Lsi07G001410 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G001410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	60S ribosomal protein L13
Location	chr07 : 1528985 .. 1531605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATAAATTAGGGTTCCGGCTAACGAGGATCTAGTGGCTGGAAGTCTGAGAGAGAGAGGTCACTCCGCCGCGTTGTAAGTTTTCACCGTCTTTCATATCTTCCGATCTCTAATCGCTTTGTACTCTTCTCTTTTTGATTGAAGGTTGTGATACCAATGGCTTCTCATCATTGTATTTTGGTTACAATGTACAATCTGAAAGTTTTGCTCTATATTCGGTTGTGTTTGTTTATCGTAATCTTTTATACGAGCGGCTGGTTTCTATATTGTTCCTTTTTAGTAGTTTCGCTGCAGTAATTGAATCGATTCTGCATTTGTTTTTTGTTTTAAAATTTTTTCTGGAGTTTCTGTTTGGGTTTTTGGATTACTACTTGTCTAGTTTTTCGAAGTTCTATACTTCTATCTGCCAGAGCGTTTGCGATTTGTGCTCTCTACTACTGTTTCTTGATAAGTTTATCTGTGATTTGCTGGAGTAGACAAGGTGGCTGGTTCTGTCTCATAATAATACGTTTGATTGAATTGCGATTCTTTTGTCCTCCCCCTTCCTAACGAGCAAATGGTTGAATGGTTAGTTTTTTTGTAGCTGTTGATTGGATTAAGTATCTTCGGCTGATTTGGCCTAATGATTCTGGTTTGAAGAAAATGCATTTATAGTGATTATTATGGATTTTATACTTGATTGTATGTATATTCCAAGCTGCTGGACTCCATTTGTTTTTGTTCTTTTTCTTGCAGCCTTATTTAGCTGTTGAGTTTCCTTTGTAGTGGCTGTTTTCATTGTTATGTTTACTCCTAACATTACGAAGTTGGAGAAAAAACTCATTTTTAAGTTAGTTACAATATGGTTAATCGAAGTTTAAGTTGAGTTGCTGGTAATTATTGGAAATGTAATATATTAACTCTCCTATCTTTTAATAATCGTGTCTATTGACGAATTGGGTTTTGTCATTACTACCTAGAGAAGATGATCTTGTATATGGTGTTTTTTTCCCTCTAAATTTATCGAGTCAAAATAGTTGGGTAGGATGGAATCGCTTGTGGTTCTTGTTTCTTCTCCTTCTTTCCTTCTAATTGAGTCTGTTTACTTCTGGTTTGTTAGAGGTAAAAAATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGGTAAGTGCTGTTTTTGTTTTATATTCTATCTTCTTGTGCTCTAGTTGGTGTCTGTTCATCACTGGAACTTAGAATATGCTTGAGATATGTAACTCTAACTATGAACTTGATGATTCTACGATCAGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGTATTCAGTTTTCTCCTCTATTTTTAGTTTCTTGCTTTCTTGGCCATCTTCCTGGCCCCTTTAGGGTCTTGGCAGTAGAGTTTTATAGTTGTGGATAAATGTCAATTGGTTTCTTGGTGTATATTGTAGTAAGATCTCTCACATCATGTTTTTCAGTTTGGATCTCAGCCTACATTAAATGAAACTTAATCTTCTACTTAGCTGAATATTTTATGTATCTAGATTCCGTTATCGGTCAGTTGGGAAGTTTCATTGTCTTTAAGAACTTTAGGTTATGATCATTTATACCCCATCTTAATTATCTAGTATCTGCTGCTCAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGTTAGTTCATCGAAAATAATAGAACTTGGTTGAATGTTATCAAGTACTTTTTATGTACTGGATGTATCATCTCAACATTTTGGCTGTATGAATGTTGTAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAGATTGCCAGAACAACTGCTTAGAGGTTGTTCTATTTACCGAATTTTGGTATTTATTTTTACAAGATTTTTGATTTGACATATCTTCTGGACTTAATTTGGTAGATGAAAGTTCTGAGTTCATGGATTCAAGGGTATTGACATTTGTTTTTGGACTTGTGGTTTATCGCATCCAAAATAGTTTTTTGCAATCTTTCCATTTGGTTTTAATAATTTAAATTTTATTTTGATGGTATGAAAATCAAATTAATCACTAAGTTGATTTTGAGTGTACGTACATGGTTTATGGTACTAATTTTAACAATTTAAAAATTACTTTTATCGGCTTCTGAGAAATTATCATTCAGT

