Lsi07G002760 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G002760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SPIRAL1-like5
Location	chr07 : 2991277 .. 2992193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAATTAGGGTTTTCAAAGCTAAAGATCATCAGATCCAGCCAGAAGGCAATATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGCTCTTTAGGCTATCTTTTTGGTAAGGATGATCAACCCATAAAGCCTCAAGTTACCAAAGTTGTTCTTCCTCCTCCTTATGGAATTGATCTCAACCCTCACGATAATAGCAATAATAATCCTTCTCCTTCTCCTTCTTCTCCTTCTCCCTCTCCCTCTCCATCTCCCAAACAACTTGTTTCCAATAATTATCCTCGAGCTCATGGCCAAAACTCCGGCAACTTCATAACGGTAATCCGTTTTTTAAATCTCGAATATATGGATTTCAAATGAATTCTATTATGTTAGTTAATTACTCCATACGATTGACAGGATTTAAAATCGTTTCTTGAACTTTTTGAATCAGGATCGTCCATCAACCAAGGTGAAATCTGTTCCGGGTGGCGATTCGTCGCTAGGGTATCTGTTTGGAGATAAGTGAAATATTAATATCTATCTCTCTAGCTGACTATATTGGGAAGGAAATTCTAAAGGGTAATATGCTTTAGTATGAGTGGTTTTTCTGAATAAAATGTGTGCAATTATGATTATGTAGCTTGAGAATTTGTGTAGCCCTATATAGTTTGATATAGTTTGTACTTGTGTTATATAGCTAGTGATCTATTTGTTAAACCAATCTGATGCTTCAAATATCTATGTAATTGAATAGCATCATGATATGATTGTAGTTTTAATTTGTTAGTCTATTGTCAAAATTTGTGAGGACCAATAAACATGAAATTGCACTTTTTATTTGATTTGAGTGTTTCAATATTCATTGTGTTTGTGGTTGCTTTAAAACTAGGAGTTGAATGGTATTAGCTATATATATAAAACCAAAATTCTATTT

mRNA sequence

ACAAATTAGGGTTTTCAAAGCTAAAGATCATCAGATCCAGCCAGAAGGCAATATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGCTCTTTAGGCTATCTTTTTGGTAAGGATGATCAACCCATAAAGCCTCAAGTTACCAAAGTTGTTCTTCCTCCTCCTTATGGAATTGATCTCAACCCTCACGATAATAGCAATAATAATCCTTCTCCTTCTCCTTCTTCTCCTTCTCCCTCTCCCTCTCCATCTCCCAAACAACTTGTTTCCAATAATTATCCTCGAGCTCATGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGTTCCGGGTGGCGATTCGTCGCTAGGGTATCTGTTTGGAGATAAGTGAAATATTAATATCTATCTCTCTAGCTGACTATATTGGGAAGGAAATTCTAAAGGGTAATATGCTTTAGTATGAGTGGTTTTTCTGAATAAAATGTGTGCAATTATGATTATGTAGCTTGAGAATTTGTGTAGCCCTATATAGTTTGATATAGTTTGTACTTGTGTTATATAGCTAGTGATCTATTTGTTAAACCAATCTGATGCTTCAAATATCTATGTAATTGAATAGCATCATGATATGATTGTAGTTTTAATTTGTTAGTCTATTGTCAAAATTTGTGAGGACCAATAAACATGAAATTGCACTTTTTATTTGATTTGAGTGTTTCAATATTCATTGTGTTTGTGGTTGCTTTAAAACTAGGAGTTGAATGGTATTAGCTATATATATAAAACCAAAATTCTATTT

Coding sequence (CDS)

ATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGCTCTTTAGGCTATCTTTTTGGTAAGGATGATCAACCCATAAAGCCTCAAGTTACCAAAGTTGTTCTTCCTCCTCCTTATGGAATTGATCTCAACCCTCACGATAATAGCAATAATAATCCTTCTCCTTCTCCTTCTTCTCCTTCTCCCTCTCCCTCTCCATCTCCCAAACAACTTGTTTCCAATAATTATCCTCGAGCTCATGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGTTCCGGGTGGCGATTCGTCGCTAGGGTATCTGTTTGGAGATAAGTGA

