Lsi07G004300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G004300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Serine-rich protein-related
Location	chr07 : 4603321 .. 4603917 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCCGTTCGGAGCCAAATCTCGACAATCCGTCTCATCCTTCCCGTCGCGAGGCTACCTTTCTTCTCCGTCGGCTTTCGCTTCGTCGAGTACGGCTTTCGTGTCTCGACCGTCGTTTACGAAGCCTGTGGCAATGTCTAGAAAATCGTCTTCTTCGTCTTCGTCTACGTCGTCGGCGGCGGCATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCGGTTCAGAAGAATCACGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCATTCAGGTGTTCTCTCCACAAGAATTCGAGGTACTCTGTAAATGTCGTAAATCGCAGCCAATTCCAGAACGGATCGTTGAGTATCCGGAGATCGGCAATGACGAATTCGCTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTCGTGAAAAGAGCTTTATCGGCTTTAACTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCTGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGAGCAGAGGAGGAATAG

mRNA sequence

ATGGCTTCTCCGTTCGGAGCCAAATCTCGACAATCCGTCTCATCCTTCCCGTCGCGAGGCTACCTTTCTTCTCCGTCGGCTTTCGCTTCGTCGAGTACGGCTTTCGTGTCTCGACCGTCGTTTACGAAGCCTGTGGCAATGTCTAGAAAATCGTCTTCTTCGTCTTCGTCTACGTCGTCGGCGGCGGCATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCGGTTCAGAAGAATCACGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCATTCAGGTGTTCTCTCCACAAGAATTCGAGGTACTCTGTAAATGTCGTAAATCGCAGCCAATTCCAGAACGGATCGTTGAGTATCCGGAGATCGGCAATGACGAATTCGCTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTCGTGAAAAGAGCTTTATCGGCTTTAACTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCTGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGAGCAGAGGAGGAATAG

Coding sequence (CDS)

ATGGCTTCTCCGTTCGGAGCCAAATCTCGACAATCCGTCTCATCCTTCCCGTCGCGAGGCTACCTTTCTTCTCCGTCGGCTTTCGCTTCGTCGAGTACGGCTTTCGTGTCTCGACCGTCGTTTACGAAGCCTGTGGCAATGTCTAGAAAATCGTCTTCTTCGTCTTCGTCTACGTCGTCGGCGGCGGCATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCGGTTCAGAAGAATCACGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCATTCAGGTGTTCTCTCCACAAGAATTCGAGGTACTCTGTAAATGTCGTAAATCGCAGCCAATTCCAGAACGGATCGTTGAGTATCCGGAGATCGGCAATGACGAATTCGCTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTCGTGAAAAGAGCTTTATCGGCTTTAACTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCTGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGAGCAGAGGAGGAATAG

Protein sequence

MASPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSSAAASSVRFQIDQRSASPSRSISVQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKNSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSAFLPRPSRLSVMSRAEEE

Homology

[Close]

BLAST of Lsi07G004300 vs. TrEMBL
Match: A0A0A0KWX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006290 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.1e-61
Identity = 147/200 (73.50%), Postives = 161/200 (80.50%), Query Frame = 1


Query: 1   MASPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSS 60
           MASP GA+SRQS +S  SR Y++S SAFASSSTAF SRPS TKPV MSRKSS        
Sbjct: 1   MASPSGAESRQSATSLRSRCYITSHSAFASSSTAFTSRPSSTKPVTMSRKSS-------- 60

Query: 61  AAASSVRFQIDQRSASPSR-SISVQKNHDRNANAVSSNKKKT-CMCSPTKHPGSFRCSLH 120
                +RFQ DQRSASPSR S+SVQKN D NANAV SNKKK  CMCSPTKHPGSFRCSLH
Sbjct: 61  -----LRFQTDQRSASPSRRSVSVQKNRDSNANAVPSNKKKVMCMCSPTKHPGSFRCSLH 120

Query: 121 KNSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRR 180
           KNS +S+++ N SQF+N SL+IRRSAMTNSLVRI  VEGADLVKRALSAL RPSSHQQRR
Sbjct: 121 KNSTHSIDISNGSQFRNVSLNIRRSAMTNSLVRIECVEGADLVKRALSALIRPSSHQQRR 180

Query: 181 RSAFLPRPSRLSVMSRAEEE 199
           +SAF  RPS LSVMS+AEEE
Sbjct: 181 QSAFQRRPSHLSVMSKAEEE 187

[Close]

