Lsi07G002080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G002080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 2263794 .. 2264015 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAACATATGATGAGGGTGTTATGGGGCCGGACTCTCCATCTCTACCAGTTGCTCCAGCGCCAGATTCATCGTCTTCGTCGTCACCTCCACCGTCATTGTCGCCACCTTCTCCCGATCATGATTCCGACTCCGATTTCTCTCCTCCACCATCGCCAGAAAAAGATAGTTCCTCCCATAATTCCTCACCAACACCATCAGGTTCTGTTAAATTCTAA

mRNA sequence

ATGAGTTCAACATATGATGAGGGTGTTATGGGGCCGGACTCTCCATCTCTACCAGTTGCTCCAGCGCCAGATTCATCGTCTTCGTCGTCACCTCCACCGTCATTGTCGCCACCTTCTCCCGATCATGATTCCGACTCCGATTTCTCTCCTCCACCATCGCCAGAAAAAGATAGTTCCTCCCATAATTCCTCACCAACACCATCAGGTTCTGTTAAATTCTAA

Coding sequence (CDS)

ATGAGTTCAACATATGATGAGGGTGTTATGGGGCCGGACTCTCCATCTCTACCAGTTGCTCCAGCGCCAGATTCATCGTCTTCGTCGTCACCTCCACCGTCATTGTCGCCACCTTCTCCCGATCATGATTCCGACTCCGATTTCTCTCCTCCACCATCGCCAGAAAAAGATAGTTCCTCCCATAATTCCTCACCAACACCATCAGGTTCTGTTAAATTCTAA

Protein sequence

MSSTYDEGVMGPDSPSLPVAPAPDSSSSSSPPPSLSPPSPDHDSDSDFSPPPSPEKDSSSHNSSPTPSGSVKF
Homology
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BLAST of Lsi07G002080 vs. NCBI nr
Match: gi|659107553|ref|XP_008453734.1| (PREDICTED: proline-rich receptor-like protein kinase PERK4 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1 

Query: 1  MSSTYDEGVMGPDSPSLPVAPAPDSSSSSSP-------PPSLSPPSPDHDSDSDFSPPPS 60
          MSS+  E   GPDS S P AP+PDSSS SSP       PP  SPPSPD  ++SDFSPPPS
Sbjct: 1  MSSSDGESSPGPDSQSSPAAPSPDSSSPSSPDPPSQKSPPLPSPPSPD--ANSDFSPPPS 60

Query: 61 PEKDSSSHNSSPTPSGS 71
          PE D SS+NSSP P  S
Sbjct: 61 PENDGSSNNSSPPPPPS 75

The following BLAST results are available for this feature:
BLAST of Lsi07G002080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G002080 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi07G002080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G002080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107553|ref|XP_008453734.1|3.2e-0661.04PREDICTED: proline-rich receptor-like protein kinase PERK4 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G002080.1Lsi07G002080.1mRNA