Protein sequence

MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPSPSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK

Homology

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BLAST of Lsi07G002760 vs. Swiss-Prot
Match: SP1L5_ARATH (Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 63/116 (54.31%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQ----PIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSP 60
           MSRGGS+GGG+SSLGYLFG D++    P  P   K    PPYG+D    D+  +      
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPA--PPYGVDSTEEDHEADQ----- 60

Query: 61  SSPSPSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
                     PK + +NNY R  GQNSGNF+TDRP+TKVKSVPGG SSLGYLFGDK
Sbjct: 61  ---------KPK-ISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGDK 99

[Close]

BLAST of Lsi07G002760 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 60/127 (47.24%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQP---IKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPS 60
           MSRGGS GGG+SSLGYLFG ++ P    KP       P P              P+P+ +
Sbjct: 1   MSRGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPA-------------PAPAAA 60

Query: 61  SPSPSPSPSP------KQLVS--------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDS 111
             +P+  PSP      KQ+ +        NNY RA GQN+GNF+TDRPSTKV + PGG S
Sbjct: 61  VAAPAEKPSPAKADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGS 114

[Close]

BLAST of Lsi07G002760 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 57/128 (44.53%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           M RG S GGG+SSLGYLFG  + P KP +                   NN P+PS  +  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAI-------------------NNAPAPSSETLP 60

Query: 61  PSPSPSPKQLVS------------------NNYPRAHGQNSGNFITDRPSTKVKSVPGGD 111
            S  PSPK + +                  NNY RA GQN+GNF+TDRPSTKV + PGG 
Sbjct: 61  ISADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGG 108

[Close]

BLAST of Lsi07G002760 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           M RG S GGG+SSLGYLFG  + P    V K            P +  ++  +P   + +
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKT-----------PAETESSAHAPPTQAAA 60

Query: 61  PSPSPSPKQLVS-------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 111
            +   S KQ+ +       NNY RA GQN+GNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61  ANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of Lsi07G002760 vs. Swiss-Prot
Match: SPR1_ARATH (Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-14
Identity = 57/125 (45.60%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSP------ 60
           M RG S GGG+SSL YLFG D    KP    V  P P   +      SNN P+P      
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKP----VPAPRPAPTE------SNNGPAPPVTAVT 60

Query: 61  ----SPSSPSPSPSPSPKQLVS------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSS 110
               + ++ S  P+   KQ+ +      NNY RA GQN+GNF+TDRPSTKV + PGG SS
Sbjct: 61  ATALTTATTSVEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSS 115

[Close]

BLAST of Lsi07G002760 vs. TrEMBL
Match: A0A0A0KUV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047940 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-42
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGGRSSLGYLFGKDDQP KPQV+KVVLPPPYGIDLNP D++NN          
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNN---------- 60

Query: 61  PSPSPSPKQLVS-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD 112
             PSPSPKQLVS NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGD
Sbjct: 61  --PSPSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100

[Close]

BLAST of Lsi07G002760 vs. TrEMBL
Match: B9RCG5_RICCO (SP1L, putative OS=Ricinus communis GN=RCOM_1688070 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-29
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+ P  P  ++ V  PPYG+D+ P  N+ NN S       
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDENPTTPPPSQTVNLPPYGVDVIPEKNNPNNLS------- 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
                + K  VSNNY RA GQN+GNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  -----AEKGKVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100

[Close]

BLAST of Lsi07G002760 vs. TrEMBL
Match: D7TV53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00250 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-29
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+QP +P V+  +  PPYGID              P  P 
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDEQPSEPPVSPTIQLPPYGIDT------------IPEKPP 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
             P P+ KQ  SNNY R  GQN+GNFITDRPSTKV+SVPGGDSSLGYLFGDK
Sbjct: 61  NRPPPAEKQSSSNNYQRTQGQNTGNFITDRPSTKVRSVPGGDSSLGYLFGDK 100