mRNA sequence

TACAAATAAATTAGGGTTCCGGCTAACGAGGATCTAGTGGCTGGAAGTCTGAGAGAGAGAGGTCACTCCGCCGCGTTAGGTAAAAAATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAGATTGCCAGAACAACTGCTTAGAGGTTGTTCTATTTACCGAATTTTGGTATTTATTTTTACAAGATTTTTGATTTGACATATCTTCTGGACTTAATTTGGTAGATGAAAGTTCTGAGTTCATGGATTCAAGGGTATTGACATTTGTTTTTGGACTTGTGGTTTATCGCATCCAAAATAGTTTTTTGCAATCTTTCCATTTGGTTTTAATAATTTAAATTTTATTTTGATGGTATGAAAATCAAATTAATCACTAAGTTGATTTTGAGTGTACGTACATGGTTTATGGTACTAATTTTAACAATTTAAAAATTACTTTTATCGGCTTCTGAGAAATTATCATTCAGT

Coding sequence (CDS)

ATGAAGCACAACAATGTTATCCCTAGCGGTCACTTCAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGAAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTCCCCCGCCCAACTGCTGGACCACTCCGTCCCATTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGTAGGGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACCATTGGAATATCAGTTGACCATCGCCGTAGGAACCGCTCCCTTGAAAGTCTACAGACTAATGTGCAGAGGCTGAAGACATACAAGGCCAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTTAAGGCTGGTGATTCTACTCCAGAGGAGCTCGCAAATGCCACCCAAGTCCAAGGACCATACCTACCTATTGGGCGTGAGAAGGCAGCAGTTGAGCTTGTGAAGGTCACTGAGGACATGAAATCGTTTAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTCGGAGCTAGATTGAAGAAGGCAGCAGAGGCCGAGAAGGAAGATAAGAAGTAG

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKAKVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKLRVERTNARHVGARLKKAAEAEKEDKK

Homology

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BLAST of Lsi07G001410 vs. Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-95
Identity = 173/206 (83.98%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELANATQVQG Y+PI   KAA+ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTNARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

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BLAST of Lsi07G001410 vs. Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-95
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

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BLAST of Lsi07G001410 vs. Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.2e-94
Identity = 170/206 (82.52%), Postives = 191/206 (92.72%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIS+DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELANATQVQG Y+PI REK A+ELVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-93
Identity = 169/206 (82.04%), Postives = 191/206 (92.72%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKKLAPTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELANATQVQG Y+PI REK A ELVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.0e-82
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKKLAPTIGISVDH R+NRSLE  QTNVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELANATQVQ  ++PI RE   +ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+E  N RH G R K+AAEAEKE+KK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

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BLAST of Lsi07G001410 vs. TrEMBL
Match: A0A0A0KU76_CUCSA (60S ribosomal protein L13 OS=Cucumis sativus GN=Csa_4G025200 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.4e-108
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVERTNARHVGARLK+AAEAEKEDKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

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BLAST of Lsi07G001410 vs. TrEMBL
Match: A0A0A0KKX2_CUCSA (60S ribosomal protein L13 OS=Cucumis sativus GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 9.5e-103
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKK APTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELA ATQVQG Y+PIG EK +VELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TrEMBL
Match: V7CMM3_PHAVU (60S ribosomal protein L13 OS=Phaseolus vulgaris GN=PHAVU_002G127900g PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.2e-99
Identity = 187/206 (90.78%), Postives = 197/206 (95.63%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           +KHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQ 61

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLES+Q+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKA 121

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRRARK KAGDSTPEELANATQVQG YLPI REKA VELVK+T+DMK+FKAY KL
Sbjct: 122 KLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKL 181

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GARLKKAAEAEKEDKK
Sbjct: 182 RLERTNKRHFGARLKKAAEAEKEDKK 207

[Close]

BLAST of Lsi07G001410 vs. TrEMBL
Match: T2DN44_PHAVU (60S ribosomal protein L13 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 8.3e-99
Identity = 186/206 (90.29%), Postives = 196/206 (95.15%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           +KHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQ 61

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLES+Q+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKA 121

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRRARK KAGDSTPEELANATQVQG YLPI REKA VELVK+T+DMK+FKAY KL
Sbjct: 122 KLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKL 181

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GARLK AAEAEKEDKK
Sbjct: 182 RLERTNKRHFGARLKNAAEAEKEDKK 207

[Close]

