Lsi07G003490 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G003490
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_890
Locationchr07 : 3720889 .. 3721113 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTCGGGAAATTGGGTGTTGTTTTGATTGTCCTCGTCTTCGCCGTGGCGTTGCTCAGCAACATCGACGCCGTGGACGCTGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACAGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGTCCCAGCCCCAAAGGCCCTGGCCACTGA

mRNA sequence

ATGAATTTCGGGAAATTGGGTGTTGTTTTGATTGTCCTCGTCTTCGCCGTGGCGTTGCTCAGCAACATCGACGCCGTGGACGCTGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACAGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGTCCCAGCCCCAAAGGCCCTGGCCACTGA

Coding sequence (CDS)

ATGAATTTCGGGAAATTGGGTGTTGTTTTGATTGTCCTCGTCTTCGCCGTGGCGTTGCTCAGCAACATCGACGCCGTGGACGCTGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACAGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGTCCCAGCCCCAAAGGCCCTGGCCACTGA

Protein sequence

MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPKGPGH
Homology
[Close]
BLAST of Lsi07G003490 vs. TrEMBL
Match: A0A0A0KU27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.5e-29
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MNFGKL V+LIVLV A+ LLSN   VDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL
Sbjct: 1  MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
          GRLSSGPSPKGPGH
Sbjct: 61 GRLSSGPSPKGPGH 74

[Close]
BLAST of Lsi07G003490 vs. TrEMBL
Match: A0A0D2UTQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN  KL  +LI+ V ++A+LS++  V+A RV+  DFA  NHLE Y S YE+AK T+SCWL
Sbjct: 1  MNSRKLNTLLIIFVISMAILSHV-GVEATRVLAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
           RL+SGPSP+GPGH
Sbjct: 61 ERLASGPSPRGPGH 73

[Close]
BLAST of Lsi07G003490 vs. TrEMBL
Match: A0A067L755_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          M+F K  ++L++ +  +A +S +  V+A RV+P DFAS NHLE Y S YE+A+ T++CWL
Sbjct: 1  MSFKKATLLLVIFLIYMAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWL 60

Query: 61 GRLSSGPSPKGPGH 75
          G+L+SGPSP+GPGH
Sbjct: 61 GKLASGPSPRGPGH 73

[Close]
BLAST of Lsi07G003490 vs. TrEMBL
Match: W9R3D2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018125 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-13
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 1   MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
           MN  K+  +LI+ V AVA+L+ + + +A RV+  DF   NHLE YPS YE AK +++ WL
Sbjct: 61  MNSAKITSLLIIFVLAVAVLNLVGSAEAGRVLSEDFGGENHLEKYPSVYENAKQSLTFWL 120

Query: 61  GRLSSGPSPKGPGH 75
            RLSSGPSP GPGH
Sbjct: 121 QRLSSGPSPSGPGH 134

[Close]
BLAST of Lsi07G003490 vs. TrEMBL
Match: B9IFV6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-13
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSN-IDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCW 60
          M+F K    LI+ V  V+ LS  +  V A RV+PG+ A  NHLE Y S YE+ K+ ++CW
Sbjct: 1  MDFAKRSYPLILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACW 60

Query: 61 LGRLSSGPSPKGPGH 75
          LGRL+SGPSP+GPGH
Sbjct: 61 LGRLASGPSPRGPGH 75

[Close]
BLAST of Lsi07G003490 vs. NCBI nr
Match: gi|700197850|gb|KGN53008.1| (hypothetical protein Csa_4G011070 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MNFGKL V+LIVLV A+ LLSN   VDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL
Sbjct: 1  MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
          GRLSSGPSPKGPGH
Sbjct: 61 GRLSSGPSPKGPGH 74

[Close]
BLAST of Lsi07G003490 vs. NCBI nr
Match: gi|763804763|gb|KJB71701.1| (hypothetical protein B456_011G137700 [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN  KL  +LI+ V ++A+LS++  V+A RV+  DFA  NHLE Y S YE+AK T+SCWL
Sbjct: 1  MNSRKLNTLLIIFVISMAILSHV-GVEATRVLAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
           RL+SGPSP+GPGH
Sbjct: 61 ERLASGPSPRGPGH 73

[Close]
BLAST of Lsi07G003490 vs. NCBI nr
Match: gi|643738283|gb|KDP44271.1| (hypothetical protein JCGZ_05738 [Jatropha curcas])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          M+F K  ++L++ +  +A +S +  V+A RV+P DFAS NHLE Y S YE+A+ T++CWL
Sbjct: 1  MSFKKATLLLVIFLIYMAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWL 60

