Lsi07G003550 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi07G003550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNADH:ubiquinone oxidoreductase intermediate-associated protein 30
Locationchr07 : 3773946 .. 3775889 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGAAAGAAACCAAAGTTGCCGGCAATGGAGGGTTGGAGGGTTTTCAAGTTGCCGGCGTGGAGAGTCTTCAAATCGCTGGTGGTGGGTGGTCTTCAAGTCGTTGGCGTCTGATGAAGGAGGAAAAATCGTGGGTGGGTGGGCGTGGGAGACTCTCCAGCAAGTGTGTAAGTTAGTAACTGTGTGACAAGTTGCAGCTCCCGTGTCCTAGGGGTGTCCTAGAGGTGCCTTGTCGTGTCCGTAAGGTGTCTCGCCGTGTCGAAAATAAAAAATAATAATGAATTAATGGACACGCCAGCTGGCATGTCGGACATGTGTCGGTGTTGGACACGTGTCCGATCGACCAACACTGACACCTCGCCATTTTAGAAGTGTCGGTGCTTTATAGCTCTCACATTTTTACTTCTTTCAAAATTTTCTGAAAAGTCCAAACCTAATTAGAGCAAAAGCTTTGTGAGCTGCAAATGGATTTATTAAACAGGTCTCAGAGATTTCGTTTATAAGAGTCTGAATGATTTCTGTCCAATCATCAAAAGGATGTAATCTTGTGATAACAAGAATTTCAAAAAAAATCCAAATTTCCCACCTCCTTTACTCTCTTTATCCGAAGAAACTTCAGCTGCAATAAAACTTGTTGAGGCAAGAAGGTGCCCTCAGATTCTTGTTAACGAAGAATTCTTAAAAAATCCTTTCCTTGGGCGTACAAAGATCTATTCCACTTATAGGCTTTTTATGAAAAAATTCGTTCAACATTTTCCAAAAGACCCTCCACCCTGTTTCTTGAAATCGACCAAAATGGAGTTCATGGCACCACCATTATATTGGAAAGAAATCTCAATGAACCAACCAGAATGGTTAGAACTTTAAGGATTCTAAAACAGATTTTCTACAAGCATCAGCATGCTTAACTCGATTCCAAAGCGAGGCAAGGGATTGTTCCAAGCATGAACATATTTCCTTTTCTTCTAGAAGATAAGCTCTATGAGCATAAGAAACAAACAAAGAAGGAAAGTCATCATGGGTTGGCTTAGTGATAAAAAAAAGGAGACGTAGTCTCAATAAATGGTTAGGAGGTCATGTGTTCAATCCATAATGATCACCTAGGAATTAATATCCTACGAGTTTCCTACCCAAATGTTGTAGGGTCACAGGTGGGTTGTCCCGTGAGATTTGAGGTGCGCGCGTAAGCTAGCCCGGACACTCATGGATATAAAAAAAATAAACAAACAAAGAAGGGATTGTTGGCAATGCTACAAGTGCTTTCCATCCAACTCAATGACAAACTCTAAACGAAAGCAAAAACGAACCAACCAAGGCAAAATGCTCATCTTAGATGAAGATTCCAACGAAGAAGAACCGGTTGAAGGGTAATAAAAGCTTGCTTTAATGCAAAATATGAGAAAAAAATCCGGTTGAAAGCTTGGGAAAGAACAAAAGGGAAGAAGAAAAGATTAAACATTGTGATTTGAATAAAGACACAAGTCATAGTTTGATTTGATAATCTAAATAAATGCAATTCTTTTTTGAATTTTCAGATTCCTCTTGATCGATATTTACCAACATGGAGAGGGAATGTAATAGATTCAGAGTTGGAAATGAACCCATCTCGTATTGTTGGGTTGTCTTTATCAGTTAATGCTGCTGCTGGCGTTCCTGGTGCTACATCCGGCCCTGGTGACTTTAAACTGGAAATTGATTGGATCAAAGCCTTGAGAACTCAGTGAGTCAGTTTTGGTTTCGTTACATATTGGGAATACTTAATTATGATCAAATTTTAATTTCCAACCCCAATAAAATGCAATTTTTGTACCAAATTATGATCAAAACTTTTGTTGTTTGAAGAACGTAGTTTAGAATATACAAACACATCTCATTTTGATCTTTAGACATTGAAGGTGACATGTTACGAGAGAAGGGAAGATTAAAAGATGGCTTACTAT