[Close]

BLAST of Lsi07G002760 vs. TrEMBL
Match: A9P913_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13150g PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-28
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+QP  P  ++ V  PPYG+D+                 S
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDEQPSAPPPSRPVNLPPYGVDIT-------------IEKS 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
           P    S K+ VSNNY RA GQN+GNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  PDSGSSEKKPVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

[Close]

BLAST of Lsi07G002760 vs. TrEMBL
Match: A0A167V9C5_9ROSI (SP1L1 OS=Salix matsudana PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 71/112 (63.39%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+QP  P   + V  PPYG+D+     +  NP        
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDEQPNAPPPLRPVNLPPYGVDI-----TTENP-------- 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
           P    + K+ VSNNY RA GQN+GNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  PDSGSAEKKQVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

[Close]

BLAST of Lsi07G002760 vs. TAIR10
Match: AT4G23496.1 (AT4G23496.1 SPIRAL1-like5)

HSP 1 Score: 110.5 bits (275), Expect = 6.6e-25
Identity = 63/116 (54.31%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQ----PIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSP 60
           MSRGGS+GGG+SSLGYLFG D++    P  P   K    PPYG+D    D+  +      
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPA--PPYGVDSTEEDHEADQ----- 60

Query: 61  SSPSPSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
                     PK + +NNY R  GQNSGNF+TDRP+TKVKSVPGG SSLGYLFGDK
Sbjct: 61  ---------KPK-ISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGDK 99

[Close]

BLAST of Lsi07G002760 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 57/128 (44.53%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           M RG S GGG+SSLGYLFG  + P KP +                   NN P+PS  +  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAI-------------------NNAPAPSSETLP 60

Query: 61  PSPSPSPKQLVS------------------NNYPRAHGQNSGNFITDRPSTKVKSVPGGD 111
            S  PSPK + +                  NNY RA GQN+GNF+TDRPSTKV + PGG 
Sbjct: 61  ISADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGG 108

[Close]

BLAST of Lsi07G002760 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           M RG S GGG+SSLGYLFG  + P    V K            P +  ++  +P   + +
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKT-----------PAETESSAHAPPTQAAA 60

Query: 61  PSPSPSPKQLVS-------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 111
            +   S KQ+ +       NNY RA GQN+GNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61  ANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of Lsi07G002760 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-15
Identity = 57/125 (45.60%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSP------ 60
           M RG S GGG+SSL YLFG D    KP    V  P P   +      SNN P+P      
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKP----VPAPRPAPTE------SNNGPAPPVTAVT 60

Query: 61  ----SPSSPSPSPSPSPKQLVS------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSS 110
               + ++ S  P+   KQ+ +      NNY RA GQN+GNF+TDRPSTKV + PGG SS
Sbjct: 61  ATALTTATTSVEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSS 115

[Close]

BLAST of Lsi07G002760 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-11
Identity = 45/116 (38.79%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 2   SRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLP-PPYGIDLNPHDNSNNNPSPSPSSPS 61
           +RG + GGG SSLGYLFG  +   KP                   D +   P  + ++ +
Sbjct: 4   ARGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTT 63

Query: 62  PSPSPSPKQLVS------NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 111
                  ++  +      NNY R+ GQN GNF+T+RPSTKV + PGG SSLGYLFG
Sbjct: 64  TGDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119

[Close]

BLAST of Lsi07G002760 vs. NCBI nr
Match: gi|659102268|ref|XP_008452039.1| (PREDICTED: protein SPIRAL1-like 5 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 94/113 (83.19%), Postives = 97/113 (85.84%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGGRSSLGYLFGKDDQP KPQV+KVVLPPPYGIDLNP D+ +NN         
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNN--------- 60

