Lsi07G003210 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi07G003210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 3432024 .. 3434560 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATGTTCCATTACTTAGCTAAATTCTTACATCTGTTCCAAACTGATGTAGCGATTTAGTTGAATAGGTTTGGTAAATTTCTTTTTTTAGTTTTTTTAATTACTTAATAAATATTTGGGAGAGGTTTTGAAATAGTTTAAAATCACTTTTATTATATTCAAACTCACTATAAAACACGTTGATCTAAGGTTTGATTTTATACTTTTAAATGCAATTTTCATGCGATGATTAAAATTGATTTTAAATTATTAAAACTTTTTTTGGAGTTCTTTAGTGGAGATAACAAAAGTGATCTTGATCTTTACAAAATCATTCTCAAACATGTTTTTAGGGTATGTTTGGAATCGTTAAAATCACTTTTGTCATTTTTAAAATCACTCAAAAACACACTTTAATCACTCAAAATTAATTTAATTTTCAATTTTACACTTTTAAATGCAATTTTCAATCATCAAAATTAGTTTTGAAGGATTAAAAACATATTTCACGGTGATTTTGAAAATGACAAAAGTGATTTTAGCCATTTTAAAATTATTCCTAAATATATCCTTAATCTGTTGCTAAATACTCTATATAAATAGACAGTTAAAGTGTCTAACATAATTTGCACTTCAAGTCCAAACACAAACTATCAAACTTCAAAGACTATTCTAACTCCACAAATTATAATAACGGCTGAGGAGGTGTTTGAGCTACCAACTTCAAGTTGGTAGACTAATGTTTAGAGCTCTAAATATAATATTGTTGTTTATAACTATTTATAAACTATAATTAAAAATAATAAAAACTATTTCAACTTTCAAGACACTCTTTGTTATATTTACTATTTTCTACTTATTTTCTCTCTTTACAAGGTTTATTATTTTCTACTCAAATTAAAATATTTTGTACCAAAGCACATACTATTATAACTAATCAACTATAATAACACTATTGCTAAAACGAGCATAATTCAACTGCCATACGAGTGTCTCGAACTACCACGAGATTAGTAGTTCGAATCTCCGTATTCCGAATTGTACCAAAAAAGAAAAAACTACAACAACTAATTCAATGATGTAAATGTCTTATTTGTAAGGAGCTCTCCAAACAACCCCCGAACGGTTATTGTTCTAAGGTGTTATACATTGATAGGAAAAGCAAAAGCCAGAATGGGAGAGACGGAAGAGGCTGTGGTGTGAAGTGAAGTATTGAATGAATCTAAGGTGTCTTGAGAAATTCCATGACATAAGTGTTAAAAGCACAACAGTGGACTTTGAAACCATGAAATCCAGCCGCCTTAGACAAGGCTTCAAACTCCTTCTCGGTTCTTTCTTTGCCTCCGGGGTTGTGAGCCAGCATTATGAGGTCGATGTGAATGACTCCCTTCGTGGCGAGGCTGCTGTCCGGTGCTACAGGAAGAATGCATTCAGCAACGATCACCTTGCCGTGCTCCGGCAGCGCATCGTAGCAATTCTTCAAGAATTTGAGGCAGTGCTGGTCGCTCCAATCGTGGCAGATCCACTGTGCAGTGTAAGCAGTAAGCGTTAGATATATTTTTATTAAAATGTTGCTATATACTTAATTATTATTACCATGAATACAGAGGGGAGTAGTAGAAATGAAAGAATAATGATGTTATGTTATGTTAACCTTCATGAAAATGGCATCCCCCTTTGGAACGCTGTCAAACATGTCGCCCCCAACATGGTCGACGCCTGAAGACAAGGCAGAGAGTTGAATTTGAATTAGTGAATTGTGAATTGTGAAACAGAAGTAGCATTATATATAGAATTAAGGTAGGTAGGTAGGTTACCTGGGTAGGCAGGGGCATCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCTTAATAGAAGGGTACTTGGAAACTATCATGTTGAGAACGGCTCCAGTGCCACCTCCCACATCCACCACTGAATTAAGCCCTCCAAACCCTTTATACGTCTCCAGAATCTTCTTCATGGTAATGGTAGAATGCTCCGACATTCCCCTGTTGAACACCTTGTTGAATCTCGGATCTGTTCCATGGTATTCGAACGCACTCATTCCATACGCTTTGTTGAACGGAATCCCACCTTCAAGCACTGCATCTTTCAAATGGTACCAGCTCTCCATCAGGACCTTGTCCTGATTCATGAGACAAAGAGGAGCAATAGAGACGCCATCTTGATTCTTGATCAAGAACTTCGAGACAGGGGCCAGTCCGTAGAGCCTCTCCACGGAGCCATCGGGGAGGGGATTGAGGGAGTAAGTTAGGATAGAGTAGCTAGCCAGCAGGCGCAACATGCGGTCCAGCATCACGTGGGCCTCGGGGTTTTTAGCCCCTGACAGCTGGGAAGCGATTTGTGAGGGGGATAACACGGCCCCCTCTCCACCCCTTCCAATGATCTCCAGCACGTCCAGCTCAATCGCCGCCTTCAGCACCATCGGAAGGACGGAGGCGCTAGCCAGTTGCATAGCGAACAGCTGGGCTTCCTCATCGCTCACCAAAGATCCCATTATTCTTAAAATTTCTTTTGCTTTTGCTTAA