BLAST of Lsi07G001410 vs. TrEMBL
Match: A0A0L9URS6_PHAAN (60S ribosomal protein L13 OS=Phaseolus angularis GN=LR48_Vigan06g072700 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 188/206 (91.26%), Postives = 196/206 (95.15%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           +KHNNVIPSGHFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRPIVHGQ
Sbjct: 2   VKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQ 61

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRR+NRSLESLQTNVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQTNVQRLKTYKA 121

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRRARK KAGDST EELANATQVQG YLPI REK AVELVKVT+DMK+FKAY KL
Sbjct: 122 KLVVFPRRARKVKAGDSTSEELANATQVQGSYLPIAREKPAVELVKVTDDMKAFKAYYKL 181

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GARLKKAAEAEKEDKK
Sbjct: 182 RLERTNKRHYGARLKKAAEAEKEDKK 207

[Close]

BLAST of Lsi07G001410 vs. TAIR10
Match: AT3G49010.1 (AT3G49010.1 breast basic conserved 1)

HSP 1 Score: 350.5 bits (898), Expect = 7.0e-97
Identity = 172/206 (83.50%), Postives = 192/206 (93.20%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQTNVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK  +ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR10
Match: AT5G23900.1 (AT5G23900.1 Ribosomal protein L13e family protein)

HSP 1 Score: 350.5 bits (898), Expect = 7.0e-97
Identity = 173/206 (83.98%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELANATQVQG Y+PI   KAA+ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTNARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. TAIR10
Match: AT3G48960.1 (AT3G48960.1 Ribosomal protein L13e family protein)

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-83
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKKLAPTIGISVDH R+NRSLE  QTNVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELANATQVQ  ++PI RE   +ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+E  N RH G R K+AAEAEKE+KK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: gi|778690354|ref|XP_011653106.1| (PREDICTED: 60S ribosomal protein L13-3 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 6.3e-108
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVERTNARHVGARLK+AAEAEKEDKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: gi|659107743|ref|XP_008453835.1| (PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKA+VELVKVTEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKEDKK
Sbjct: 181 RVERMNARHVGARLKKAAEAEKEDKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: gi|659073228|ref|XP_008467320.1| (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 194/206 (94.17%), Postives = 198/206 (96.12%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKK APTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELA ATQVQG Y+PIG EK +VELVKVTEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: gi|449451838|ref|XP_004143667.1| (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKK APTIGI+VDHRRRNRSLESLQ NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELA ATQVQG Y+PIG EK +VELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           RVER NARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Lsi07G001410 vs. NCBI nr
Match: gi|593790206|ref|XP_007158142.1| (hypothetical protein PHAVU_002G127900g [Phaseolus vulgaris])

HSP 1 Score: 369.8 bits (948), Expect = 3.1e-99
Identity = 187/206 (90.78%), Postives = 197/206 (95.63%), Query Frame = 1


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           +KHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQ 61

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQTNVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLES+Q+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKA 121

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAAVELVKVTEDMKSFKAYDKL 180
           K+VVFPRRARK KAGDSTPEELANATQVQG YLPI REKA VELVK+T+DMK+FKAY KL
Sbjct: 122 KLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKL 181

Query: 181 RVERTNARHVGARLKKAAEAEKEDKK 207
           R+ERTN RH GARLKKAAEAEKEDKK
Sbjct: 182 RLERTNKRHFGARLKKAAEAEKEDKK 207

The following BLAST results are available for this feature:

BLAST of Lsi07G001410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL133_ARATH	1.2e-95	83.98	60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1	[more]
RL131_ARATH	1.2e-95	83.50	60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1	[more]
RL132_BRANA	5.2e-94	82.52	60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1	[more]
RL131_BRANA	2.0e-93	82.04	60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1	[more]
RL132_ARATH	6.0e-82	74.76	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1	[more]

BLAST of Lsi07G001410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU76_CUCSA	4.4e-108	97.57	60S ribosomal protein L13 OS=Cucumis sativus GN=Csa_4G025200 PE=3 SV=1	[more]
A0A0A0KKX2_CUCSA	9.5e-103	93.69	60S ribosomal protein L13 OS=Cucumis sativus GN=Csa_5G168780 PE=3 SV=1	[more]
V7CMM3_PHAVU	2.2e-99	90.78	60S ribosomal protein L13 OS=Phaseolus vulgaris GN=PHAVU_002G127900g PE=3 SV=1	[more]
T2DN44_PHAVU	8.3e-99	90.29	60S ribosomal protein L13 OS=Phaseolus vulgaris PE=2 SV=1	[more]
A0A0L9URS6_PHAAN	1.1e-98	91.26	60S ribosomal protein L13 OS=Phaseolus angularis GN=LR48_Vigan06g072700 PE=3 SV=...	[more]

