Lsi07G003830 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G003830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Phenylalanine ammonia-lyase
Location	chr07 : 4111093 .. 4111524 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCGAAAGGTTTTTGCTCATCAAAATGGTTCAATGGGGAGCTTGTGCAACACCCTTCAAGATCCACTCAACTGGGGTATGGCAGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAGCGAATGGTCGAAGAGTATCGGATGCCTTCGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCTACTCGTGACAACGATGTCATCGTAGAATTGGCTGAGTCTGCGAGGGCTGGTGTCAAAGCTAGCAGCGACTGGGTCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTAGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGGAGCGGTGCTGAGTAG

mRNA sequence

ATGCCCCGAAAGGTTTTTGCTCATCAAAATGGTTCAATGGGGAGCTTGTGCAACACCCTTCAAGATCCACTCAACTGGGGTATGGCAGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAGCGAATGGTCGAAGAGTATCGGATGCCTTCGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCTACTCGTGACAACGATGTCATCGTAGAATTGGCTGAGTCTGCGAGGGCTGGTGTCAAAGCTAGCAGCGACTGGGTCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTAGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGGAGCGGTGCTGAGTAG

Coding sequence (CDS)

ATGCCCCGAAAGGTTTTTGCTCATCAAAATGGTTCAATGGGGAGCTTGTGCAACACCCTTCAAGATCCACTCAACTGGGGTATGGCAGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAGCGAATGGTCGAAGAGTATCGGATGCCTTCGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCTACTCGTGACAACGATGTCATCGTAGAATTGGCTGAGTCTGCGAGGGCTGGTGTCAAAGCTAGCAGCGACTGGGTCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTAGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGGAGCGGTGCTGAGTAG

Protein sequence

MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFGSGAE

Homology

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BLAST of Lsi07G003830 vs. Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.0e-53
Identity = 106/137 (77.37%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 8   HQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAA 67
           +QNGS+ SLC   +DPL+WG+AAE+MKGSHLDEVKRMV +YR P VKLGG+TLTI+QVA+
Sbjct: 9   YQNGSLESLCVNQRDPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQVAS 68

Query: 68  IATRDN-DVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQ 127
           IA  D  DV VEL+ESAR GVKASSDWVM+SM KGTDSYGVTT FGATSHRRT QGGALQ
Sbjct: 69  IAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQ 128

Query: 128 KELIRFLNSGIFGSGAE 144
           KELIRFLN+GIFG+G E
Sbjct: 129 KELIRFLNAGIFGNGTE 145

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BLAST of Lsi07G003830 vs. Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 22  DPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVELAE 81
           DPLNWG+AAE+MKGSHLDEVKRMVEEYR P V+LGG+TLTISQVAAIA  D+ V VEL+E
Sbjct: 33  DPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSE 92

Query: 82  SARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFGSG 141
           SARAGVKASSDWVMESM+KGTDSYGVTT FGATSHRRT QGGALQKELIRFLN+GIFG+G
Sbjct: 93  SARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG 152

Query: 142 AE 144
            E
Sbjct: 153 TE 154

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BLAST of Lsi07G003830 vs. Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 107/134 (79.85%), Postives = 116/134 (86.57%), Query Frame = 1


Query: 10  NGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIA 69
           NGS G   N   DPLNWGMAAES+KGSHLDEVKRM+EEYR P VKLGG+TLTI QV AIA
Sbjct: 11  NGSPGFNTN---DPLNWGMAAESLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIA 70

Query: 70  TRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKEL 129
           +RD  V+VEL+E ARAGVKASSDWVM+SMSKGTDSYGVTT FGATSHRRT QGG LQKEL
Sbjct: 71  SRDVGVMVELSEEARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKEL 130

Query: 130 IRFLNSGIFGSGAE 144
           IRFLN+GIFG+G E
Sbjct: 131 IRFLNAGIFGNGTE 141

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BLAST of Lsi07G003830 vs. Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.8e-52
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 1


Query: 9   QNGSMGS--LCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVA 68
           +NG  G+   C    DPLNW  AAE +KGSHLDEVKRMVEE+R   VKLGG+TLTISQVA
Sbjct: 6   ENGHHGNNGFCVKQNDPLNWVAAAEELKGSHLDEVKRMVEEFRKTVVKLGGETLTISQVA 65