BLAST of Lsi07G004300 vs. TrEMBL
Match: A0A103XN37_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004185 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 97/171 (56.73%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 23  SSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSSAAASSVRFQIDQRSASPSRSIS 82
           SS S+FAS+S+AF +R S       +  +  +   TSS+++SSVRF +D RS SPSRSIS
Sbjct: 27  SSTSSFASTSSAFSARSSSFFQQRPASPAPVNIYGTSSSSSSSVRFSLDNRSISPSRSIS 86

Query: 83  -VQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKNSRYSVNVVNRSQFQNGSLSIR 142
            + +NH++         K+TCMCSPT HPGSFRCSLHKNS  + +  + + + +  L+ R
Sbjct: 87  SLPRNHNQAVKKQLETPKRTCMCSPTSHPGSFRCSLHKNSNNNNSHNHTASYPSNRLNAR 146

Query: 143 RSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSAFLPRPSRLSVM 193
           RSAMTNSLVRIG VEG DLVKRAL+AL RPSSHQQ+RR++F PRPSRLSVM
Sbjct: 147 RSAMTNSLVRIGTVEGGDLVKRALAALIRPSSHQQKRRTSFQPRPSRLSVM 197

[Close]

BLAST of Lsi07G004300 vs. TrEMBL
Match: A0A0D2RS30_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013700 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 112/198 (56.57%), Postives = 135/198 (68.18%), Query Frame = 1


Query: 3   SPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPS--FTKPVAMSRKSSSSSSSTSS 62
           SP G  S   VS  PS    SS SAFA SS++F SR S  F +P ++S    +  + T S
Sbjct: 17  SPSGRFSSHYVSHSPS----SSSSAFAYSSSSFTSRSSTFFNQPRSISPPRVNVYNHTQS 76

Query: 63  AAASSVRFQIDQRSASPSRSIS-VQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHK 122
           +   SVRF +D R  SP+RSIS V++N +   N  S   K+TCMCSPT HPGSFRCSLHK
Sbjct: 77  S--QSVRFSLDSRPISPNRSISAVRRNTEALRNLQSKQPKRTCMCSPTTHPGSFRCSLHK 136

Query: 123 NSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRR 182
              ++ +  +     +  L+ RRSAMTNSLVRIGGVEG DLVKRALSAL RPSSHQQRRR
Sbjct: 137 G--FNNSHASSGYAPSNRLNARRSAMTNSLVRIGGVEG-DLVKRALSALIRPSSHQQRRR 196

Query: 183 SAFLPRPSRLSVMSRAEE 198
           +AF PRPSRLSVMS+AE+
Sbjct: 197 AAFQPRPSRLSVMSKAED 205

[Close]

BLAST of Lsi07G004300 vs. TrEMBL
Match: A0A059AJL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03089 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-34
Identity = 110/198 (55.56%), Postives = 129/198 (65.15%), Query Frame = 1


Query: 5   FGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSSAAAS 64
           F A SR S++S  S G+ SS S+F++ S+ F SR +    V MS  SS SSSS       
Sbjct: 17  FHAPSR-SIASSSSSGFASSSSSFSARSSTFFSRGASPPRVRMSGHSSQSSSS------- 76

Query: 65  SVRFQIDQRSASPSRSISVQKNHDRNANA-----VSSNKKKTCMCSPTKHPGSFRCSLHK 124
            VRF ID R  SP RSISV+                 N+KKTCMCSPT HPGSFRC+LHK
Sbjct: 77  -VRFSID-RPTSPGRSISVRNQIGGGGGGGGRATTVPNQKKTCMCSPTSHPGSFRCALHK 136

Query: 125 NSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRR 184
           NSR +    + +   + SL+ RRSAMTNSLVRIGGVEG DLVKRAL+AL RPSSHQ RRR
Sbjct: 137 NSRSNPQHHSGTYNSSRSLNFRRSAMTNSLVRIGGVEG-DLVKRALAALIRPSSHQLRRR 196

Query: 185 SAFLPRPSRLSVMSRAEE 198
           + F PRPSRLS MS AE+
Sbjct: 197 ADFKPRPSRLSTMSSAED 203

[Close]

BLAST of Lsi07G004300 vs. TrEMBL
Match: M5VR32_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011611mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-34
Identity = 107/182 (58.79%), Postives = 130/182 (71.43%), Query Frame = 1