BLAST of Lsi07G001410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49010.1	7.0e-97	83.50	breast basic conserved 1	[more]
AT5G23900.1	7.0e-97	83.98	Ribosomal protein L13e family protein	[more]
AT3G48960.1	3.4e-83	74.76	Ribosomal protein L13e family protein	[more]

BLAST of Lsi07G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690354\|ref\|XP_011653106.1\|	6.3e-108	97.57	PREDICTED: 60S ribosomal protein L13-3 [Cucumis sativus]	[more]
gi\|659107743\|ref\|XP_008453835.1\|	1.1e-107	97.57	PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo]	[more]
gi\|659073228\|ref\|XP_008467320.1\|	1.0e-102	94.17	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
gi\|449451838\|ref\|XP_004143667.1\|	1.4e-102	93.69	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis sativus]	[more]
gi\|593790206\|ref\|XP_007158142.1\|	3.1e-99	90.78	hypothetical protein PHAVU_002G127900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018256	Ribosomal_L13e_CS
IPR001380	Ribosomal_L13e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001410.1	Lsi07G001410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 1..206 score: 4.7E
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..184 score: 5.5
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83 scor
None	No IPR available	unknown	Coil	Coil	coord: 195..206 scor
None	No IPR available	PANTHER	PTHR11722:SF1	SUBFAMILY NOT NAMED	coord: 1..206 score: 4.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G001410	Csa4G025200	Cucumber (Chinese Long) v2	culsiB303
Lsi07G001410	CSPI04G04350	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G001410	Cucsa.093890	Cucumber (Gy14) v1	cgylsiB115
Lsi07G001410	CmaCh16G002330	Cucurbita maxima (Rimu)	cmalsiB323
Lsi07G001410	CmaCh04G003760	Cucurbita maxima (Rimu)	cmalsiB696
Lsi07G001410	CmoCh04G003980	Cucurbita moschata (Rifu)	cmolsiB690
Lsi07G001410	CmoCh16G002520	Cucurbita moschata (Rifu)	cmolsiB312
Lsi07G001410	Cla010689	Watermelon (97103) v1	lsiwmB441
Lsi07G001410	MELO3C017622	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G001410	MELO3C005446	Melon (DHL92) v3.5.1	lsimeB428
Lsi07G001410	ClCG07G017240	Watermelon (Charleston Gray)	lsiwcgB407
Lsi07G001410	MELO3C017622.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G001410	Cla97C07G144260	Watermelon (97103) v2	lsiwmbB406
Lsi07G001410	Bhi01G001982	Wax gourd	lsiwgoB555
Lsi07G001410	Cp4.1LG01g03310	Cucurbita pepo (Zucchini)	cpelsiB374
Lsi07G001410	Cp4.1LG14g05240	Cucurbita pepo (Zucchini)	cpelsiB182
Lsi07G001410	CsGy4G004260	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G001410	Carg08051	Silver-seed gourd	carlsiB347
Lsi07G001410	Carg16775	Silver-seed gourd	carlsiB792
Lsi07G001410	CsaV3_4G004440	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G001410	Silver-seed gourd	carlsiB653
Lsi07G001410	Cucumber (Chinese Long) v3	cuclsiB408
Lsi07G001410	Cucumber (Chinese Long) v3	cuclsiB497
Lsi07G001410	Watermelon (97103) v2	lsiwmbB389
Lsi07G001410	Watermelon (97103) v2	lsiwmbB390
Lsi07G001410	Wax gourd	lsiwgoB571
Lsi07G001410	Bottle gourd (USVL1VR-Ls)	lsilsiB018
Lsi07G001410	Bottle gourd (USVL1VR-Ls)	lsilsiB083
Lsi07G001410	Cucurbita maxima (Rimu)	cmalsiB590
Lsi07G001410	Cucurbita moschata (Rifu)	cmolsiB573
Lsi07G001410	Wild cucumber (PI 183967)	cpilsiB389
Lsi07G001410	Cucumber (Chinese Long) v2	culsiB385
Lsi07G001410	Watermelon (Charleston Gray)	lsiwcgB393
Lsi07G001410	Watermelon (97103) v1	lsiwmB452