Lsi07G003600 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G003600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RAB GTPase activator protein
Location	chr07 : 3841954 .. 3842139 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

mRNA sequence

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

Coding sequence (CDS)

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

Protein sequence

MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRRSSTMCMHVTERF

Homology

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BLAST of Lsi07G003600 vs. TrEMBL
Match: A0A0A0KVX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010930 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

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BLAST of Lsi07G003600 vs. TrEMBL
Match: A0A067L611_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20916 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCG E +KQW+C KAG  SLQRVG IVR+IGEPCLSQSPIKVVI V R
Sbjct: 1  MSCG-EEEKQWSCPKAGTVSLQRVGSIVREIGEPCLSQSPIKVVIAVSR 48

[Close]

BLAST of Lsi07G003600 vs. TrEMBL
Match: I1MD42_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G028000 PE=4 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 5  GEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          GE +KQWTC KAGAA+L++V  IVRDIG+PCLSQSP+KVV+TV R
Sbjct: 4  GEEEKQWTCGKAGAANLRKVSSIVRDIGDPCLSQSPVKVVVTVNR 48

[Close]

BLAST of Lsi07G003600 vs. TrEMBL
Match: A0A0B2RJA5_GLYSO (TBC1 domain family member 15 OS=Glycine soja GN=glysoja_005327 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 5  GEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          GE +KQWTC KAGAA+L++V  IVRDIG+PCLSQSP+KVV+TV R
Sbjct: 4  GEEEKQWTCGKAGAANLRKVSSIVRDIGDPCLSQSPVKVVVTVNR 48

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BLAST of Lsi07G003600 vs. TrEMBL
Match: B9T757_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0414400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKV 44
          MSCGG  +KQW+C K GA +LQRVG IVRDIGEPCL+QSPIKV
Sbjct: 1  MSCGGGEEKQWSCGKPGAVNLQRVGSIVRDIGEPCLAQSPIKV 43

[Close]

BLAST of Lsi07G003600 vs. TAIR10
Match: AT2G43490.1 (AT2G43490.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

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BLAST of Lsi07G003600 vs. TAIR10
Match: AT3G59570.1 (AT3G59570.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          M   GE  K+WT  KAG  SLQ+V  +VRD+ EPCLSQS I+VV+T+
Sbjct: 1  MFSAGEG-KKWTRRKAGLVSLQKVASLVRDLREPCLSQSRIQVVLTI 46

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BLAST of Lsi07G003600 vs. NCBI nr
Match: gi|449468872|ref|XP_004152145.1| (PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: gi|778689835|ref|XP_011653026.1| (PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: gi|700197836|gb|KGN52994.1| (hypothetical protein Csa_4G010930 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: gi|659108262|ref|XP_008454103.1| (PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: gi|659108254|ref|XP_008454099.1| (PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

The following BLAST results are available for this feature:

BLAST of Lsi07G003600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G003600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVX5_CUCSA	2.4e-17	93.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G010930 PE=4 SV=1	[more]
A0A067L611_JATCU	1.5e-11	77.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20916 PE=4 SV=1	[more]
I1MD42_SOYBN	4.3e-11	73.33	Uncharacterized protein OS=Glycine max GN=GLYMA_15G028000 PE=4 SV=2	[more]
A0A0B2RJA5_GLYSO	4.3e-11	73.33	TBC1 domain family member 15 OS=Glycine soja GN=glysoja_005327 PE=4 SV=1	[more]
B9T757_RICCO	7.4e-11	76.74	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0414400 PE=4 SV=1	[more]

BLAST of Lsi07G003600 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43490.1	1.7e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT3G59570.1	1.5e-07	57.45	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

BLAST of Lsi07G003600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468872\|ref\|XP_004152145.1\|	3.4e-17	93.88	PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis sativus]	[more]
gi\|778689835\|ref\|XP_011653026.1\|	3.4e-17	93.88	PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis sativus]	[more]
gi\|700197836\|gb\|KGN52994.1\|	3.4e-17	93.88	hypothetical protein Csa_4G010930 [Cucumis sativus]	[more]
gi\|659108262\|ref\|XP_008454103.1\|	3.4e-17	93.88	PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis melo]	[more]
gi\|659108254\|ref\|XP_008454099.1\|	3.4e-17	93.88	PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090630	activation of GTPase activity
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0031338	regulation of vesicle fusion
biological_process	GO:0008150	biological_process
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0017137	Rab GTPase binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G003600.1	Lsi07G003600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G003600	Csa4G010930	Cucumber (Chinese Long) v2	culsiB312
Lsi07G003600	Cla012799	Watermelon (97103) v1	lsiwmB438
Lsi07G003600	MELO3C017792.2	Melon (DHL92) v3.6.1	lsimedB465
Lsi07G003600	Cla97C07G138400	Watermelon (97103) v2	lsiwmbB405
Lsi07G003600	Bhi01G002883	Wax gourd	lsiwgoB548
Lsi07G003600	CsGy4G002470	Cucumber (Gy14) v2	cgyblsiB285
Lsi07G003600	Carg15432	Silver-seed gourd	carlsiB635
Lsi07G003600	CsaV3_4G002540	Cucumber (Chinese Long) v3	cuclsiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G003600	Cucumber (Gy14) v1	cgylsiB113
Lsi07G003600	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G003600	Cucurbita maxima (Rimu)	cmalsiB773
Lsi07G003600	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G003600	Cucurbita moschata (Rifu)	cmolsiB764
Lsi07G003600	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G003600	Cucurbita pepo (Zucchini)	cpelsiB726
Lsi07G003600	Wild cucumber (PI 183967)	cpilsiB311
Lsi07G003600	Melon (DHL92) v3.5.1	lsimeB447
Lsi07G003600	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G003600	Silver-seed gourd	carlsiB109