Lsi07G004060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G004060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_2
Location	chr07 : 4375169 .. 4375585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTGTAAAGTCTCAAACTGTCAAACAAAACAGCAAATCGTTGGACCAAAAAATCAGAGCGCGAATGGCGGACGACGACGATCCATGGTTAGCTCCCGACAAGCTCTACCATTTTCTTCTCTGTTTCACTCTCACTATCCTCTTCGCTTCATTGGCCCTTCACACGCGTTATCCATTCATCCGTCGCCACTCCATTCTGATCGGATCCGTCGTTTCTCTTTTCGCCGGAGCCGCTAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCTTCTACCAGGGATGCTGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGCAGCTGCGGCGACAAAGAAGCTAAACCTAATCGGGACATTTTAATGGTCTGA

mRNA sequence

ATGAATGTTGTAAAGTCTCAAACTGTCAAACAAAACAGCAAATCGTTGGACCAAAAAATCAGAGCGCGAATGGCGGACGACGACGATCCATGGTTAGCTCCCGACAAGCTCTACCATTTTCTTCTCTGTTTCACTCTCACTATCCTCTTCGCTTCATTGGCCCTTCACACGCGTTATCCATTCATCCGTCGCCACTCCATTCTGATCGGATCCGTCGTTTCTCTTTTCGCCGGAGCCGCTAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCTTCTACCAGGGATGCTGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGCAGCTGCGGCGACAAAGAAGCTAAACCTAATCGGGACATTTTAATGGTCTGA

Coding sequence (CDS)

ATGAATGTTGTAAAGTCTCAAACTGTCAAACAAAACAGCAAATCGTTGGACCAAAAAATCAGAGCGCGAATGGCGGACGACGACGATCCATGGTTAGCTCCCGACAAGCTCTACCATTTTCTTCTCTGTTTCACTCTCACTATCCTCTTCGCTTCATTGGCCCTTCACACGCGTTATCCATTCATCCGTCGCCACTCCATTCTGATCGGATCCGTCGTTTCTCTTTTCGCCGGAGCCGCTAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCTTCTACCAGGGATGCTGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGCAGCTGCGGCGACAAAGAAGCTAAACCTAATCGGGACATTTTAATGGTCTGA

Protein sequence

MNVVKSQTVKQNSKSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGDKEAKPNRDILMV

Homology

[Close]

BLAST of Lsi07G004060 vs. TrEMBL
Match: A0A0A0KYM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007020 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.1e-49
Identity = 105/118 (88.98%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 24  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEV 83
           M +DDDPWLAPDK YHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SLFAGAAKEV
Sbjct: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60

Query: 84  ADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS---CGDKEAKPNRDILMV 139
           ADELGFFKSAGASTRDAVAD IGVLIASFLLHALRFSIRS    G KEA PNRDILMV
Sbjct: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 118

[Close]

BLAST of Lsi07G004060 vs. TrEMBL
Match: U5GVQ6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14840g PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           +++DPWLAPDKLYH L C +LT+LF+ LA  TRYPF++RHSI +G+++SLFAGAAKE AD
Sbjct: 27  NNEDPWLAPDKLYHVLFCLSLTLLFSKLASLTRYPFLKRHSIRVGAILSLFAGAAKEAAD 86

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGDKEAKPNRDILMV 139
           ++G F SAGAS +DAVAD+IGVLIA+  L  L+       D  +   R +L +
Sbjct: 87  QIGLFPSAGASAKDAVADIIGVLIAAAALSMLKSKNYDGSDSGSGQTRRVLPI 139

[Close]

BLAST of Lsi07G004060 vs. TrEMBL
Match: A0A061GA39_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027411 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 1


Query: 17  DQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLF 76
           D+   +   DD DPWLAPDKLYHFL CF LT LF++LA  +RY F+R HSI +GS++SL 
Sbjct: 3   DESSTSNNDDDKDPWLAPDKLYHFLFCFFLTFLFSTLASLSRYSFLRNHSIRVGSILSLA 62

Query: 77  AGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGD 127
           AGAAKE AD+LG F SAGAS+RDAVADL+GVL+A+ +L   +  +R   D
Sbjct: 63  AGAAKEAADQLGLFPSAGASSRDAVADLLGVLVAAMVLSLRKRLLRFGSD 112

[Close]

BLAST of Lsi07G004060 vs. TrEMBL
Match: A0A0V0HZR2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-26
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           ++ D W+APDKLYH L CF + I+F  LA  TRYPFIRR SI +GS++SL AGAAKEVAD
Sbjct: 2   EEGDDWIAPDKLYHILFCFFIAIIFTLLAEKTRYPFIRRRSIWVGSIISLAAGAAKEVAD 61