Query: 69  AIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQ 128
           AIA RDN+V V+LAES+RAGVKASSDWVMESM+KGTDSYGVTT FGATSHRRT QGGALQ
Sbjct: 66  AIAARDNEVAVQLAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQ 125

Query: 129 KELIRFLNSGIFGSGAE 144
           KELIRFLN+GIFG+G E
Sbjct: 126 KELIRFLNAGIFGNGTE 142

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BLAST of Lsi07G003830 vs. Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-52
Identity = 106/137 (77.37%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 8   HQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAA 67
           H NG+   LC   +DPLNWG+AAE++ GSHLDEVKRMV EYR P VKL G+TLTISQVAA
Sbjct: 11  HANGNGLDLCMKKEDPLNWGVAAEALTGSHLDEVKRMVAEYRKPVVKLEGETLTISQVAA 70

Query: 68  IATRDND-VIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQ 127
           I+ RD+  V VEL+E ARAGVKASSDWVM+SM+KGTDSYGVTT FGATSHRRT QGGALQ
Sbjct: 71  ISARDDSGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQ 130

Query: 128 KELIRFLNSGIFGSGAE 144
           KELIRFLN+GIFGSGAE
Sbjct: 131 KELIRFLNAGIFGSGAE 147

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BLAST of Lsi07G003830 vs. TrEMBL
Match: A0A0A0KTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008760 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGS+ +LCNT QDPLNWG+AAESMKGSHLDEVKRMVEEYR P VKLGG+TL
Sbjct: 1   MAQKVCANQNGSVETLCNTHQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. TrEMBL
Match: G8HZH6_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=PAL PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.9e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM SLC++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. TrEMBL
Match: A0A0A0KVS6_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008770 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.9e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM SLC++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. TrEMBL
Match: A0A0A0KTN3_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008780 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM S C++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESFCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. TrEMBL
Match: A0A0A0KH72_CUCSA (Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 6   FAHQNGSMGSLCNT-LQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQ 65
           FAHQNGSM S C + + DPLNWG+AAE++KGSHLDEVKRMV+EYR P VKLGG+TLTISQ
Sbjct: 9   FAHQNGSMESFCTSHVVDPLNWGVAAEALKGSHLDEVKRMVDEYRRPVVKLGGETLTISQ 68

Query: 66  VAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGA 125
           VAAIATRDNDV+V+LAESARAGVKASSDWVMESM+KGTDSYGVTT FGATSHRRT QGGA
Sbjct: 69  VAAIATRDNDVVVKLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGA 128

Query: 126 LQKELIRFLNSGIFGSGAE 144
           LQKELIRFLN+GIFG+GAE
Sbjct: 129 LQKELIRFLNAGIFGNGAE 147

[Close]

BLAST of Lsi07G003830 vs. TAIR10
Match: AT3G53260.1 (AT3G53260.1 phenylalanine ammonia-lyase 2)

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-49
Identity = 97/125 (77.60%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 19  TLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVE 78
           TL DPLNWG+AA+ MKGSHLDEVK+MVEEYR P V LGG+TLTI QVAAI+T    V VE
Sbjct: 23  TLADPLNWGLAADQMKGSHLDEVKKMVEEYRRPVVNLGGETLTIGQVAAISTVGGSVKVE 82

Query: 79  LAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIF 138
           LAE++RAGVKASSDWVMESM+KGTDSYGVTT FGATSHRRT  G ALQ ELIRFLN+GIF
Sbjct: 83  LAETSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIF 142

Query: 139 GSGAE 144
           G+  E
Sbjct: 143 GNTKE 147

[Close]

BLAST of Lsi07G003830 vs. TAIR10
Match: AT2G37040.1 (AT2G37040.1 PHE ammonia lyase 1)

HSP 1 Score: 188.3 bits (477), Expect = 3.2e-48
Identity = 97/123 (78.86%), Postives = 105/123 (85.37%), Query Frame = 1