Query: 23  SSPSAFASSSTAFVSRPS--FTKPVAMSRKSSSSSSSTSSAAASSVRFQIDQRSASPSRS 82
           SS SAFASS+++F SR S  F +  + +R + +S    SS +A SVRF +D R  SPSRS
Sbjct: 30  SSSSAFASSTSSFSSRSSSFFQRAASPTRLNLAS----SSPSAQSVRFSLD-RPISPSRS 89

Query: 83  ISVQKNHDRN-ANAVS----SNKKKTCMCSPTKHPGSFRCSLHKNSRYSVNVVNRSQFQN 142
           ISV  + + N  NAV     SN+K+TCMCSPT HPGSFRCSLHKN  +S +V   + +  
Sbjct: 90  ISVTPHGNSNHHNAVKSRQISNQKRTCMCSPTNHPGSFRCSLHKN--FSSHVTASAPYSQ 149

Query: 143 GSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSAFLPRPSRLSVMSRA 198
             L+ RRSAMTNSLVRIGGVEG DLV+RALSAL RPSSH QRRR+ F PRPSRLS MS++
Sbjct: 150 NRLNARRSAMTNSLVRIGGVEG-DLVRRALSALIRPSSHSQRRRADFRPRPSRLSTMSKS 203

[Close]

BLAST of Lsi07G004300 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-29
Identity = 99/197 (50.25%), Postives = 127/197 (64.47%), Query Frame = 1


Query: 6   GAKSRQSVSSFPSR-GYLSSPSA-FASSSTAFVSRPSFTKPVAMSRKSSSSSSS---TSS 65
           G  S +  SS PS  G+ SS S+ F+S STAF S  S  +      +S+S +     TS+
Sbjct: 28  GVYSNRMPSSSPSSSGFASSTSSSFSSPSTAFFS--SHNQNNHHQHRSASPTRVNLFTSA 87

Query: 66  AAASSVRFQIDQRSASPSRSISVQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKN 125
               S R+ ID RS SP+RSI+V  N   N + +  ++++ CMCSPT HPGSFRCSLHKN
Sbjct: 88  PMTQSFRYSIDNRSISPNRSIAVSSNKPSNHHKIPDSRRR-CMCSPTTHPGSFRCSLHKN 147

Query: 126 SRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRS 185
                     S   NG L++RRSAMTNSLVRIGGVEG + V+RAL+ L RPSSHQ +RRS
Sbjct: 148 VANPHGQGTASYTTNG-LNMRRSAMTNSLVRIGGVEG-EWVRRALTTLIRPSSHQLKRRS 207

Query: 186 AFLPRPSRLSVMSRAEE 198
           A+ PR SRL+ MS+AE+
Sbjct: 208 AYEPRRSRLASMSKAED 219

[Close]

BLAST of Lsi07G004300 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-28
Identity = 94/196 (47.96%), Postives = 122/196 (62.24%), Query Frame = 1


Query: 6   GAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSS---TSSAA 65
           G  SR   SS  S    S+ S+F+S S+AF S     +      +S+S +     T+   
Sbjct: 26  GGYSRAVPSSSSSAFASSTSSSFSSPSSAFFSNHRHHESNHSHHRSASPTRVNLYTAQPM 85

Query: 66  ASSVRFQIDQRSASPS-RSISVQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKNS 125
           + S R+ +D RS SP+ +SISV KN   + N   S +   CMCSPT HPGSFRCSLHKN 
Sbjct: 86  SQSFRYSLDSRSISPTNKSISVSKNQPPSHNHKISRR---CMCSPTTHPGSFRCSLHKNV 145

Query: 126 RYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSA 185
                    S   NG L++RRSAMTNSLVRIGGVEG + V+RAL+ L RPSSH  +RR+A
Sbjct: 146 ANPHGQGTASYTTNG-LNMRRSAMTNSLVRIGGVEG-EWVRRALTTLIRPSSHHLKRRAA 205

Query: 186 FLPRPSRLSVMSRAEE 198
           + PRPSRLS+M++A+E
Sbjct: 206 YQPRPSRLSIMAKADE 216

[Close]

BLAST of Lsi07G004300 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 1


Query: 94  VSSNK--KKTCMCSPTKHPGSFRCSLH------KNSRYSVNVVNRSQ------FQNGSLS 153
           VSSN   K+ C+CSPT HPGSFRCS H      K+   + + V R+         N  L+
Sbjct: 61  VSSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLN 120