Query: 61  PSPSPSPKQLVS-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
             PSPSPKQLVS NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGDK
Sbjct: 61  --PSPSPKQLVSKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 102

[Close]

BLAST of Lsi07G002760 vs. NCBI nr
Match: gi|449457568|ref|XP_004146520.1| (PREDICTED: protein SPIRAL1-like 5 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.3e-42
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGGRSSLGYLFGKDDQP KPQV+KVVLPPPYGIDLNP D++NN          
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNN---------- 60

Query: 61  PSPSPSPKQLVS-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD 112
             PSPSPKQLVS NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGD
Sbjct: 61  --PSPSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100

[Close]

BLAST of Lsi07G002760 vs. NCBI nr
Match: gi|255537565|ref|XP_002509849.1| (PREDICTED: protein SPIRAL1-like 5 [Ricinus communis])

HSP 1 Score: 135.6 bits (340), Expect = 5.4e-29
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+ P  P  ++ V  PPYG+D+ P  N+ NN S       
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDENPTTPPPSQTVNLPPYGVDVIPEKNNPNNLS------- 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
                + K  VSNNY RA GQN+GNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  -----AEKGKVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100

[Close]

BLAST of Lsi07G002760 vs. NCBI nr
Match: gi|225426170|ref|XP_002278988.1| (PREDICTED: protein SPIRAL1-like 5 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+QP +P V+  +  PPYGID              P  P 
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDEQPSEPPVSPTIQLPPYGIDT------------IPEKPP 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
             P P+ KQ  SNNY R  GQN+GNFITDRPSTKV+SVPGGDSSLGYLFGDK
Sbjct: 61  NRPPPAEKQSSSNNYQRTQGQNTGNFITDRPSTKVRSVPGGDSSLGYLFGDK 100

[Close]

BLAST of Lsi07G002760 vs. NCBI nr
Match: gi|743825763|ref|XP_011022628.1| (PREDICTED: protein SPIRAL1-like 5 [Populus euphratica])

HSP 1 Score: 132.1 bits (331), Expect = 6.0e-28
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPIKPQVTKVVLPPPYGIDLNPHDNSNNNPSPSPSSPS 60
           MSRGGSYGGG+SSLGYLFG D+QP  P  ++ V  PPYG+D+                 S
Sbjct: 1   MSRGGSYGGGQSSLGYLFGSDEQPSAPPPSRPVNLPPYGVDIT-------------IEKS 60

Query: 61  PSPSPSPKQLVSNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 113
           P    S K+ VSNNY RA GQN+GNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  PDSGSSEKKQVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

The following BLAST results are available for this feature:

BLAST of Lsi07G002760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L5_ARATH	1.2e-23	54.31	Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1	[more]
SP1L1_ORYSJ	1.6e-17	47.24	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1	[more]
SP1L1_ARATH	2.6e-15	44.53	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	2.2e-14	46.15	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SPR1_ARATH	8.4e-14	45.60	Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1	[more]

BLAST of Lsi07G002760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUV0_CUCSA	3.0e-42	83.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047940 PE=4 SV=1	[more]
B9RCG5_RICCO	3.8e-29	64.29	SP1L, putative OS=Ricinus communis GN=RCOM_1688070 PE=4 SV=1	[more]
D7TV53_VITVI	6.5e-29	63.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00250 PE=4 SV=...	[more]
A9P913_POPTR	5.5e-28	63.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13150g PE=2 SV=1	[more]
A0A167V9C5_9ROSI	1.2e-27	63.39	SP1L1 OS=Salix matsudana PE=2 SV=1	[more]

BLAST of Lsi07G002760 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23496.1	6.6e-25	54.31	SPIRAL1-like5	[more]
AT1G26355.1	1.5e-16	44.53	SPIRAL1-like1	[more]
AT1G69230.1	1.2e-15	46.15	SPIRAL1-like2	[more]
AT2G03680.1	4.7e-15	45.60	spiral1	[more]
AT5G15600.1	4.2e-11	38.79	SPIRAL1-like4	[more]

