Lsi06G016300 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G016300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 26599839 .. 26600585 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATACCGCAAGAGGCATTCCTATAAAAAGCGCATCCGAGCAGCTGAGTAAAGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGGTTTCTCTTTGGGGAAGCTCCTGCAGTTGAAGTACAAATGATTAATTAGCCCTTGAAATTGTACAATTGATAATTATTTGCTTAAGTTTTTTTCTCATATTTTTAGTAACATGTATATCAATACCTATGGTTATCGTGAATTATTTATGTTTCATTTTCAGATGATCGATTGGCTGTCATCTCTCAGTGCCCTATATTTTAGTGGGAAATCGTAAAAGCACACTTGGCCTTAAACTTGGAGCCTGCTGTAATATTTGGTTTTAACCATTTTATAATAGAAGGTGATTGCCACTGCCCTTGAAAGCAACATGTCGTAGGTAGATGTAAGGCTGGCTTAATTTAGATACCAGCAAAAATGTGCCATTGAAATTGTAAAAACATTTGTAATCTGTGTGAGAGTTAATGCTTGATTGGTATAAAAAAAATGAAACAGGGGTTGTGAGACTGAGCGAGCTAAGCAAAAAGGCAACAGCCAAGTGGGGGTAGAAGCTTGAAAGTATTATCTACTGAAAGAACTATGTGGGAGATGCTTTTTATAAGGATTTTGATTCGATGATCCTAAGTTTCTCAACACAGTTTTAATTTTCAAAGT

mRNA sequence

TATACCGCAAGAGGCATTCCTATAAAAAGCGCATCCGAGCAGCTGAGTAAAGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGGTTTCTCTTTGGGGAAGCTCCTGCAGTTGAAATGATCGATTGGCTGTCATCTCTCAGTGCCCTATATTTTAGTGGGAAATCGTAAAAGCACACTTGGCCTTAAACTTGGAGCCTGCTGTAATATTTGGTTTTAACCATTTTATAATAGAAGGTGATTGCCACTGCCCTTGAAAGCAACATGTCGTAGGTAGATGTAAGGCTGGCTTAATTTAGATACCAGCAAAAATGTGCCATTGAAATTGTAAAAACATTTGTAATCTGTGTGAGAGTTAATGCTTGATTGGTATAAAAAAAATGAAACAGGGGTTGTGAGACTGAGCGAGCTAAGCAAAAAGGCAACAGCCAAGTGGGGGTAGAAGCTTGAAAGTATTATCTACTGAAAGAACTATGTGGGAGATGCTTTTTATAAGGATTTTGATTCGATGATCCTAAGTTTCTCAACACAGTTTTAATTTTCAAAGT

Coding sequence (CDS)

TATACCGCAAGAGGCATTCCTATAAAAAGCGCATCCGAGCAGCTGAGTAAAGCACGGAGCCGTGCGGTGAGCACAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCTCATAGCGGCATACGCCTATTTTTGGAGGGGTTTCTCTTTGGGGAAGCTCCTGCAGTTGAAATGATCGATTGGCTGTCATCTCTCAGTGCCCTATATTTTAGTGGGAAATCGTAA

Protein sequence

YTARGIPIKSASEQLSKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEGFLFGEAPAVEMIDWLSSLSALYFSGKS
Homology
[Close]
BLAST of Lsi06G016300 vs. TrEMBL
Match: A0A0D2UXN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-10
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 14 QLSKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG-FLFGEAPA 61
          QL K+RSRAVSTERTILSPFTKEYRVLAA+SGIRLFLE  FLF   P+
Sbjct: 51 QLVKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLFRNGPS 98

[Close]
BLAST of Lsi06G016300 vs. TrEMBL
Match: A5AF12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-08
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 16 SKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 53
          SK+RSRAVST+RTILSPFTKEYRV AA SGIRLFLEG
Sbjct: 13 SKSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLEG 49

[Close]
BLAST of Lsi06G016300 vs. NCBI nr
Match: gi|763806751|gb|KJB73689.1| (hypothetical protein B456_011G243800 [Gossypium raimondii])

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-10
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 14 QLSKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG-FLFGEAPA 61
          QL K+RSRAVSTERTILSPFTKEYRVLAA+SGIRLFLE  FLF   P+
Sbjct: 51 QLVKSRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLEAYFLFRNGPS 98

