Lsi07G000810 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G000810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 877342 .. 877521 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCAGACACAGTCCGGTAAACGCGTATCCAGCATATGCAACAATATCAAGTAACGGTGCCTCCCCACTTCCCAACGATAATAGCGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAGTAAACCTACAATGA

mRNA sequence

ATGGCAGCCAGACACAGTCCGGTAAACGCGTATCCAGCATATGCAACAATATCAAGTAACGGTGCCTCCCCACTTCCCAACGATAATAGCGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAGTAAACCTACAATGA

Coding sequence (CDS)

ATGGCAGCCAGACACAGTCCGGTAAACGCGTATCCAGCATATGCAACAATATCAAGTAACGGTGCCTCCCCACTTCCCAACGATAATAGCGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAGTAAACCTACAATGA

Protein sequence

MAARHSPVNAYPAYATISSNGASPLPNDNSVTLSSMTCINQPSNPLMNNQLKASGVNLQ
Homology
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BLAST of Lsi07G000810 vs. NCBI nr
Match: gi|297736318|emb|CBI24956.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-06
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 7  PVNAYPAYATISSNGASPLPNDNSVTLSSMTCINQPSNPLMNNQLKASGVNL 59
          P  +   YAT+S  GASPL N+++ T SS TC NQP+NPLMN+Q +ASG+NL
Sbjct: 14 PCESVRCYATMSRKGASPLSNESNDTFSSETCKNQPTNPLMNSQFRASGLNL 65

The following BLAST results are available for this feature:
BLAST of Lsi07G000810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G000810 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi07G000810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G000810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297736318|emb|CBI24956.3|2.0e-0657.69unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G000810.1Lsi07G000810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G000810Cucsa.094460Cucumber (Gy14) v1cgylsiB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G000810Cucurbita maxima (Rimu)cmalsiB254
Lsi07G000810Cucurbita maxima (Rimu)cmalsiB777
Lsi07G000810Cucurbita moschata (Rifu)cmolsiB242
Lsi07G000810Cucurbita moschata (Rifu)cmolsiB768
Lsi07G000810Cucurbita pepo (Zucchini)cpelsiB513
Lsi07G000810Cucurbita pepo (Zucchini)cpelsiB723
Lsi07G000810Wild cucumber (PI 183967)cpilsiB303
Lsi07G000810Cucumber (Chinese Long) v2culsiB303
Lsi07G000810Melon (DHL92) v3.5.1lsimeB454
Lsi07G000810Watermelon (Charleston Gray)lsiwcgB407
Lsi07G000810Watermelon (97103) v1lsiwmB441
Lsi07G000810Cucumber (Gy14) v2cgyblsiB277
Lsi07G000810Melon (DHL92) v3.6.1lsimedB471
Lsi07G000810Silver-seed gourdcarlsiB172
Lsi07G000810Silver-seed gourdcarlsiB634
Lsi07G000810Cucumber (Chinese Long) v3cuclsiB322
Lsi07G000810Watermelon (97103) v2lsiwmbB406
Lsi07G000810Wax gourdlsiwgoB559