Query: 154 IRRSAMTNSLVRIGGVEGADLVKRALSA-LTRPSSHQQRRRSAFLPRPSR 189
           +R+ A+ NSL +IG VE A+  +R+L+A L +PSS    RR  F PR SR
Sbjct: 121 LRKLALMNSLAKIGSVE-AERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169

[Close]

BLAST of Lsi07G004300 vs. NCBI nr
Match: gi|659108435|ref|XP_008454197.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 3.7e-65
Identity = 153/198 (77.27%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 1   MASPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSS 60
           MASP GA+S QS +S  SR Y  S SAFASSSTAF SRPS TKPVAMSRKSS ++  T+S
Sbjct: 1   MASPSGAESPQSATSLRSRCYFISHSAFASSSTAFTSRPSSTKPVAMSRKSSPAAVLTAS 60

Query: 61  AAASSVRFQIDQRSASPSRSISVQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKN 120
              SS+RFQIDQRSASPSRSISVQKN D NANAV SNK+K C+CSPTKHPGSFRCSLHKN
Sbjct: 61  TV-SSLRFQIDQRSASPSRSISVQKNRDSNANAVPSNKRKVCVCSPTKHPGSFRCSLHKN 120

Query: 121 SRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRS 180
           S +SV+V N SQ +NGSL++RRSAMTNSLVRIG VEGADLVKRALSAL RPSSHQQRR S
Sbjct: 121 STHSVDVSNGSQLRNGSLNVRRSAMTNSLVRIGCVEGADLVKRALSALIRPSSHQQRRPS 180

Query: 181 AFLPRPSRLSVMSRAEEE 199
           AF  RPSRLS+MS+AEEE
Sbjct: 181 AFQRRPSRLSLMSKAEEE 197

[Close]

BLAST of Lsi07G004300 vs. NCBI nr
Match: gi|449469250|ref|XP_004152334.1| (PREDICTED: uncharacterized protein LOC101207294 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 7.3e-61
Identity = 147/200 (73.50%), Postives = 161/200 (80.50%), Query Frame = 1


Query: 1   MASPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSS 60
           MASP GA+SRQS +S  SR Y++S SAFASSSTAF SRPS TKPV MSRKSS        
Sbjct: 1   MASPSGAESRQSATSLRSRCYITSHSAFASSSTAFTSRPSSTKPVTMSRKSS-------- 60

Query: 61  AAASSVRFQIDQRSASPSR-SISVQKNHDRNANAVSSNKKKT-CMCSPTKHPGSFRCSLH 120
                +RFQ DQRSASPSR S+SVQKN D NANAV SNKKK  CMCSPTKHPGSFRCSLH
Sbjct: 61  -----LRFQTDQRSASPSRRSVSVQKNRDSNANAVPSNKKKVMCMCSPTKHPGSFRCSLH 120

Query: 121 KNSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRR 180
           KNS +S+++ N SQF+N SL+IRRSAMTNSLVRI  VEGADLVKRALSAL RPSSHQQRR
Sbjct: 121 KNSTHSIDISNGSQFRNVSLNIRRSAMTNSLVRIECVEGADLVKRALSALIRPSSHQQRR 180

Query: 181 RSAFLPRPSRLSVMSRAEEE 199
           +SAF  RPS LSVMS+AEEE
Sbjct: 181 QSAFQRRPSHLSVMSKAEEE 187

[Close]

BLAST of Lsi07G004300 vs. NCBI nr
Match: gi|976906313|gb|KVH93758.1| (hypothetical protein Ccrd_004185 [Cynara cardunculus var. scolymus])

HSP 1 Score: 156.4 bits (394), Expect = 5.3e-35
Identity = 97/171 (56.73%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 23  SSPSAFASSSTAFVSRPSFTKPVAMSRKSSSSSSSTSSAAASSVRFQIDQRSASPSRSIS 82
           SS S+FAS+S+AF +R S       +  +  +   TSS+++SSVRF +D RS SPSRSIS
Sbjct: 27  SSTSSFASTSSAFSARSSSFFQQRPASPAPVNIYGTSSSSSSSVRFSLDNRSISPSRSIS 86

Query: 83  -VQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHKNSRYSVNVVNRSQFQNGSLSIR 142
            + +NH++         K+TCMCSPT HPGSFRCSLHKNS  + +  + + + +  L+ R
Sbjct: 87  SLPRNHNQAVKKQLETPKRTCMCSPTSHPGSFRCSLHKNSNNNNSHNHTASYPSNRLNAR 146

