Lsi07G004170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G004170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSignal recognition particle 54 kDa protein 2
Locationchr07 : 4461463 .. 4461932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAGTCGCGAATGATGCGAATAGCAAGAGGTTCAGGTCGCCGTGTTCAGGAAGTAATGGAAATGATGGAAGAGTACAAGCGTCTCGCTAAGGTATGGAGCAAGATGAAAGGGCTGAAGATCCCAAAGAAGGGTGAAATGAGCGCGCTATCTCGAAATATGAACGCACAGCACATGAGTAAGGTCCTTCCTCCCCAGATTTTGAAGCAAATTGGCGGGATGGGTGGCCTACAGAGCTTGATGAAGCAAATGGGTTCAAATAAAGATATGATGGGAATGTTTGGAGGTGGAGACAAATAGATCTTTTATTCGATGTTCGGTTCGAGTTCTCTTATTCCGACAATTGGATCGTCTTGCAGAATGTGTGCCAATACTGATCTTCTCCAGGGAAGAGGACTGATGACGTCGACGATTTCACTGGATTGATTAAGCCATCGGACGAATATGTATATTTATTTGTTCTCTAG

mRNA sequence

ATGAACGAGTCGCGAATGATGCGAATAGCAAGAGGTTCAGGTCGCCGTGTTCAGGAAGTAATGGAAATGATGGAAGAGTACAAGCGTCTCGCTAAGGTATGGAGCAAGATGAAAGGGCTGAAGATCCCAAAGAAGGGTGAAATGAGCGCGCTATCTCGAAATATGAACGCACAGCACATGAGTAAGGTCCTTCCTCCCCAGATTTTGAAGCAAATTGGCGGGATGGGTGGCCTACAGAGCTTGATGAAGCAAATGGGTTCAAATAAAGATATGATGGGAATGTTTGGAGGGAAGAGGACTGATGACGTCGACGATTTCACTGGATTGATTAAGCCATCGGACGAATATGTATATTTATTTGTTCTCTAG

Coding sequence (CDS)

ATGAACGAGTCGCGAATGATGCGAATAGCAAGAGGTTCAGGTCGCCGTGTTCAGGAAGTAATGGAAATGATGGAAGAGTACAAGCGTCTCGCTAAGGTATGGAGCAAGATGAAAGGGCTGAAGATCCCAAAGAAGGGTGAAATGAGCGCGCTATCTCGAAATATGAACGCACAGCACATGAGTAAGGTCCTTCCTCCCCAGATTTTGAAGCAAATTGGCGGGATGGGTGGCCTACAGAGCTTGATGAAGCAAATGGGTTCAAATAAAGATATGATGGGAATGTTTGGAGGGAAGAGGACTGATGACGTCGACGATTTCACTGGATTGATTAAGCCATCGGACGAATATGTATATTTATTTGTTCTCTAG

Protein sequence

MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGKRTDDVDDFTGLIKPSDEYVYLFVL
Homology
[Close]
BLAST of Lsi07G004170 vs. Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-43
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 1 

Query: 2   NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMS 61
           NESRMMRIARGSGR+V+EVMEM+EEYKRLAK+WSKMKGLKIPK G+MSALSRNMNAQHMS
Sbjct: 397 NESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMS 456

Query: 62  KVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           KVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Sbjct: 457 KVLPPQMLKQIGGMGGLQSLMKQMGSGKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-40
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           M +SR+MRIARGSGR+V EVM+MMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 MTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMG  GG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGGMGG 492

[Close]
BLAST of Lsi07G004170 vs. Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-39
Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           + ESR+MRIARGSGR V EVMEM+EEYKRLAK++SKMKGLKIPKKG+MS+LSRNMNAQ+M
Sbjct: 396 LTESRIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=3 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 5.2e-33
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 2   NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMS 61
           NESR+MRIARGSGR V+EVMEM+EEYKRL  +W K+KGLK  +KG MSALS+N N+Q +S
Sbjct: 399 NESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLS 458

Query: 62  KVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK 99
           KVLP Q+LKQIGGM GLQSLMKQMGS KD+MGMFGG+
Sbjct: 459 KVLPAQMLKQIGGMSGLQSLMKQMGSGKDLMGMFGGR 495

[Close]
BLAST of Lsi07G004170 vs. Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-31
Identity = 68/97 (70.10%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           M ESR++RIARGSGR++++V +M+EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M
Sbjct: 396 MTESRIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           +K LPPQ+LKQ+GGMGGLQ+LMKQMG  KDM  M GG
Sbjct: 456 TKALPPQVLKQMGGMGGLQALMKQMG-GKDMSKMLGG 491

[Close]
BLAST of Lsi07G004170 vs. TrEMBL
Match: A0A0A0KYL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006430 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-43
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           +NESRMMRIARGSG RVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 INESRMMRIARGSGHRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Sbjct: 456 SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. TrEMBL
Match: A0A0D2RIV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G084700 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.2e-42
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR ++EVMEMMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 311 MNESRMMRIARGSGRHIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 370

