Lsi06G015550 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G015550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSerine/threonine-protein kinase ATM
Locationchr06 : 25949986 .. 25959321 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGACGAACTCTCCAAGCTGGCTAGTCATTCAAAGAGCTTGACGTTACTGATGACTTGGACCCAGTTCAACAAGGTTCTTAGCAAGTAAAGAAGCTTAAGCTTCTGCTTGTGAATATTAGGGCAACGTCAGGCCCATACTGAGTTATTTTTTTATCAACTTTTATGAAATACCTGTCTTCAGAAGAAAATGAAAAATACACGGGCTTAATGTTTCTCGTCTTAATTTTTCTCAAATATTGTTGAAGACAATCTGATCAGTCAATTAAGTAATGCTAATTTTTAATTGCAGAACTTGGTTCAGATTGGAAAAGTAGTGAACAGGATTGCTGAAACTGACCTTCTTGACTGGTTGGGGCGTGTTAAGCTTATTGATTGCATTTGTGACTTTATTTTAATCAATCCAGAAATTGGGCAGGTAATCATTTTGATGCATGAGAATACATATCCTTATTTTTTATATTCCTAGCAAATTACTAGATGCCTGAACACTTTATTGAGTTCTTTCTCATTATACTACAAAATAATAGAATACAAAGAAAGGTCTGACGCCAACTTTTCAAAATGTACCAACACAAACCTAGCCTTTTCAATGTGTTTCTTTTGTTCAAATTGTATCAGGGGAGTTACTTGGTAGGGATGTTAGATTTTCTTGATATTTGATTATTTCTTTGTTGGAAATGATGAGAGTGCTAAGGGGGTGTCATCATAGTTGAGATGTCCGGGTGCACTTCTTTATCCACAAGATCTTTTGTTCTATGTATCTCTATTATGTACTTTGAGCATTAGTCTCATTTTATTAATTCAATGAAGAGGCTGTTTCTTTTTTCAAAAAAAACTTTATCCTCCCAGTTCTTTACTTTCTAATTCTGCTGTTCCAACCATTATTCATTCAGGCCTTTTCATTTCATCAATGAAAAATATTGTTTTTGTTTAAAAAAAAAACCATTATTCCTTCAGGCGACAACATGGGCTTTACTAGGTTTTCCCAAGCTTTTTCCTGCTTGTAAATTTTATTTATTGTCTTCTCTTTCAATCTCGCTCCTTTTTTTTTTTTTTTTTTTTTTTTTAACACTTCCATTCTTGCACACTGAACTGTATTTCCTAACAATTGATGTTATGATGGGATCTATCTAGACAATGATTGAAAGGTTATTTGTAATGCTGCGGGATCCTGAATATCGAGTTAGGTATTTCCTGGCGAAACGAATAGGCGTTCTCTTCCAGACATGGGATGGCCATGAGGAACTTTTCCAGGATATATGGTGGGTTTTTTTTGTTAATTTTTAAAATTATATTAATTCTTTTCGTCTATCAGTATTCTTCGTCTTTTATTGTGTTATCATGGTAAAAATATTTAAATAGCTCTATATTCATTCTTTTCATACTGGAAATTATTGATTGGATTTGAAACATTAAGCGGTAGAAAATTTGTGGATGTTCTGATGAAAAATTTAAAATGAGCCAGATTTTCAATATAGAAGAAAGATACTCCAATATTATTAGATAAAAGTGGCATCAGAAAATATTATTCACATCTAAACCTTTGAAAGAAGAATGAGATGATAACAGGGATTTTATAGGTCTTTCATATGAAGAAAGGATGTGTGAGAGGGATACAATAGGAAATTTTAGGAGTTGGTTAATGCTAGTAAAGGCATCAGATTCTTTAGGAAGTCGATCTTAAAAGTGATGGTTAATTATATTTTGCAAACTAATGTAATTGAACAAAGATTTTCTTTAATTAATTTATAATCAGGTTTACCAAACACTGAAAAGTAAAAACAGTTAAGCTCCTCTCTAAATCACTTTTAATATCTGCAAACACAATCCCAAATGCAGCCTTATTGCACTTTTCTAAAGAATTGTTACTTTTCACTTGTGTTGGGAATTGAGTGATGCCCCTTCCAAAGAGGGTTGGATCAGAGGCTTGACTCTTATCACGGACTGTATATTGTCTATTAAATCTTGTATATTGCCTTCATTTTTTCATTTTCCAACATCATTGAAGTCCTTATGCGTTGATACTGAATAATTTGTATTCCTTAAATCCAGTTCCAGTTTTGGTGTTTCATTGGTGTTGTGCTCAAAACAAAAAGTTGTTACAGCAAGGGAAGTCCTAGATGCTGGTGTGCAGCTTCGTCCTACAATGGAAACCATAATTATCACACTTGGACATCTTGCTTTGCATAGTGATGCGATAGAGATGGAGGCAAGTGTTTGTTTAAATAGTTTTGTCAAATAAACGGAGTTGGTGGTATTTTCTTACTGTATATCTCTTGAAAGATCACAACAAGAGTGCCGTTAGACAGCATGTTCTTTGTTTATGGATTGAGCCTCATCATACCGATCAGTTTCTCTTCATATATATCACTTATTTTTTGAATTTTATAGCTTTCAGTTTTGTGTTGGAAAGAAATAGACGAACCTTTTCCAACTTATGCATAGGTCACGTTAAGGCACATATTCTTTACCATGAGATATGTTGATGCACTTAAAAAGAAAAAAGAAAAGAAAAACAGGATTTCAGTGAACTCCTGGAAAAACAGGATATTGTTGGTTTTTGGGTTTATCTCCTTATTGGGTTCTTCCCTTTTGTACTCTTTGGATATTTCATTCATCAATGAAATTGTTTCTTATCCAAAAAAATAAAAAATAAAAAATAAACTTCTGGAAATATTAGGTTTTTTCTTGTGTGTTCAGTATAGTACTTTAATCTTTACTTATGGTTGATTTTTAAATTGAAAATCTTTATTTCGTCATTTTCCATGTCTATTTGTATTCTACATGGAAAATATTTGTATTCTCTTCAAGTTACTTTGTTTGTTGACAATCTTGGCCTCTTGGGGCAGCTAAGGACGGGATATCATCCAAATGGATAGAAAAAACCCTTTTAGATTCATCCTTTATTTCAATAACAGCTTGAACAAAACCACAAACATTTTGTTCAACTTGAATAATGGCAGAAGAAAAGTCCGGGTTGATATTAATTATTCTTTTTAAGTAAGGAGTATGACAAAGTACTAAGCTGGTCTTCCAATTAATCTACAGTTTCATTATTTGATTTTTGTTGGAATTTCTAATAATGAATTTTTGTAAATATTAATTGTCAAATATTTAGTATTATTGTCTTATTTTTTTTTCATATTTGTAATAGGTCTTTCTCCTATATAAGAAGACCTGCATATATTCTATAGGATACTTTATCCAACTAAATTCTATAGTTTTACATTTTTAATAAAGAAATTAGCAAAGCACTCTTTCTAGTAGCTTTTTGACTCGTTAATTTGATATTTTATGGGCTTGCTTTTGTACTCCCTTGTTCATTCTCTCATTTTTCTCCATGAAAGCTCCGTTTCTGTTTTTCTTTATTGGTATTATATTGAACTGCAGGTGGTTTTCATGATGTGTGCAATCTCGGCCATTGATCCTAGTCAAAGGTGCTTGATCTAACTTGTTCTAAACATGCTATTTATTGTGGTTTATATTTTTCAGTTAATAGTTTCTTTGTTTTTTTTCAGGGAATTGGTCTCTGCTGTGCTTGATAACCTGGCCAGAGAGCTCAATTATTCAGGAAGACAGAAGGTGAAATTTATAGCTGAGACCTTTGCGTTTAAATTTTTTGACACATTATATTGATAACTTTTTCGACCGGTTCTTTTTAAATCTTGCTTTTGTAATATTTTATTTCTTTAGTTACCGTTGGTAACCACTAGTCCTTCGGTTGTTAACAAGTTTAGTATTTAGGCTAAACTTTTCAAACAGTTTAATACAACTATTGAAGTAGTTCTTAGAATTCAGAATTCTCTCCCAACTTGTCTCATCACTTATCACTTTCTTTGTTCCAAGGTTTGTTACCATGGAATTGGGAATAACCCATTTATGGGAATTTCCTGTGCCCGTGAAAGAGGATATCTCATATCCTCACAAATGTGATGTTGATAGTTATGTGTTTTGGAGGGTATTTAAGTACTTTCTCTTTTTTATTTGTCAGATTTTGAGTTGTTTATTAGTTGGGATTGTTTGTTGCTGGTTAGTTTTTGTTCTTTAATTTTTAGGCATTATTACCGGTTTTCCTATTAAAATATTAATATATTAAACAGGTAATTTCTATATAAAATGATATTTTAATATTAATATAATTAATTATTCAATTGTATTAAATATTAGGTGGTTCACAAATAGATTTACTATATTGAAGGGAAAATTACCTTTTTGGTCATCGAGTTTTTAATGATAGGTTTGTTTGGTTCTAAAGATCTCAAATGTACACTTTGAGGAGTTTTCAGTAATAGGTTTGTTTTGTCCATGATTATTTTTTTACACTTGTTAGAGTAACGAGATAATATTTTTTTTATTATTTTAATGCTGATGTGGAAAATTTTAAAAAACAAATAAAAAGCCACTTTTTCCTCTCTCCCTCCCCATGCCCACCCCCTCTTCGCTCACCTCCATCTTGGCCCTGGCACTTCCCCGCCAATGCTGACGCCTCCTCCTCTCCTTTTCCATCTCCTTATCCTTGTCTTCTCCTCTCACTTACCTTATGCCCTTGCCTCCTTCCTATACATTCAGCTCCTGCGTCAGCATTGGTGGAGAAAAAGGAGAAAGAAGAGGCATGGGGAGGAGTGGGGAGGAAGAGGAGGAGGTGCAGGAGTGAGTGGGAGGAGAGGAATGGAGAGAGGGGGGTTTTGTTTTAATTAATTTTTAATTTTATGATTCTCCACATCAACATTAAAAATAATAAAAAAATTACTTTTTCTTTTTAGAAGAAATTTTTTATTGATGTAAAAAATTTACAAAAAAGGACGAAGAGAAGGTTCGAATAAGGAGTTACAAAAGACATCTCCAAGTCGGCAGAAGATACGAAAGACTATATGAAAAGAGAAGAGAATTCAATTTACACCAATTAAAGCAAGATGTGCAACATTGTCAAACAAAACCGGACAATCTTTTTTCTTTGTATTAAATGTCCTTTATTCCTTCCAACCAAATTGACCACAAAAAGGCACGAACAAAATTCTTTCAAAGAAGCTCTTTCTTGTCCTTAAACAGGTGGCCCAAGAGGAGGAGATTAAGCAAAGTGAATGTACCCTGATGGAGGGCCAATAACCAACTGAAGGCACCTTGTAAATTAGTTCAAAATTGTTGAGCAAGTGGCAGTGTATAAAAATGTGTGGTTGGGTCTCCAAGCTGTTTATACAAAGTGAACACAGGAGAAAGGACCATGTAGGGAAGGCGCCTTTCAAGTCTATCATGTGTGTTTATGCCTCCATGAGAGAGCTCCCAAATGAAGAATTTGATGTTGTTTGTGTATTCATCATTCCAAATCCCCTTTGTGTAGAGGTAGGAGTTAGTAGTGATTGATTATTCGTGGCTCTTGAGAAGAGATCAAATCTTACTTTGTTACAAATTGAAAAGGTAATGTTGGGGGGCCTTTCGAACCTATTTTTCAAAACTTAGGTTCATAGAATTAGTTTTATAAAACAAACACTAATATTATTTATTCATAAAAATATGATAACATTCCCTTGTATGCAGTCAGTTTTCTTTGAACCAACTAGACATCATATTCTCATACTTTTTATTGTATTCACAGGCATCTGATACCTACAGTCAACTATCCAAACTATCCTCAACGAACAAAATACATACAGTTACCTTAATATTAACAATTGTGAAATTCTGAATTTTTTTATATTGCATATCATGAGATTCTAAAATGTTTTTGCAGTACTTGGAGGAACTCATTGGATCACTTCTCTTCTGTTGGGTTACTTGTGGTGTAAGCTTAGCTGCACTTATTGAGGTATGGATCTGATCGCGTTATATCTCTGATCTTTTGTGCTTTGAACAATTGGATTGCTCCTATTCACCCCAATGGTAATGCAAGGTAAAACTGACTTCCTCTTTTTCCTTCCCTTTAGTTCTTTTGAAAAAATTATTACTACTACTACTAAAGAAAAAAAGTTGTCTCCCGGGTAAAATCTGAAAATTTCTTACTGATTACTATTTACTATTTGGATATTGATTAGTCTTATGCCGTGAAAACTTAATTCCTGAAATACATTTTTGCCATGCTCTTTCTTTATTTTTGTGTTTTTATTACCTGCATCTTCCATGGCCTTCGTTATTTGTGTACCATGGAGCAGGGACTGTGTATTGCAGGAAAGTACTTTAATTTGAAATATAAACATTTTTATCTCTTGAACATTTATTCACTTTCATTATAATAACGAGAAGTTAGTTCTTATAAAAAATAGAAGTTGAAATATGAGCATTCTTCCTTCCGTGGTTCACTTGCTTTGTCTTTCGAATGCGCTTAAATTTCTGAGAGGCGTCTGTTTTTTAATTTTCTTTTTATACTGTCGATAATTGATTTTTTTTTTTTACTATGCATGCAGATAAGGCAGCTTTTTGTCTTGGATGCTGAACCTAGTTACTTTATTCAGTATTGTTGCCACTGGCTTCTTCCTGCTATTATTTTACGTGGTGATAGTTCCAACCTTGGCTGGATTGCTAGTGTAAGTGTAATGTGTGGATAGTTTTTCTTTTGTCCGTATTTGTATTTGTATTTTATTTATATCTTTTTCACTCCTGGGGAGTTTGTATCATCATAGAACATTTTGGCCTTTTCATTAATGAAAAGTTTGTTGCTGGTTTTTTTAAAAAATGAACAGGTTGCTGGTGAACCAGTGGAAGCTCTAATTAGAAGCTATTTTGTGCCAATATTTTCTTTTTGTATGGCACTGCATTGCAGCAAGAGCTCTGGATGTGAAAAGGGAGCTATAGTCCTTCAAAGTTCGATGTTGCATTTTGCCAGCATAACCGAGAGTGAAAGAGATATACTTATAAAGAAACATATGGTTTGATCCTTTCTTTCCACTAATATTTAAGATACTACGCGTTCATGTTCTCTCTGCAATTGACCAGCTTTATGTCAGATGAGAACGCTCAGGAATTATTTGCTCTTCATACTACCTATTGATGTATCATCGGTTAATGATACAGTTCTTATCTTATTTATATCTTTTCACAAGGAAAGAAAAGTATCATCTCATTTTACTTTGCGGGGATGTGGGCTTAAGGTTTTAGTTTCTTCAGTGCTTTATACTTTTCCTTAGTCTTCTTTTGGGACTCATGTCTTTTTTGTTCTTTATAGCTCTTAACTATCAGCGAGATGTTTGTTTCTCGTTAAAAAGAATTGGTTGATAGTCCTGCTCTGTAATACATGTCTGTCTTGGAAAATGCCTATGTTTTGTTCCTTTTGCTTTATTTTTATCTGCCTTGTAAAATACACTTATGATTGATAAGCTTCAACGTAGATCTCCGAGTATATCATTGTTGCCTTCCTGTTGTATTATGTGTACTAAGGGATTGAAAACCCACAACCACCTCTTCATGTGCTCCTTTGCACAATCCTTTTAGTCGTCCTCTCAAAATTTTGGGTGGTCGGGTACTTTACCTACGAATCTTTGAACTCTTTTAAATGTTGTTCTCCTTGGTCATCCTTTCAAGAATGAGAAGGAGATTCTTTGGCTTAACTTCACTTGAGCATTCGTATGGTTGTTATGGCTCGAACAGAACTTGCGTATCTTCACAAATACATCACATGCCTTTGAATTCAAGGATTGATGACGGGTAGGGGATGCAAGCCTAGCCTCCATCCTATCAATTATTTAGGACTCCACCTTGGTGGCAATTCCAAATAGTTGGATTTATTGGAGCCAGTGGTCTAGAAAGTAGCTAACCACGTTGCTTCTTGGAGAAGAACCTTTGTTCCAGAGGAGGGAGATTTACTCTCATGTAGGCTTTGCTTTCCAACCTCCGAATTTACCTGCTGGTCTTCAAAGCCTCTTGTATCCTCTTGTGGTATAATGATGTAGGTGTTATGAGTCTTTTTGGGGTCTTTATGTACTTTTATCATAGGTCTCTGTTGGCTGGAACTTATTTAGCTGTTTTGTGTTTTATGTTACAGTTTAGTGGAGTGTTTATTATTTTCTAGGCTGTTATTACCGGTTCTTCAGGTTGAAGGTAACCGGATGTCTGCCTTTAAATACTAGTTAAGTTGTTTTTTTGGAGGTTAATCTACATTTTAATAAAATTCTTTATTTGGTCTACGCCATATAGCAAATCATTGAAAAGATTGATTAGATTTTTTAGGGGGGAAGGGTAAAGGTGAGTGGAGGCTCCCATGTTATCAACTGGAAAACAGTTACCCCTTCGTTTTTCTCAAGGAGGAGGACTGGGAATTTGCAGAATTTAAGCTTGTAACAATAGTTGGGAAAATATTAGGATTATTAGTATGTTTATTAGTAAAGGGCATATTAGTAAATAGCTAGTAAGTTTGTTAGGGCTTTTGTTATAAATAGAGGGAGTGAGTTGGGAGCAAGGTTTGAAGAATTTCGTGGGATTTCCTTTGGGAAATTTGGGAGTGAGTAGTCCTCTCAAAAGACTATGGTACACTGTATATCATAGTTTATTCACTGATATTGTAATATATATTTCTATCTTGAGTGTTCTTATTAGGAGGTATCCTAAACACAATAAAACCTTGCTCACCAAATGGCGGTAAAGGTTTGACAAAATTTGACTCTCTGGGCCAAAGTCATGAGGGCGAACTGTACTCTCCCCTTTTAAAAAGTGCCATACTAATTGTTTTTAGAATGCCTTGGAGAAATATATCAAAAATGGAAGATTTGTGTCGAAGACTCTCATTCATTGTTACACGGGATGGAACTAGGCGTTGTTTTTGGTTGGACAGTTGAAGCGGCAGAGGAGTCTTTGTAGAGATTTACCTAGAATGTGCAGACCTGTTGCCAATGGAGAGTGTAGAGCTTGTGATATGTGGATAAATGCTTGTACCACCTTTTTGTGGAGAGTTTGGCTAATGAGGAGTAGGAGAGTTTTCAAAGACTTGAGAAGTTCTCTGACCTCCTTCAGAATGACATTGATCTCTTTTTGTCTTTCTGGACTCGCTTAGTTTAAAGATTTTATAACTTATTTCTTAGCATGCTTTTAGCCGGATGGAGATCCCTTTTGTAACCCTCTGGTTTTCATCTTAATTACAGTTCTAGTTCACTCCCGTAAAAAAAAAAAAGAAAATAATAAATAAATAAAATAAAAAGAGCATGATATATCTTTGAAGAAAACATAATTTGCTGAAGATGTTCGATAATCATTTTTACTTGTTACTACCTGCTTGTAGGTGTCCATTATCAGCCAGATCTTAGCTTTAGCATCGTGTACTTCAGAACCTATGAATCCATTCTTTCCGAAGGATACCATTATGCTTGCTGTCCGAACAGTTGTTGATGGTTTCTTGGAAATGTGA

mRNA sequence