Query: 143 RSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSAFLPRPSRLSVM 193
           RSAMTNSLVRIG VEG DLVKRAL+AL RPSSHQQ+RR++F PRPSRLSVM
Sbjct: 147 RSAMTNSLVRIGTVEGGDLVKRALAALIRPSSHQQKRRTSFQPRPSRLSVM 197

[Close]

BLAST of Lsi07G004300 vs. NCBI nr
Match: gi|645275639|ref|XP_008242917.1| (PREDICTED: putative protein TPRXL [Prunus mume])

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 108/182 (59.34%), Postives = 131/182 (71.98%), Query Frame = 1


Query: 23  SSPSAFASSSTAFVSRPS--FTKPVAMSRKSSSSSSSTSSAAASSVRFQIDQRSASPSRS 82
           SS SAFASS+++F SR S  F +P + +R + + SSS+    A SVRF +D R  SPSRS
Sbjct: 30  SSSSAFASSTSSFSSRSSTFFQRPTSPTRLNLARSSSS----AQSVRFSLD-RPISPSRS 89

Query: 83  ISVQKNHDRNA-NAVS----SNKKKTCMCSPTKHPGSFRCSLHKNSRYSVNVVNRSQFQN 142
           ISV  + + N  NAV     SN+K+TCMCSPT HPGSFRCSLHKN  +S +V   + +  
Sbjct: 90  ISVTPHGNGNHHNAVKSRQISNQKRTCMCSPTNHPGSFRCSLHKN--FSSHVTASAPYSQ 149

Query: 143 GSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRRSAFLPRPSRLSVMSRA 198
             L+ RRSAMTNSLVRIGGVEG DLV+RALSAL RPSSH QRRR+ F PRPSRLS MS++
Sbjct: 150 NRLNARRSAMTNSLVRIGGVEG-DLVRRALSALIRPSSHSQRRRADFRPRPSRLSTMSKS 203

[Close]

BLAST of Lsi07G004300 vs. NCBI nr
Match: gi|823226238|ref|XP_012445937.1| (PREDICTED: uncharacterized protein LOC105769688 [Gossypium raimondii])

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 112/198 (56.57%), Postives = 135/198 (68.18%), Query Frame = 1


Query: 3   SPFGAKSRQSVSSFPSRGYLSSPSAFASSSTAFVSRPS--FTKPVAMSRKSSSSSSSTSS 62
           SP G  S   VS  PS    SS SAFA SS++F SR S  F +P ++S    +  + T S
Sbjct: 17  SPSGRFSSHYVSHSPS----SSSSAFAYSSSSFTSRSSTFFNQPRSISPPRVNVYNHTQS 76

Query: 63  AAASSVRFQIDQRSASPSRSIS-VQKNHDRNANAVSSNKKKTCMCSPTKHPGSFRCSLHK 122
           +   SVRF +D R  SP+RSIS V++N +   N  S   K+TCMCSPT HPGSFRCSLHK
Sbjct: 77  S--QSVRFSLDSRPISPNRSISAVRRNTEALRNLQSKQPKRTCMCSPTTHPGSFRCSLHK 136

Query: 123 NSRYSVNVVNRSQFQNGSLSIRRSAMTNSLVRIGGVEGADLVKRALSALTRPSSHQQRRR 182
              ++ +  +     +  L+ RRSAMTNSLVRIGGVEG DLVKRALSAL RPSSHQQRRR
Sbjct: 137 G--FNNSHASSGYAPSNRLNARRSAMTNSLVRIGGVEG-DLVKRALSALIRPSSHQQRRR 196

Query: 183 SAFLPRPSRLSVMSRAEE 198
           +AF PRPSRLSVMS+AE+
Sbjct: 197 AAFQPRPSRLSVMSKAED 205

The following BLAST results are available for this feature:

BLAST of Lsi07G004300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G004300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX3_CUCSA	5.1e-61	73.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006290 PE=4 SV=1	[more]
A0A103XN37_CYNCS	3.7e-35	56.73	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004185 PE=4 ...	[more]
A0A0D2RS30_GOSRA	1.4e-34	56.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013700 PE=4 SV=1	[more]
A0A059AJL4_EUCGR	5.3e-34	55.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03089 PE=4 SV=1	[more]
M5VR32_PRUPE	9.0e-34	58.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011611mg PE=4 SV=1	[more]