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Sbjct: 371 SKVLPPQMLKQIGGMGGLQNLMKQMGSTKDMMGMFGG 407

[Close]
BLAST of Lsi07G004170 vs. TrEMBL
Match: A0A0D2UQY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G084700 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.2e-42
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR ++EVMEMMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 MNESRMMRIARGSGRHIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQNLMKQMGSTKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. TrEMBL
Match: A0A0S3T0A0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G225500 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-41
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR V+EVMEM+EEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 MNESRMMRIARGSGRPVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. TrEMBL
Match: A0A0B2NWB2_GLYSO (Signal recognition particle 54 kDa protein 2 OS=Glycine soja GN=glysoja_009526 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-41
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR V+EVMEM+EEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 MNESRMMRIARGSGRPVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. TAIR10
Match: AT1G48900.1 (AT1G48900.1 Signal recognition particle, SRP54 subunit protein)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-44
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 1 

Query: 2   NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMS 61
           NESRMMRIARGSGR+V+EVMEM+EEYKRLAK+WSKMKGLKIPK G+MSALSRNMNAQHMS
Sbjct: 397 NESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMS 456

Query: 62  KVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           KVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Sbjct: 457 KVLPPQMLKQIGGMGGLQSLMKQMGSGKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. TAIR10
Match: AT5G49500.1 (AT5G49500.1 Signal recognition particle, SRP54 subunit protein)

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-34
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 2   NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMS 61
           NESR+MRIARGSGR V+EVMEM+EEYKRL  +W K+KGLK  +KG MSALS+N N+Q +S
Sbjct: 399 NESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLS 458

Query: 62  KVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK 99
           KVLP Q+LKQIGGM GLQSLMKQMGS KD+MGMFGG+
Sbjct: 459 KVLPAQMLKQIGGMSGLQSLMKQMGSGKDLMGMFGGR 495

[Close]
BLAST of Lsi07G004170 vs. TAIR10
Match: AT1G15310.1 (AT1G15310.1 signal recognition particle 54 kDa subunit)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-27
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 1 

Query: 2   NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMS 61
           NESR+MRIARGSGR V+EVMEM+EEYKR+AK    MKG+KIPK G+MS            
Sbjct: 396 NESRIMRIARGSGRLVREVMEMLEEYKRIAKT---MKGIKIPKNGDMS------------ 455

Query: 62  KVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           KV+PPQ+LKQ+GGM GLQSLMKQMGS KDMMGMFGG
Sbjct: 456 KVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGG 476

[Close]
BLAST of Lsi07G004170 vs. NCBI nr
Match: gi|659108399|ref|XP_008454178.1| (PREDICTED: signal recognition particle 54 kDa protein 2 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           +NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 INESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Sbjct: 456 SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. NCBI nr
Match: gi|449468938|ref|XP_004152178.1| (PREDICTED: signal recognition particle 54 kDa protein 2 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.5e-43
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           +NESRMMRIARGSG RVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 INESRMMRIARGSGHRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Sbjct: 456 SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. NCBI nr
Match: gi|502147886|ref|XP_004506954.1| (PREDICTED: signal recognition particle 54 kDa protein 2 [Cicer arietinum])

HSP 1 Score: 178.3 bits (451), Expect = 8.0e-42
Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR+V+EVMEMMEEYKRLAK+WSKMKGLKIPKKG+MSALSRNMNAQHM
Sbjct: 396 MNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SK+LPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Sbjct: 456 SKILPPQMLKQIGGMGGLQSLMKQMGSTKDMMGMFGG 492

[Close]
BLAST of Lsi07G004170 vs. NCBI nr
Match: gi|763803699|gb|KJB70637.1| (hypothetical protein B456_011G084700 [Gossypium raimondii])

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR ++EVMEMMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 311 MNESRMMRIARGSGRHIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 370

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Sbjct: 371 SKVLPPQMLKQIGGMGGLQNLMKQMGSTKDMMGMFGG 407

[Close]
BLAST of Lsi07G004170 vs. NCBI nr
Match: gi|823246256|ref|XP_012455795.1| (PREDICTED: signal recognition particle 54 kDa protein 2 [Gossypium raimondii])

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1   MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHM 60
           MNESRMMRIARGSGR ++EVMEMMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHM
Sbjct: 396 MNESRMMRIARGSGRHIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHM 455

Query: 61  SKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG 98
           SKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Sbjct: 456 SKVLPPQMLKQIGGMGGLQNLMKQMGSTKDMMGMFGG 492