Query: 21  QDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVELA 80
           +DPLNWG AAE MKGSHLDEVKRMV E+R P V LGG+TLTI QVAAI+T  N V VEL+
Sbjct: 33  EDPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELS 92

Query: 81  ESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFGS 140
           E+ARAGV ASSDWVMESM+KGTDSYGVTT FGATSHRRT  G ALQKELIRFLN+GIFGS
Sbjct: 93  ETARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGS 152

Query: 141 GAE 144
             E
Sbjct: 153 TKE 155

[Close]

BLAST of Lsi07G003830 vs. TAIR10
Match: AT3G10340.1 (AT3G10340.1 phenylalanine ammonia-lyase 4)

HSP 1 Score: 184.1 bits (466), Expect = 6.0e-47
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 1


Query: 22  DPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVELAE 81
           DPLNW   AE++KGSHLDEVKRMV+EYR  +VKLGG+TLTI QVAA+A       VELAE
Sbjct: 16  DPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAAVARGGGGSTVELAE 75

Query: 82  SARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFGSG 141
            ARAGVKASS+WVMESM++GTDSYGVTT FGATSHRRT QGGALQ ELIRFLN+GIFG G
Sbjct: 76  EARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPG 135

Query: 142 A 143
           A
Sbjct: 136 A 136

[Close]

BLAST of Lsi07G003830 vs. TAIR10
Match: AT5G04230.2 (AT5G04230.2 phenyl alanine ammonia-lyase 3)

HSP 1 Score: 165.2 bits (417), Expect = 2.9e-41
Identity = 82/124 (66.13%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 20  LQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVEL 79
           L DPLNW +AAE++KGSHL+EVK+MV++YR  +V+LGG+TLTI QVAA+A+      VEL
Sbjct: 11  LSDPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVAS--GGPTVEL 70

Query: 80  AESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFG 139
           +E AR GVKASSDWVMESM++ TD+YG+TT FG++S RRT+QG ALQKELIR+LN+GIF 
Sbjct: 71  SEEARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFA 130

Query: 140 SGAE 144
           +G E
Sbjct: 131 TGNE 132

[Close]

BLAST of Lsi07G003830 vs. NCBI nr
Match: gi|778697441|ref|XP_011654322.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.5e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGS+ +LCNT QDPLNWG+AAESMKGSHLDEVKRMVEEYR P VKLGG+TL
Sbjct: 1   MAQKVCANQNGSVETLCNTHQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. NCBI nr
Match: gi|700197815|gb|KGN52973.1| (hypothetical protein Csa_4G008760 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.5e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGS+ +LCNT QDPLNWG+AAESMKGSHLDEVKRMVEEYR P VKLGG+TL
Sbjct: 1   MAQKVCANQNGSVETLCNTHQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. NCBI nr
Match: gi|821595363|ref|NP_001295839.1| (phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.6e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM SLC++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. NCBI nr
Match: gi|778697444|ref|XP_004152155.2| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.6e-63
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM SLC++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

[Close]

BLAST of Lsi07G003830 vs. NCBI nr
Match: gi|778689757|ref|XP_011653013.1| (PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1


Query: 1   MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTL 60
           M +KV A+QNGSM S C++ QDPLNWG+AA+SMKGSHLDEVKRMVEEYR P VKLGGQTL
Sbjct: 1   MAQKVNANQNGSMESFCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTL 60

Query: 61  TISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTN 120
           TISQVAAIATRDNDV+VELAESARAGVKASSDWVMESM KGTDSYGVTT FGATSHRRTN
Sbjct: 61  TISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTN 120

Query: 121 QGGALQKELIRFLNSGIFGSGAE 144
           QGGALQKELIRFLNSGIFG+G+E
Sbjct: 121 QGGALQKELIRFLNSGIFGNGSE 143

The following BLAST results are available for this feature:

BLAST of Lsi07G003830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PALY_POPTR	9.0e-53	77.37	Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1	[more]
PAL1_PEA	2.0e-52	85.25	Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1	[more]
PAL2_POPKI	2.0e-52	79.85	Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1	[more]
PALY_DIGLA	5.8e-52	77.37	Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1	[more]
PAL3_PETCR	7.6e-52	77.37	Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1	[more]