BLAST of Lsi07G002760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102268\|ref\|XP_008452039.1\|	1.1e-42	83.19	PREDICTED: protein SPIRAL1-like 5 [Cucumis melo]	[more]
gi\|449457568\|ref\|XP_004146520.1\|	4.3e-42	83.04	PREDICTED: protein SPIRAL1-like 5 [Cucumis sativus]	[more]
gi\|255537565\|ref\|XP_002509849.1\|	5.4e-29	64.29	PREDICTED: protein SPIRAL1-like 5 [Ricinus communis]	[more]
gi\|225426170\|ref\|XP_002278988.1\|	9.3e-29	63.39	PREDICTED: protein SPIRAL1-like 5 [Vitis vinifera]	[more]
gi\|743825763\|ref\|XP_011022628.1\|	6.0e-28	63.39	PREDICTED: protein SPIRAL1-like 5 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G002760.1	Lsi07G002760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 1..112 score: 1.7
None	No IPR available	PANTHER	PTHR33403:SF2	PROTEIN SPIRAL1-LIKE 5	coord: 1..112 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G002760	Csa4G047940	Cucumber (Chinese Long) v2	culsiB303
Lsi07G002760	CSPI04G05730	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G002760	Cucsa.106750	Cucumber (Gy14) v1	cgylsiB140
Lsi07G002760	CmoCh04G007890	Cucurbita moschata (Rifu)	cmolsiB692
Lsi07G002760	Cla014619	Watermelon (97103) v1	lsiwmB439
Lsi07G002760	MELO3C016359	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G002760	ClCG07G008200	Watermelon (Charleston Gray)	lsiwcgB413
Lsi07G002760	MELO3C016359.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G002760	Cla97C07G135310	Watermelon (97103) v2	lsiwmbB412
Lsi07G002760	Bhi01G001816	Wax gourd	lsiwgoB555
Lsi07G002760	Cp4.1LG01g06660	Cucurbita pepo (Zucchini)	cpelsiB373
Lsi07G002760	CsGy4G005600	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G002760	Carg14137	Silver-seed gourd	carlsiB859
Lsi07G002760	CsaV3_4G005890	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G002760	Watermelon (97103) v2	lsiwmbB393
Lsi07G002760	Cucumber (Gy14) v1	cgylsiB444
Lsi07G002760	Cucurbita maxima (Rimu)	cmalsiB326
Lsi07G002760	Cucurbita maxima (Rimu)	cmalsiB329
Lsi07G002760	Cucurbita maxima (Rimu)	cmalsiB618
Lsi07G002760	Cucurbita maxima (Rimu)	cmalsiB698
Lsi07G002760	Cucurbita moschata (Rifu)	cmolsiB315
Lsi07G002760	Cucurbita pepo (Zucchini)	cpelsiB185
Lsi07G002760	Wild cucumber (PI 183967)	cpilsiB305
Lsi07G002760	Wild cucumber (PI 183967)	cpilsiB477
Lsi07G002760	Cucumber (Chinese Long) v2	culsiB305
Lsi07G002760	Cucumber (Chinese Long) v2	culsiB469
Lsi07G002760	Melon (DHL92) v3.5.1	lsimeB456
Lsi07G002760	Melon (DHL92) v3.5.1	lsimeB460
Lsi07G002760	Watermelon (Charleston Gray)	lsiwcgB414
Lsi07G002760	Watermelon (Charleston Gray)	lsiwcgB396
Lsi07G002760	Watermelon (97103) v1	lsiwmB448
Lsi07G002760	Watermelon (97103) v1	lsiwmB455
Lsi07G002760	Cucumber (Gy14) v2	cgyblsiB435
Lsi07G002760	Melon (DHL92) v3.6.1	lsimedB478
Lsi07G002760	Cucumber (Chinese Long) v3	cuclsiB499