mRNA sequence

ATGGCAAATGAAAAGCAAAAGCCAGAATGGGAGAGACGGAAGAGGCTGTGGTGTGAAGTGAAGTGTCTTGAGAAATTCCATGACATAAGTGTTAAAAGCACAACAGTGGACTTTGAAACCATGAAATCCAGCCGCCTTAGACAAGGCTTCAAACTCCTTCTCGGTTCTTTCTTTGCCTCCGGGGTTGTGAGCCAGCATTATGAGGTCGATGTGAATGACTCCCTTCGTGGCGAGGCTGCTGTCCGGTGCTACAGGAAGAATGCATTCAGCAACGATCACCTTGCCGTGCTCCGGCAGCGCATCGTAGCAATTCTTCAAGAATTTGAGGCAGTGCTGGTCGCTCCAATCGTGGCAGATCCACTGTGCAGTGTTACCTGGGTAGGCAGGGGCATCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCTTAATAGAAGGAATCTTCTTCATGGTAATGGTAGAATGCTCCGACATTCCCCTGTTGAACACCTTGTTGAATCTCGGATCTGTTCCATGGTATTCGAACGCACTCATTCCATACGCTTTGTTGAACGGAATCCCACCTTCAAGCACTGCATCTTTCAAATGGTACCAGCTCTCCATCAGGACCTTGTCCTGATTCATGAGACAAAGAGGAGCAATAGAGACGCCATCTTGATTCTTGATCAAGAACTTCGAGACAGGGGCCAGTCCGTAGAGCCTCTCCACGGAGCCATCGGGGAGGGGATTGAGGGACTAGCCAGCAGGCGCAACATGCGGTCCAGCATCACGTGGGCCTCGGGGTTTTTAGCCCCTGACAGCTGGGAAGCGATTTGTGAGGGGGATAACACGGCCCCCTCTCCACCCCTTCCAATGATCTCCAGCACGTCCAGCTCAATCGCCGCCTTCAGCACCATCGGAAGGACGGAGGCGCTAGCCAGTTGCATAGCGAACAGCTGGGCTTCCTCATCGCTCACCAAAGATCCCATTATTCTTAAAATTTCTTTTGCTTTTGCTTAA

Coding sequence (CDS)

ATGGCAAATGAAAAGCAAAAGCCAGAATGGGAGAGACGGAAGAGGCTGTGGTGTGAAGTGAAGTGTCTTGAGAAATTCCATGACATAAGTGTTAAAAGCACAACAGTGGACTTTGAAACCATGAAATCCAGCCGCCTTAGACAAGGCTTCAAACTCCTTCTCGGTTCTTTCTTTGCCTCCGGGGTTGTGAGCCAGCATTATGAGGTCGATGTGAATGACTCCCTTCGTGGCGAGGCTGCTGTCCGGTGCTACAGGAAGAATGCATTCAGCAACGATCACCTTGCCGTGCTCCGGCAGCGCATCGTAGCAATTCTTCAAGAATTTGAGGCAGTGCTGGTCGCTCCAATCGTGGCAGATCCACTGTGCAGTGTTACCTGGGTAGGCAGGGGCATCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCTTAATAGAAGGAATCTTCTTCATGGTAATGGTAGAATGCTCCGACATTCCCCTGTTGAACACCTTGTTGAATCTCGGATCTGTTCCATGGTATTCGAACGCACTCATTCCATACGCTTTGTTGAACGGAATCCCACCTTCAAGCACTGCATCTTTCAAATGGTACCAGCTCTCCATCAGGACCTTGTCCTGATTCATGAGACAAAGAGGAGCAATAGAGACGCCATCTTGATTCTTGATCAAGAACTTCGAGACAGGGGCCAGTCCGTAGAGCCTCTCCACGGAGCCATCGGGGAGGGGATTGAGGGACTAGCCAGCAGGCGCAACATGCGGTCCAGCATCACGTGGGCCTCGGGGTTTTTAGCCCCTGACAGCTGGGAAGCGATTTGTGAGGGGGATAACACGGCCCCCTCTCCACCCCTTCCAATGATCTCCAGCACGTCCAGCTCAATCGCCGCCTTCAGCACCATCGGAAGGACGGAGGCGCTAGCCAGTTGCATAGCGAACAGCTGGGCTTCCTCATCGCTCACCAAAGATCCCATTATTCTTAAAATTTCTTTTGCTTTTGCTTAA