BLAST of Lsi07G003830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTW0_CUCSA	1.8e-63	88.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008760 PE=4 SV=1	[more]
G8HZH6_CUCSA	3.9e-63	88.11	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=PAL PE=2 SV=1	[more]
A0A0A0KVS6_CUCSA	3.9e-63	88.11	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008770 PE=3 SV=1	[more]
A0A0A0KTN3_CUCSA	1.1e-62	87.41	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_4G008780 PE=3 SV=1	[more]
A0A0A0KH72_CUCSA	1.0e-58	84.89	Phenylalanine ammonia-lyase OS=Cucumis sativus GN=Csa_6G445770 PE=3 SV=1	[more]

BLAST of Lsi07G003830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53260.1	8.4e-49	77.60	phenylalanine ammonia-lyase 2	[more]
AT2G37040.1	3.2e-48	78.86	PHE ammonia lyase 1	[more]
AT3G10340.1	6.0e-47	76.86	phenylalanine ammonia-lyase 4	[more]
AT5G04230.2	2.9e-41	66.13	phenyl alanine ammonia-lyase 3	[more]

BLAST of Lsi07G003830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697441\|ref\|XP_011654322.1\|	2.5e-63	88.11	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|700197815\|gb\|KGN52973.1\|	2.5e-63	88.11	hypothetical protein Csa_4G008760 [Cucumis sativus]	[more]
gi\|821595363\|ref\|NP_001295839.1\|	5.6e-63	88.11	phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|778697444\|ref\|XP_004152155.2\|	5.6e-63	88.11	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]
gi\|778689757\|ref\|XP_011653013.1\|	1.6e-62	87.41	PREDICTED: phenylalanine ammonia-lyase-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR024083	Fumarase/histidase_N
IPR008948	L-Aspartase-like
IPR001106	Aromatic_Lyase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009821	alkaloid biosynthetic process
biological_process	GO:0009800	cinnamic acid biosynthetic process
biological_process	GO:0006559	L-phenylalanine catabolic process
biological_process	GO:0006570	tyrosine metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0045548	phenylalanine ammonia-lyase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G003830.1	Lsi07G003830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001106	Aromatic amino acid lyase	PFAM	PF00221	Lyase_aromatic	coord: 60..137 score: 7.7
IPR008948	L-Aspartase-like	unknown	SSF48557	L-aspartase-like	coord: 22..139 score: 2.43
IPR024083	Fumarase/histidase, N-terminal	GENE3D	G3DSA:1.10.275.10		coord: 21..141 score: 4.6
None	No IPR available	PANTHER	PTHR10362	HISTIDINE AMMONIA-LYASE	coord: 1..141 score: 1.4
None	No IPR available	PANTHER	PTHR10362:SF17	SUBFAMILY NOT NAMED	coord: 1..141 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G003830	CSPI04G02380	Wild cucumber (PI 183967)	cpilsiB311
Lsi07G003830	Cla97C07G138620	Watermelon (97103) v2	lsiwmbB405
Lsi07G003830	Bhi01G002912	Wax gourd	lsiwgoB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G003830	Cucumber (Gy14) v1	cgylsiB113
Lsi07G003830	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G003830	Cucurbita maxima (Rimu)	cmalsiB773
Lsi07G003830	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G003830	Cucurbita moschata (Rifu)	cmolsiB764
Lsi07G003830	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G003830	Cucurbita pepo (Zucchini)	cpelsiB726
Lsi07G003830	Cucumber (Chinese Long) v2	culsiB312
Lsi07G003830	Melon (DHL92) v3.5.1	lsimeB447
Lsi07G003830	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G003830	Watermelon (97103) v1	lsiwmB438
Lsi07G003830	Cucumber (Gy14) v2	cgyblsiB285
Lsi07G003830	Melon (DHL92) v3.6.1	lsimedB465
Lsi07G003830	Silver-seed gourd	carlsiB109
Lsi07G003830	Silver-seed gourd	carlsiB635
Lsi07G003830	Cucumber (Chinese Long) v3	cuclsiB331