS=Pharus latifolius GN=orf137 PE=4 SV=1	[more]
A0A151U2H8_CAJCA	5.9e-26	91.04	Uncharacterized protein ycf72 (Fragment) OS=Cajanus cajan GN=KK1_006131 PE=4 SV=...	[more]

BLAST of Lsi07G005390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G005390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763773816\|gb\|KJB40939.1\|	3.8e-26	85.92	hypothetical protein B456_007G083900 [Gossypium raimondii]	[more]
gi\|511347615\|ref\|YP_008080537.1\|	3.8e-26	81.33	orf137 (chloroplast) [Pharus latifolius]	[more]
gi\|1012362322\|gb\|KYP73505.1\|	8.5e-26	91.04	Uncharacterized protein ycf72, partial [Cajanus cajan]	[more]
gi\|763747422\|gb\|KJB14861.1\|	8.5e-26	82.43	hypothetical protein B456_002G146700, partial [Gossypium raimondii]	[more]
gi\|11466831\|ref\|NP_039428.1\|	7.2e-25	78.67	hypothetical protein OrsajCp070 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G005390.1	Lsi07G005390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37377	FAMILY NOT NAMED	coord: 69..142 score: 3.1
None	No IPR available	PANTHER	PTHR37377:SF1	SUBFAMILY NOT NAMED	coord: 69..142 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G005390	Cucumber (Gy14) v1	cgylsiB166
Lsi07G005390	Cucumber (Gy14) v1	cgylsiB582
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB080
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB150
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB361
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB450
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB736
Lsi07G005390	Cucurbita maxima (Rimu)	cmalsiB845
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB067
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB137
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB174
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB349
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB437
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB727
Lsi07G005390	Cucurbita moschata (Rifu)	cmolsiB829
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB127
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB276
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB310
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB472
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G005390	Cucurbita pepo (Zucchini)	cpelsiB574
Lsi07G005390	Wild cucumber (PI 183967)	cpilsiB082
Lsi07G005390	Wild cucumber (PI 183967)	cpilsiB138
Lsi07G005390	Wild cucumber (PI 183967)	cpilsiB548
Lsi07G005390	Cucumber (Chinese Long) v2	culsiB084
Lsi07G005390	Cucumber (Chinese Long) v2	culsiB139
Lsi07G005390	Cucumber (Chinese Long) v2	culsiB533
Lsi07G005390	Melon (DHL92) v3.5.1	lsimeB432
Lsi07G005390	Melon (DHL92) v3.5.1	lsimeB433
Lsi07G005390	Melon (DHL92) v3.5.1	lsimeB436
Lsi07G005390	Melon (DHL92) v3.5.1	lsimeB442
Lsi07G005390	Watermelon (Charleston Gray)	lsiwcgB386
Lsi07G005390	Watermelon (Charleston Gray)	lsiwcgB398
Lsi07G005390	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G005390	Watermelon (97103) v1	lsiwmB423
Lsi07G005390	Watermelon (97103) v1	lsiwmB433
Lsi07G005390	Watermelon (97103) v1	lsiwmB438
Lsi07G005390	Watermelon (97103) v1	lsiwmB459
Lsi07G005390	Cucumber (Gy14) v2	cgyblsiB078
Lsi07G005390	Cucumber (Gy14) v2	cgyblsiB125
Lsi07G005390	Cucumber (Gy14) v2	cgyblsiB504
Lsi07G005390	Melon (DHL92) v3.6.1	lsimedB456
Lsi07G005390	Melon (DHL92) v3.6.1	lsimedB452
Lsi07G005390	Melon (DHL92) v3.6.1	lsimedB453
Lsi07G005390	Melon (DHL92) v3.6.1	lsimedB461
Lsi07G005390	Silver-seed gourd	carlsiB087
Lsi07G005390	Silver-seed gourd	carlsiB109
Lsi07G005390	Silver-seed gourd	carlsiB182
Lsi07G005390	Silver-seed gourd	carlsiB520
Lsi07G005390	Silver-seed gourd	carlsiB685
Lsi07G005390	Silver-seed gourd	carlsiB939
Lsi07G005390	Cucumber (Chinese Long) v3	cuclsiB092
Lsi07G005390	Cucumber (Chinese Long) v3	cuclsiB149
Lsi07G005390	Cucumber (Chinese Long) v3	cuclsiB569
Lsi07G005390	Watermelon (97103) v2	lsiwmbB397
Lsi07G005390	Watermelon (97103) v2	lsiwmbB399
Lsi07G005390	Watermelon (97103) v2	lsiwmbB405
Lsi07G005390	Watermelon (97103) v2	lsiwmbB419
Lsi07G005390	Wax gourd	lsiwgoB557
Lsi07G005390	Wax gourd	lsiwgoB581
Lsi07G005390	Bottle gourd (USVL1VR-Ls)	lsilsiB062
Lsi07G005390	Bottle gourd (USVL1VR-Ls)	lsilsiB120
Lsi07G005390	Bottle gourd (USVL1VR-Ls)	lsilsiB163