The following BLAST results are available for this feature:
BLAST of Lsi07G004170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SR543_ARATH9.4e-4391.67Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C ... [more]
SR542_SOLLC2.6e-4087.63Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1[more]
SR541_SOLLC6.3e-3985.57Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1[more]
SR542_ARATH5.2e-3375.26Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B ... [more]
SR541_HORVU6.3e-3170.10Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 ... [more]
BLAST of Lsi07G004170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYL0_CUCSA1.7e-4397.94Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006430 PE=3 SV=1[more]
A0A0D2RIV4_GOSRA7.2e-4292.78Uncharacterized protein OS=Gossypium raimondii GN=B456_011G084700 PE=4 SV=1[more]
A0A0D2UQY3_GOSRA7.2e-4292.78Uncharacterized protein OS=Gossypium raimondii GN=B456_011G084700 PE=3 SV=1[more]
A0A0S3T0A0_PHAAN1.6e-4193.81Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G225500 PE=... [more]
A0A0B2NWB2_GLYSO1.6e-4193.81Signal recognition particle 54 kDa protein 2 OS=Glycine soja GN=glysoja_009526 P... [more]
BLAST of Lsi07G004170 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48900.15.3e-4491.67 Signal recognition particle, SRP54 subunit protein[more]
AT5G49500.12.9e-3475.26 Signal recognition particle, SRP54 subunit protein[more]
AT1G15310.12.0e-2769.79 signal recognition particle 54 kDa subunit[more]
BLAST of Lsi07G004170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108399|ref|XP_008454178.1|6.5e-4498.97PREDICTED: signal recognition particle 54 kDa protein 2 [Cucumis melo][more]
gi|449468938|ref|XP_004152178.1|2.5e-4397.94PREDICTED: signal recognition particle 54 kDa protein 2 [Cucumis sativus][more]
gi|502147886|ref|XP_004506954.1|8.0e-4292.78PREDICTED: signal recognition particle 54 kDa protein 2 [Cicer arietinum][more]
gi|763803699|gb|KJB70637.1|1.0e-4192.78hypothetical protein B456_011G084700 [Gossypium raimondii][more]
gi|823246256|ref|XP_012455795.1|1.0e-4192.78PREDICTED: signal recognition particle 54 kDa protein 2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G004170.1Lsi07G004170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainGENE3DG3DSA:1.10.260.30coord: 1..37
score: 1.
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 2..33
score: 2.
IPR004125Signal recognition particle, SRP54 subunit, M-domainunknownSSF47446Signal peptide-binding domaincoord: 2..38
score: 1.4
NoneNo IPR availablePANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 1..41
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G004170Silver-seed gourdcarlsiB109
Lsi07G004170Silver-seed gourdcarlsiB182
Lsi07G004170Silver-seed gourdcarlsiB183
Lsi07G004170Cucumber (Chinese Long) v3cuclsiB331
Lsi07G004170Cucumber (Chinese Long) v3cuclsiB568
Lsi07G004170Watermelon (97103) v2lsiwmbB405
Lsi07G004170Watermelon (97103) v2lsiwmbB420
Lsi07G004170Wax gourdlsiwgoB558
Lsi07G004170Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi07G004170Cucumber (Gy14) v1cgylsiB113
Lsi07G004170Cucumber (Gy14) v1cgylsiB136
Lsi07G004170Cucurbita maxima (Rimu)cmalsiB256
Lsi07G004170Cucurbita maxima (Rimu)cmalsiB449
Lsi07G004170Cucurbita maxima (Rimu)cmalsiB450
Lsi07G004170Cucurbita moschata (Rifu)cmolsiB244
Lsi07G004170Cucurbita moschata (Rifu)cmolsiB436
Lsi07G004170Cucurbita moschata (Rifu)cmolsiB437
Lsi07G004170Cucurbita pepo (Zucchini)cpelsiB472
Lsi07G004170Cucurbita pepo (Zucchini)cpelsiB476
Lsi07G004170Cucurbita pepo (Zucchini)cpelsiB515
Lsi07G004170Cucurbita pepo (Zucchini)cpelsiB516
Lsi07G004170Wild cucumber (PI 183967)cpilsiB311
Lsi07G004170Wild cucumber (PI 183967)cpilsiB546
Lsi07G004170Cucumber (Chinese Long) v2culsiB312
Lsi07G004170Melon (DHL92) v3.5.1lsimeB430
Lsi07G004170Melon (DHL92) v3.5.1lsimeB447
Lsi07G004170Watermelon (Charleston Gray)lsiwcgB387
Lsi07G004170Watermelon (Charleston Gray)lsiwcgB406
Lsi07G004170Watermelon (97103) v1lsiwmB438
Lsi07G004170Cucumber (Gy14) v2cgyblsiB285
Lsi07G004170Cucumber (Gy14) v2cgyblsiB502
Lsi07G004170Melon (DHL92) v3.6.1lsimedB451
Lsi07G004170Melon (DHL92) v3.6.1lsimedB465