mRNA sequence

ATGGGAGGGAAAGAAACCAAAGTTGCCGGCAATGGAGGGTTGGAGGGTTTTCAAGTTGCCGGCGTGGAGAGTCTTCAAATCGCTGGTGGTGGGTGGTCTTCAAGTCGTTGGCGTCTGATGAAGGAGGAAAAATCGTGGGTGGGTGGGCGTGGGAGACTCTCCAGCAAGTGTATTCCTCTTGATCGATATTTACCAACATGGAGAGGGAATGTAATAGATTCAGAGTTGGAAATGAACCCATCTCGTATTGTTGGGTTGTCTTTATCAGTTAATGCTGCTGCTGGCGTTCCTGGTGCTACATCCGGCCCTGGTGACTTTAAACTGGAAATTGATTGGATCAAAGCCTTGAGAACTCAGTGAGTCAGTTTTGGTTTCGTTACATATTGGGAATACTTAATTATGATCAAATTTTAATTTCCAACCCCAATAAAATGCAATTTTTGTACCAAATTATGATCAAAACTTTTGTTGTTTGAAGAACGTAGTTTAGAATATACAAACACATCTCATTTTGATCTTTAGACATTGAAGGTGACATGTTACGAGAGAAGGGAAGATTAAAAGATGGCTTACTAT

Coding sequence (CDS)

ATGGGAGGGAAAGAAACCAAAGTTGCCGGCAATGGAGGGTTGGAGGGTTTTCAAGTTGCCGGCGTGGAGAGTCTTCAAATCGCTGGTGGTGGGTGGTCTTCAAGTCGTTGGCGTCTGATGAAGGAGGAAAAATCGTGGGTGGGTGGGCGTGGGAGACTCTCCAGCAAGTGTATTCCTCTTGATCGATATTTACCAACATGGAGAGGGAATGTAATAGATTCAGAGTTGGAAATGAACCCATCTCGTATTGTTGGGTTGTCTTTATCAGTTAATGCTGCTGCTGGCGTTCCTGGTGCTACATCCGGCCCTGGTGACTTTAAACTGGAAATTGATTGGATCAAAGCCTTGAGAACTCAGTGA

Protein sequence

MGGKETKVAGNGGLEGFQVAGVESLQIAGGGWSSSRWRLMKEEKSWVGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALRTQ
BLAST of Lsi07G003550 vs. Swiss-Prot
Match: CIA30_ARATH (Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-21
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPL RYLPTWRGNVID E+EMNP R++G+SLSVNA  G  GA SG GDF++EIDWIKALR
Sbjct: 166 IPLARYLPTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWIKALR 225

BLAST of Lsi07G003550 vs. TrEMBL
Match: A0A0A0KYV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011000 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 41  KEEKSW----VGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGV 100
           +E+ SW    +  +G      IP DRYLPTWRG+VIDSELEMNPSRIVG+SLS+NAA G+
Sbjct: 143 EEDNSWQAFFLAPKGDWYITKIPFDRYLPTWRGHVIDSELEMNPSRIVGMSLSINAAGGI 202

Query: 101 PGATSGPGDFKLEIDWIKALRTQ 120
           PGA SGPGDF++EIDWIKALRTQ
Sbjct: 203 PGARSGPGDFQVEIDWIKALRTQ 225

BLAST of Lsi07G003550 vs. TrEMBL
Match: A5BUU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015801 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.6e-24
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPL  YLPTWRGNVID+E+EMNPSRIVG+SLSVN+  GVPGAT+GPGDFKLEIDWIKALR
Sbjct: 176 IPLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALR 235