BLAST of Lsi07G004300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25280.1	1.2e-29	50.25	serine-rich protein-related	[more]
AT5G11090.1	3.9e-28	47.96	serine-rich protein-related	[more]
AT5G20370.1	2.5e-11	43.64	serine-rich protein-related	[more]

BLAST of Lsi07G004300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108435\|ref\|XP_008454197.1\|	3.7e-65	77.27	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|449469250\|ref\|XP_004152334.1\|	7.3e-61	73.50	PREDICTED: uncharacterized protein LOC101207294 [Cucumis sativus]	[more]
gi\|976906313\|gb\|KVH93758.1\|	5.3e-35	56.73	hypothetical protein Ccrd_004185 [Cynara cardunculus var. scolymus]	[more]
gi\|645275639\|ref\|XP_008242917.1\|	2.0e-34	59.34	PREDICTED: putative protein TPRXL [Prunus mume]	[more]
gi\|823226238\|ref\|XP_012445937.1\|	2.0e-34	56.57	PREDICTED: uncharacterized protein LOC105769688 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004300.1	Lsi07G004300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 7..198 score: 1.9
None	No IPR available	PANTHER	PTHR33132:SF12	SUBFAMILY NOT NAMED	coord: 7..198 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G004300	Csa4G006290	Cucumber (Chinese Long) v2	culsiB312
Lsi07G004300	CSPI04G01850	Wild cucumber (PI 183967)	cpilsiB311
Lsi07G004300	Cucsa.096140	Cucumber (Gy14) v1	cgylsiB113
Lsi07G004300	CmaCh14G013640	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G004300	CmoCh14G013990	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G004300	Cla012736	Watermelon (97103) v1	lsiwmB438
Lsi07G004300	MELO3C017851	Melon (DHL92) v3.5.1	lsimeB447
Lsi07G004300	ClCG07G012320	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G004300	MELO3C017851.2	Melon (DHL92) v3.6.1	lsimedB465
Lsi07G004300	Cla97C07G139100	Watermelon (97103) v2	lsiwmbB405
Lsi07G004300	Bhi01G002791	Wax gourd	lsiwgoB558
Lsi07G004300	Cp4.1LG03g13420	Cucurbita pepo (Zucchini)	cpelsiB515
Lsi07G004300	CsGy4G001770	Cucumber (Gy14) v2	cgyblsiB285
Lsi07G004300	Carg06519	Silver-seed gourd	carlsiB109
Lsi07G004300	CsaV3_4G001820	Cucumber (Chinese Long) v3	cuclsiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G004300	Silver-seed gourd	carlsiB182
Lsi07G004300	Silver-seed gourd	carlsiB183
Lsi07G004300	Cucumber (Chinese Long) v3	cuclsiB150
Lsi07G004300	Cucumber (Chinese Long) v3	cuclsiB568
Lsi07G004300	Watermelon (97103) v2	lsiwmbB420
Lsi07G004300	Bottle gourd (USVL1VR-Ls)	lsilsiB117
Lsi07G004300	Cucumber (Gy14) v1	cgylsiB136
Lsi07G004300	Cucurbita maxima (Rimu)	cmalsiB449
Lsi07G004300	Cucurbita maxima (Rimu)	cmalsiB450
Lsi07G004300	Cucurbita maxima (Rimu)	cmalsiB736
Lsi07G004300	Cucurbita moschata (Rifu)	cmolsiB174
Lsi07G004300	Cucurbita moschata (Rifu)	cmolsiB436
Lsi07G004300	Cucurbita moschata (Rifu)	cmolsiB437
Lsi07G004300	Cucurbita moschata (Rifu)	cmolsiB727
Lsi07G004300	Cucurbita pepo (Zucchini)	cpelsiB472
Lsi07G004300	Cucurbita pepo (Zucchini)	cpelsiB476
Lsi07G004300	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G004300	Wild cucumber (PI 183967)	cpilsiB137
Lsi07G004300	Wild cucumber (PI 183967)	cpilsiB546
Lsi07G004300	Cucumber (Chinese Long) v2	culsiB138
Lsi07G004300	Melon (DHL92) v3.5.1	lsimeB430
Lsi07G004300	Watermelon (Charleston Gray)	lsiwcgB387
Lsi07G004300	Watermelon (Charleston Gray)	lsiwcgB392
Lsi07G004300	Cucumber (Gy14) v2	cgyblsiB502
Lsi07G004300	Melon (DHL92) v3.6.1	lsimedB451