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGDKEAKPNRDI 136
           ELGFF+SAGAST+DAVAD+ G LIA     AL FS+        +P++ I
Sbjct: 62  ELGFFRSAGASTKDAVADVFGTLIA-----ALAFSLYKSSFIRRRPDQTI 106

[Close]

BLAST of Lsi07G004060 vs. TrEMBL
Match: A0A067L0J1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27004 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-26
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           +D+DPWLAPDKLYH + C  LT  F+ LA  TRYPF+RRHS+LIGS++SL AGAAKE AD
Sbjct: 6   EDEDPWLAPDKLYHLIFCLFLTFFFSKLASLTRYPFLRRHSVLIGSIISLSAGAAKEAAD 65

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLL 115
            LG F SAGAS +DA ADL+GVLIA+  L
Sbjct: 66  HLGLFPSAGASAKDAAADLLGVLIAALAL 94

[Close]

BLAST of Lsi07G004060 vs. TAIR10
Match: AT1G15900.1 (AT1G15900.1 unknown protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           D +DPWLA DKLYH + CF+++++F++LA  +RY F+RRHSI IGS  SL AGAAKE AD
Sbjct: 9   DGEDPWLARDKLYHVIFCFSISLIFSTLASFSRYSFLRRHSIWIGSAFSLAAGAAKEAAD 68

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLL 115
           ++G F SAGAS RDAVAD IGV+IA+ +L
Sbjct: 69  QIGIFPSAGASVRDAVADAIGVVIAALVL 97

[Close]

BLAST of Lsi07G004060 vs. NCBI nr
Match: gi|659108374|ref|XP_008454165.1| (PREDICTED: uncharacterized protein LOC103494650 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.6e-51
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 18  QKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFA 77
           +KI A M +DDDPWLAPDKLYHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SL A
Sbjct: 39  KKIGAGMEEDDDPWLAPDKLYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLCA 98

Query: 78  GAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSC-GDKEAKPNRDIL 137
           GAAKEVADELGFFKSAGASTRDAVADLIGVL+ASFLLHALRFSIRS  GDKEA PNRDIL
Sbjct: 99  GAAKEVADELGFFKSAGASTRDAVADLIGVLLASFLLHALRFSIRSSGGDKEACPNRDIL 158

Query: 138 MV 139
           MV
Sbjct: 159 MV 160

[Close]

BLAST of Lsi07G004060 vs. NCBI nr
Match: gi|778689694|ref|XP_011653000.1| (PREDICTED: uncharacterized protein LOC105435165 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 105/118 (88.98%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 24  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEV 83
           M +DDDPWLAPDK YHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SLFAGAAKEV
Sbjct: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60

Query: 84  ADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS---CGDKEAKPNRDILMV 139
           ADELGFFKSAGASTRDAVAD IGVLIASFLLHALRFSIRS    G KEA PNRDILMV
Sbjct: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 118

[Close]

BLAST of Lsi07G004060 vs. NCBI nr
Match: gi|645245219|ref|XP_008228778.1| (PREDICTED: uncharacterized protein LOC103328163 [Prunus mume])

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-30
Identity = 63/97 (64.95%), Postives = 83/97 (85.57%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           DD+DPWLAPDKL+H L CF+ T+LF++LA  TRYPF+RRHSI +GS++SL AGAAKE AD
Sbjct: 2   DDNDPWLAPDKLHHVLFCFSFTLLFSTLAARTRYPFLRRHSIRVGSILSLLAGAAKEFAD 61

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIR 123
           ELGFF+SAGAS +DA AD++GVLI S +L+ ++++ R
Sbjct: 62  ELGFFRSAGASAKDAAADILGVLIGSIVLYLIKYTTR 98

[Close]

BLAST of Lsi07G004060 vs. NCBI nr
Match: gi|1009113145|ref|XP_015871935.1| (PREDICTED: uncharacterized protein LOC107409011 [Ziziphus jujuba])

HSP 1 Score: 136.0 bits (341), Expect = 5.1e-29
Identity = 65/112 (58.04%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 27  DDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADE 86
           D+DPWLAPDKLYH L CF+L +LF+++A  T +PF+RRH I++GS+ SL AGAAKE+ADE
Sbjct: 18  DEDPWLAPDKLYHVLFCFSLNLLFSTVAALTPHPFLRRHYIVVGSIASLLAGAAKEIADE 77