Query: 118 TQ 120
           TQ
Sbjct: 236 TQ 237

BLAST of Lsi07G003550 vs. TrEMBL
Match: D7TZM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00680 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.6e-24
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPL  YLPTWRGNVID+E+EMNPSRIVG+SLSVN+  GVPGAT+GPGDFKLEIDWIKALR
Sbjct: 164 IPLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALR 223

Query: 118 TQ 120
           TQ
Sbjct: 224 TQ 225

BLAST of Lsi07G003550 vs. TrEMBL
Match: A0A0D2S102_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G144400 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPLD YLPTWRGNVI+++LEMNPSRI+G+SLSVNA  GVPGA SGPGDFKLEIDWIKALR
Sbjct: 164 IPLDHYLPTWRGNVIEAKLEMNPSRILGMSLSVNADGGVPGANSGPGDFKLEIDWIKALR 223

Query: 118 TQ 120
           TQ
Sbjct: 224 TQ 225

BLAST of Lsi07G003550 vs. TrEMBL
Match: A0A0D2ULY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G144400 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPLD YLPTWRGNVI+++LEMNPSRI+G+SLSVNA  GVPGA SGPGDFKLEIDWIKALR
Sbjct: 163 IPLDHYLPTWRGNVIEAKLEMNPSRILGMSLSVNADGGVPGANSGPGDFKLEIDWIKALR 222

Query: 118 TQ 120
           TQ
Sbjct: 223 TQ 224

BLAST of Lsi07G003550 vs. TAIR10
Match: AT1G72420.1 (AT1G72420.1 NADH:ubiquinone oxidoreductase intermediate-associated protein 30)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-20
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1

Query: 42  EEKSW----VGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNA-AAGV 101
           E+ SW       +G   +  +PL RYLPTW+GNVID+E+EMNP  +VG+SLSVNA   G 
Sbjct: 146 EDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVIDAEMEMNPGHVVGMSLSVNAQGGGF 205

Query: 102 PGATSGPGDFKLEIDWIKALR 118
            GA SG GDF++EIDWIKA+R
Sbjct: 206 IGAKSGAGDFQVEIDWIKAVR 226

BLAST of Lsi07G003550 vs. TAIR10
Match: AT1G17350.2 (AT1G17350.2 NADH:ubiquinone oxidoreductase intermediate-associated protein 30)

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-16
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFK 108
           IPL RYLPTWRGNVID E+EMNP R++G+SLSVNA  G  GA SG GDF+
Sbjct: 174 IPLARYLPTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFR 223

BLAST of Lsi07G003550 vs. NCBI nr
Match: gi|659108234|ref|XP_008454089.1| (PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 41  KEEKSW----VGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGV 100
           +E+ SW    +  +G      IPLDRYLPTWRGNVID+ELEMNPSRIVG+SLSVNAA   
Sbjct: 143 EEDNSWQAFFLAPKGDWYIAKIPLDRYLPTWRGNVIDAELEMNPSRIVGMSLSVNAAGRF 202

Query: 101 PGATSGPGDFKLEIDWIKALRTQ 120
           PGATSGPGDF++EIDWIKALRTQ
Sbjct: 203 PGATSGPGDFQVEIDWIKALRTQ 225

BLAST of Lsi07G003550 vs. NCBI nr
Match: gi|659108232|ref|XP_008454088.1| (PREDICTED: probable complex I intermediate-associated protein 30 isoform X1 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 41  KEEKSW----VGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGV 100
           +E+ SW    +  +G      IPLDRYLPTWRGNVID+ELEMNPSRIVG+SLSVNAA   
Sbjct: 147 EEDNSWQAFFLAPKGDWYIAKIPLDRYLPTWRGNVIDAELEMNPSRIVGMSLSVNAAGRF 206