[Close]
BLAST of Lsi06G016300 vs. NCBI nr
Match: gi|147817638|emb|CAN64497.1| (hypothetical protein VITISV_004037 [Vitis vinifera])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 16 SKARSRAVSTERTILSPFTKEYRVLAAHSGIRLFLEG 53
          SK+RSRAVST+RTILSPFTKEYRV AA SGIRLFLEG
Sbjct: 13 SKSRSRAVSTKRTILSPFTKEYRVRAASSGIRLFLEG 49

The following BLAST results are available for this feature:
BLAST of Lsi06G016300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G016300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2UXN6_GOSRA4.7e-1081.25Uncharacterized protein OS=Gossypium raimondii GN=B456_011G243800 PE=4 SV=1[more]
A5AF12_VITVI9.9e-0889.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004037 PE=4 SV=1[more]
BLAST of Lsi06G016300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G016300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763806751|gb|KJB73689.1|6.8e-1081.25hypothetical protein B456_011G243800 [Gossypium raimondii][more]
gi|147817638|emb|CAN64497.1|1.4e-0789.19hypothetical protein VITISV_004037 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G016300.1Lsi06G016300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 8..28
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G016300MELO3C026226Melon (DHL92) v3.5.1lsimeB407
Lsi06G016300MELO3C026226.2Melon (DHL92) v3.6.1lsimedB429
Lsi06G016300Cla97C06G127470Watermelon (97103) v2lsiwmbB374
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G016300Silver-seed gourdcarlsiB331
Lsi06G016300Silver-seed gourdcarlsiB335
Lsi06G016300Silver-seed gourdcarlsiB397
Lsi06G016300Silver-seed gourdcarlsiB955
Lsi06G016300Cucumber (Chinese Long) v3cuclsiB077
Lsi06G016300Cucumber (Chinese Long) v3cuclsiB081
Lsi06G016300Cucumber (Chinese Long) v3cuclsiB247
Lsi06G016300Watermelon (97103) v2lsiwmbB364
Lsi06G016300Watermelon (97103) v2lsiwmbB371
Lsi06G016300Wax gourdlsiwgoB483
Lsi06G016300Wax gourdlsiwgoB526
Lsi06G016300Bottle gourd (USVL1VR-Ls)lsilsiB111
Lsi06G016300Cucumber (Gy14) v1cgylsiB250
Lsi06G016300Cucurbita maxima (Rimu)cmalsiB072
Lsi06G016300Cucurbita maxima (Rimu)cmalsiB135
Lsi06G016300Cucurbita maxima (Rimu)cmalsiB144
Lsi06G016300Cucurbita maxima (Rimu)cmalsiB219
Lsi06G016300Cucurbita maxima (Rimu)cmalsiB251
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB058
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB128
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB133
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB207
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB239
Lsi06G016300Cucurbita moschata (Rifu)cmolsiB376
Lsi06G016300Cucurbita pepo (Zucchini)cpelsiB298
Lsi06G016300Cucurbita pepo (Zucchini)cpelsiB433
Lsi06G016300Cucurbita pepo (Zucchini)cpelsiB556
Lsi06G016300Cucurbita pepo (Zucchini)cpelsiB569
Lsi06G016300Wild cucumber (PI 183967)cpilsiB068
Lsi06G016300Wild cucumber (PI 183967)cpilsiB070
Lsi06G016300Wild cucumber (PI 183967)cpilsiB224
Lsi06G016300Cucumber (Chinese Long) v2culsiB067
Lsi06G016300Cucumber (Chinese Long) v2culsiB070
Lsi06G016300Cucumber (Chinese Long) v2culsiB225
Lsi06G016300Melon (DHL92) v3.5.1lsimeB392
Lsi06G016300Melon (DHL92) v3.5.1lsimeB397
Lsi06G016300Melon (DHL92) v3.5.1lsimeB421
Lsi06G016300Watermelon (Charleston Gray)lsiwcgB363
Lsi06G016300Watermelon (Charleston Gray)lsiwcgB369
Lsi06G016300Watermelon (Charleston Gray)lsiwcgB372
Lsi06G016300Watermelon (97103) v1lsiwmB394
Lsi06G016300Watermelon (97103) v1lsiwmB414
Lsi06G016300Cucumber (Gy14) v2cgyblsiB064
Lsi06G016300Cucumber (Gy14) v2cgyblsiB067
Lsi06G016300Cucumber (Gy14) v2cgyblsiB214
Lsi06G016300Melon (DHL92) v3.6.1lsimedB414
Lsi06G016300Melon (DHL92) v3.6.1lsimedB419