Query: 87  LGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGDKEAKPNRDILMV 139
           LG+F+SAGAS +DAVADL+GV++AS++L  ++ S R   D +A   R + MV
Sbjct: 78  LGYFRSAGASAKDAVADLLGVVLASYVLSLVKLSPRQ-RDHDADQPRGLSMV 128

[Close]

BLAST of Lsi07G004060 vs. NCBI nr
Match: gi|470134854|ref|XP_004303251.1| (PREDICTED: uncharacterized protein LOC101304109 [Fragaria vesca subsp. vesca])

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 26  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVAD 85
           +D+D WLA DKLYHFL CF+LT+ F++    T YPF+RRHSI +GS++SL AGAAKE AD
Sbjct: 2   EDNDSWLARDKLYHFLFCFSLTLFFSTFVARTPYPFLRRHSIRVGSLLSLLAGAAKEFAD 61

Query: 86  ELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRSCGDKEAKPNRDILMV 139
           ELGFF SAGAS +DAVA+ IGV++AS LL  +R+  RS  D EA   +++ MV
Sbjct: 62  ELGFFHSAGASAKDAVANFIGVVVASLLLSLVRYLARS--DNEAGRIKELNMV 112

The following BLAST results are available for this feature:

BLAST of Lsi07G004060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G004060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYM1_CUCSA	4.1e-49	88.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007020 PE=4 SV=1	[more]
U5GVQ6_POPTR	1.5e-27	55.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14840g PE=4 SV=1	[more]
A0A061GA39_THECC	2.0e-27	59.09	Uncharacterized protein OS=Theobroma cacao GN=TCM_027411 PE=4 SV=1	[more]
A0A0V0HZR2_SOLCH	2.8e-26	59.09	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
A0A067L0J1_JATCU	3.7e-26	67.42	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27004 PE=4 SV=1	[more]

BLAST of Lsi07G004060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15900.1	1.1e-26	62.92	unknown protein	[more]

BLAST of Lsi07G004060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108374\|ref\|XP_008454165.1\|	3.6e-51	89.34	PREDICTED: uncharacterized protein LOC103494650 [Cucumis melo]	[more]
gi\|778689694\|ref\|XP_011653000.1\|	5.8e-49	88.98	PREDICTED: uncharacterized protein LOC105435165 [Cucumis sativus]	[more]
gi\|645245219\|ref\|XP_008228778.1\|	4.6e-30	64.95	PREDICTED: uncharacterized protein LOC103328163 [Prunus mume]	[more]
gi\|1009113145\|ref\|XP_015871935.1\|	5.1e-29	58.04	PREDICTED: uncharacterized protein LOC107409011 [Ziziphus jujuba]	[more]
gi\|470134854\|ref\|XP_004303251.1\|	3.3e-28	59.29	PREDICTED: uncharacterized protein LOC101304109 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004060.1	Lsi07G004060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35462	FAMILY NOT NAMED	coord: 10..118 score: 1.5
None	No IPR available	PANTHER	PTHR35462:SF2	SUBFAMILY NOT NAMED	coord: 10..118 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G004060	Csa4G007020	Cucumber (Chinese Long) v2	culsiB312
Lsi07G004060	CSPI04G02090	Wild cucumber (PI 183967)	cpilsiB311
Lsi07G004060	Cucsa.095910	Cucumber (Gy14) v1	cgylsiB113
Lsi07G004060	CmaCh01G001780	Cucurbita maxima (Rimu)	cmalsiB450
Lsi07G004060	CmoCh01G001860	Cucurbita moschata (Rifu)	cmolsiB437
Lsi07G004060	Cla012756	Watermelon (97103) v1	lsiwmB438
Lsi07G004060	MELO3C017832	Melon (DHL92) v3.5.1	lsimeB447
Lsi07G004060	ClCG07G012110	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G004060	MELO3C017832.2	Melon (DHL92) v3.6.1	lsimedB465
Lsi07G004060	Cla97C07G138850	Watermelon (97103) v2	lsiwmbB405
Lsi07G004060	Bhi01G002822	Wax gourd	lsiwgoB558
Lsi07G004060	Cp4.1LG02g15170	Cucurbita pepo (Zucchini)	cpelsiB472
Lsi07G004060	CsGy4G002030	Cucumber (Gy14) v2	cgyblsiB285
Lsi07G004060	CsaV3_4G002040	Cucumber (Chinese Long) v3	cuclsiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G004060	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G004060	Cucurbita maxima (Rimu)	cmalsiB773
Lsi07G004060	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G004060	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G004060	Silver-seed gourd	carlsiB109
Lsi07G004060	Silver-seed gourd	carlsiB182