Query: 101 PGATSGPGDFKLEIDWIKALRTQ 120
           PGATSGPGDF++EIDWIKALRTQ
Sbjct: 207 PGATSGPGDFQVEIDWIKALRTQ 229

BLAST of Lsi07G003550 vs. NCBI nr
Match: gi|449468868|ref|XP_004152143.1| (PREDICTED: probable complex I intermediate-associated protein 30 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 41  KEEKSW----VGGRGRLSSKCIPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGV 100
           +E+ SW    +  +G      IP DRYLPTWRG+VIDSELEMNPSRIVG+SLS+NAA G+
Sbjct: 143 EEDNSWQAFFLAPKGDWYITKIPFDRYLPTWRGHVIDSELEMNPSRIVGMSLSINAAGGI 202

Query: 101 PGATSGPGDFKLEIDWIKALRTQ 120
           PGA SGPGDF++EIDWIKALRTQ
Sbjct: 203 PGARSGPGDFQVEIDWIKALRTQ 225

BLAST of Lsi07G003550 vs. NCBI nr
Match: gi|147782669|emb|CAN61795.1| (hypothetical protein VITISV_015801 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 9.5e-24
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPL  YLPTWRGNVID+E+EMNPSRIVG+SLSVN+  GVPGAT+GPGDFKLEIDWIKALR
Sbjct: 176 IPLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALR 235

Query: 118 TQ 120
           TQ
Sbjct: 236 TQ 237

BLAST of Lsi07G003550 vs. NCBI nr
Match: gi|731401701|ref|XP_010654387.1| (PREDICTED: probable complex I intermediate-associated protein 30 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 9.5e-24
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1

Query: 58  IPLDRYLPTWRGNVIDSELEMNPSRIVGLSLSVNAAAGVPGATSGPGDFKLEIDWIKALR 117
           IPL  YLPTWRGNVID+E+EMNPSRIVG+SLSVN+  GVPGAT+GPGDFKLEIDWIKALR
Sbjct: 164 IPLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALR 223

Query: 118 TQ 120
           TQ
Sbjct: 224 TQ 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CIA30_ARATH9.9e-2175.00Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0KYV2_CUCSA1.0e-2468.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011000 PE=4 SV=1[more]
A5BUU9_VITVI6.6e-2485.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015801 PE=4 SV=1[more]
D7TZM4_VITVI6.6e-2485.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00680 PE=4 SV=... [more]
A0A0D2S102_GOSRA1.1e-2385.48Uncharacterized protein OS=Gossypium raimondii GN=B456_009G144400 PE=4 SV=1[more]
A0A0D2ULY4_GOSRA1.1e-2385.48Uncharacterized protein OS=Gossypium raimondii GN=B456_009G144400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72420.12.3e-2056.79 NADH:ubiquinone oxidoreductase intermediate-associated protein 30[more]
AT1G17350.25.9e-1672.00 NADH:ubiquinone oxidoreductase intermediate-associated protein 30[more]
Match NameE-valueIdentityDescription
gi|659108234|ref|XP_008454089.1|1.1e-2471.08PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Cuc... [more]
gi|659108232|ref|XP_008454088.1|1.1e-2471.08PREDICTED: probable complex I intermediate-associated protein 30 isoform X1 [Cuc... [more]
gi|449468868|ref|XP_004152143.1|1.5e-2468.67PREDICTED: probable complex I intermediate-associated protein 30 [Cucumis sativu... [more]
gi|147782669|emb|CAN61795.1|9.5e-2485.48hypothetical protein VITISV_015801 [Vitis vinifera][more]
gi|731401701|ref|XP_010654387.1|9.5e-2485.48PREDICTED: probable complex I intermediate-associated protein 30 [Vitis vinifera... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013857NADH-UbQ_OxRdtase-assoc_prot30
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G003550.1Lsi07G003550.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013857NADH:ubiquinone oxidoreductase intermediate-associated protein 30PFAMPF08547CIA30coord: 54..110
score: 2.
NoneNo IPR availablePANTHERPTHR13194COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30coord: 58..117
score: 9.3