Query: 61 GRLSSGPSPKGPGH 75
          G+L+SGPSP+GPGH
Sbjct: 61 GKLASGPSPRGPGH 73

[Close]
BLAST of Lsi07G003490 vs. NCBI nr
Match: gi|703090537|ref|XP_010094108.1| (hypothetical protein L484_018125 [Morus notabilis])

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 1   MNFGKLGVVLIVLVFAVALLSNIDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
           MN  K+  +LI+ V AVA+L+ + + +A RV+  DF   NHLE YPS YE AK +++ WL
Sbjct: 61  MNSAKITSLLIIFVLAVAVLNLVGSAEAGRVLSEDFGGENHLEKYPSVYENAKQSLTFWL 120

Query: 61  GRLSSGPSPKGPGH 75
            RLSSGPSP GPGH
Sbjct: 121 QRLSSGPSPSGPGH 134

[Close]
BLAST of Lsi07G003490 vs. NCBI nr
Match: gi|224138838|ref|XP_002322914.1| (hypothetical protein POPTR_0016s10640g [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 1  MNFGKLGVVLIVLVFAVALLSN-IDAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCW 60
          M+F K    LI+ V  V+ LS  +  V A RV+PG+ A  NHLE Y S YE+ K+ ++CW
Sbjct: 1  MDFAKRSYPLILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACW 60

Query: 61 LGRLSSGPSPKGPGH 75
          LGRL+SGPSP+GPGH
Sbjct: 61 LGRLASGPSPRGPGH 75

The following BLAST results are available for this feature:
BLAST of Lsi07G003490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G003490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU27_CUCSA9.5e-2989.19Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1[more]
A0A0D2UTQ2_GOSRA1.0e-1458.11Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137700 PE=4 SV=1[more]
A0A067L755_JATCU2.3e-1452.70Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1[more]
W9R3D2_9ROSA2.5e-1354.05Uncharacterized protein OS=Morus notabilis GN=L484_018125 PE=4 SV=1[more]
B9IFV6_POPTR4.3e-1353.33Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1[more]
BLAST of Lsi07G003490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G003490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197850|gb|KGN53008.1|1.4e-2889.19hypothetical protein Csa_4G011070 [Cucumis sativus][more]
gi|763804763|gb|KJB71701.1|1.5e-1458.11hypothetical protein B456_011G137700 [Gossypium raimondii][more]
gi|643738283|gb|KDP44271.1|3.3e-1452.70hypothetical protein JCGZ_05738 [Jatropha curcas][more]
gi|703090537|ref|XP_010094108.1|3.6e-1354.05hypothetical protein L484_018125 [Morus notabilis][more]
gi|224138838|ref|XP_002322914.1|6.1e-1353.33hypothetical protein POPTR_0016s10640g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G003490.1Lsi07G003490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37245FAMILY NOT NAMEDcoord: 1..74
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G003490Cucumber (Gy14) v1cgylsiB113
Lsi07G003490Cucurbita maxima (Rimu)cmalsiB256
Lsi07G003490Cucurbita maxima (Rimu)cmalsiB773
Lsi07G003490Cucurbita moschata (Rifu)cmolsiB244
Lsi07G003490Cucurbita moschata (Rifu)cmolsiB764
Lsi07G003490Cucurbita pepo (Zucchini)cpelsiB516
Lsi07G003490Cucurbita pepo (Zucchini)cpelsiB726
Lsi07G003490Wild cucumber (PI 183967)cpilsiB311
Lsi07G003490Cucumber (Chinese Long) v2culsiB312
Lsi07G003490Melon (DHL92) v3.5.1lsimeB447
Lsi07G003490Watermelon (Charleston Gray)lsiwcgB416
Lsi07G003490Watermelon (97103) v1lsiwmB435
Lsi07G003490Cucumber (Gy14) v2cgyblsiB285
Lsi07G003490Melon (DHL92) v3.6.1lsimedB465
Lsi07G003490Silver-seed gourdcarlsiB109
Lsi07G003490Silver-seed gourdcarlsiB635
Lsi07G003490Cucumber (Chinese Long) v3cuclsiB331
Lsi07G003490Watermelon (97103) v2lsiwmbB415
Lsi07G003490Wax gourdlsiwgoB548