Protein sequence

MANEKQKPEWERRKRLWCEVKCLEKFHDISVKSTTVDFETMKSSRLRQGFKLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEAVLVAPIVADPLCSVTWVGRGILNDMREVEVDALNRRNLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRFVERNPTFKHCIFQMVPALHQDLVLIHETKRSNRDAILILDQELRDRGQSVEPLHGAIGEGIEGLASRRNMRSSITWASGFLAPDSWEAICEGDNTAPSPPLPMISSTSSSIAAFSTIGRTEALASCIANSWASSSLTKDPIILKISFAFA
BLAST of Lsi07G003210 vs. TrEMBL
Match: C4J6W8_MAIZE (Uncharacterized protein OS=Zea mays GN=Zm.160742 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 83/237 (35.02%), Postives = 123/237 (51.90%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 230
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

Query: 231 VERNPTFKHCIFQMVPALHQDLVLIHETKRSNRDAILILDQELRDRGQSVEPLHGAI 240
           VER+   +H + ++VPALH+DLVL+HE +  +  A+L+  + L D    V  L  A+
Sbjct: 219 VERDAAVQHRVLEIVPALHEDLVLVHEREGGHGHAVLVGGEPLADGRGGVAALVPAV 275

BLAST of Lsi07G003210 vs. TrEMBL
Match: C4JBG2_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 78/218 (35.78%), Postives = 116/218 (53.21%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 221
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

BLAST of Lsi07G003210 vs. TrEMBL
Match: C0PCA7_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.8e-17
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 200
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

BLAST of Lsi07G003210 vs. TrEMBL
Match: A0A0E0EI39_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV   L     V   R++A  + HL VLRQR+VA+ Q+  A
Sbjct: 56  ELPLVPLLAAGVVGEHDHVDVEHPLLPRRRVGALRQHALHHHHLPVLRQRVVAVPQQPRA 115

Query: 111 VLVAPIVADPL 122
           VLVAP+V DPL
Sbjct: 116 VLVAPVVEDPL 126

BLAST of Lsi07G003210 vs. NCBI nr
Match: gi|238011766|gb|ACR36918.1| (unknown [Zea mays])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 83/237 (35.02%), Postives = 123/237 (51.90%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 230
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

Query: 231 VERNPTFKHCIFQMVPALHQDLVLIHETKRSNRDAILILDQELRDRGQSVEPLHGAI 240
           VER+   +H + ++VPALH+DLVL+HE +  +  A+L+  + L D    V  L  A+
Sbjct: 219 VERDAAVQHRVLEIVPALHEDLVLVHEREGGHGHAVLVGGEPLADGRGGVAALVPAV 275

BLAST of Lsi07G003210 vs. NCBI nr
Match: gi|238014954|gb|ACR38512.1| (unknown [Zea mays])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 78/218 (35.78%), Postives = 116/218 (53.21%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 221
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

BLAST of Lsi07G003210 vs. NCBI nr
Match: gi|223975229|gb|ACN31802.1| (unknown [Zea mays])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 1

Query: 51  KLLLGSFFASGVVSQHYEVDVNDSLRGEAAVRCYRKNAFSNDHLAVLRQRIVAILQEFEA 110
           +L L    A+GVV +H  VDV D+LR    +R  R++A  +D LA+ RQR+VA+L++  A
Sbjct: 39  ELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIFRQRVVAVLEQRGA 98

Query: 111 VLVAPIVADPL---------------CSVTWVG--RGILNDMREVEVD------------ 170
           V VAP+V DPL                 V   G  R + +D+R+VEVD            
Sbjct: 99  VRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEVDPGDVRVAGRDGV 158

Query: 171 ---------------ALNRR----NLLHGNGRMLRHSPVEHLVESRICSMVFERTHSIRF 200
                          AL  R     LL  + R++ H+ VEH VE+R+ ++V ER H +R 
Sbjct: 159 QRGAHAAAHVHQRRHALEARVEVQQLLGDDHRVVLHALVEHAVEARVRAVVLERRHPVRL 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
C4J6W8_MAIZE1.3e-2435.02Uncharacterized protein OS=Zea mays GN=Zm.160742 PE=2 SV=1[more]
C4JBG2_MAIZE1.1e-2335.78Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
C0PCA7_MAIZE5.8e-1734.52Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
A0A0E0EI39_9ORYZ3.5e-0647.89Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|238011766|gb|ACR36918.1|1.8e-2435.02unknown [Zea mays][more]
gi|238014954|gb|ACR38512.1|1.6e-2335.78unknown [Zea mays][more]
gi|223975229|gb|ACN31802.1|8.3e-1734.52unknown [Zea mays][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G003210.1Lsi07G003210.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None