ATGGAGGGAGACGAACTCTCCAAGCTGGCTAGTCATTCAAAGAGCTTGACGTTACTGATGACTTGGACCCAGTTCAACAAGAACTTGGTTCAGATTGGAAAAGTAGTGAACAGGATTGCTGAAACTGACCTTCTTGACTGGTTGGGGCGTGTTAAGCTTATTGATTGCATTTGTGACTTTATTTTAATCAATCCAGAAATTGGGCAGACAATGATTGAAAGGTTATTTGTAATGCTGCGGGATCCTGAATATCGAGTTAGGTATTTCCTGGCGAAACGAATAGGCGTTCTCTTCCAGACATGGGATGGCCATGAGGAACTTTTCCAGGATATATGGGAATTGGTCTCTGCTGTGCTTGATAACCTGGCCAGAGAGCTCAATTATTCAGGAAGACAGAAGTACTTGGAGGAACTCATTGGATCACTTCTCTTCTGTTGGGTTACTTGTGGTGTAAGCTTAGCTGCACTTATTGAGAGGAGGGAGATTTACTCTCATGTAGGCTTTGCTTTCCAACCTCCGAATTTACCTGCTGGTCTTCAAAGCCTCTTGTATCCTCTTGTGGTGTCCATTATCAGCCAGATCTTAGCTTTAGCATCGTGTACTTCAGAACCTATGAATCCATTCTTTCCGAAGGATACCATTATGCTTGCTGTCCGAACAGTTGTTGATGGTTTCTTGGAAATGTGA

Coding sequence (CDS)

ATGGAGGGAGACGAACTCTCCAAGCTGGCTAGTCATTCAAAGAGCTTGACGTTACTGATGACTTGGACCCAGTTCAACAAGAACTTGGTTCAGATTGGAAAAGTAGTGAACAGGATTGCTGAAACTGACCTTCTTGACTGGTTGGGGCGTGTTAAGCTTATTGATTGCATTTGTGACTTTATTTTAATCAATCCAGAAATTGGGCAGACAATGATTGAAAGGTTATTTGTAATGCTGCGGGATCCTGAATATCGAGTTAGGTATTTCCTGGCGAAACGAATAGGCGTTCTCTTCCAGACATGGGATGGCCATGAGGAACTTTTCCAGGATATATGGGAATTGGTCTCTGCTGTGCTTGATAACCTGGCCAGAGAGCTCAATTATTCAGGAAGACAGAAGTACTTGGAGGAACTCATTGGATCACTTCTCTTCTGTTGGGTTACTTGTGGTGTAAGCTTAGCTGCACTTATTGAGAGGAGGGAGATTTACTCTCATGTAGGCTTTGCTTTCCAACCTCCGAATTTACCTGCTGGTCTTCAAAGCCTCTTGTATCCTCTTGTGGTGTCCATTATCAGCCAGATCTTAGCTTTAGCATCGTGTACTTCAGAACCTATGAATCCATTCTTTCCGAAGGATACCATTATGCTTGCTGTCCGAACAGTTGTTGATGGTTTCTTGGAAATGTGA

Protein sequence

MEGDELSKLASHSKSLTLLMTWTQFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPEYRVRYFLAKRIGVLFQTWDGHEELFQDIWELVSAVLDNLARELNYSGRQKYLEELIGSLLFCWVTCGVSLAALIERREIYSHVGFAFQPPNLPAGLQSLLYPLVVSIISQILALASCTSEPMNPFFPKDTIMLAVRTVVDGFLEM
Homology
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BLAST of Lsi06G015550 vs. Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-28
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 30   VQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPEYRVRYF 89
            VQ+G +VN+++E  LL W GRVKLI+CICD +L+NP+ GQTMIERL +ML D +YRVR+ 
Sbjct: 1799 VQLGAMVNKVSEFGLLGWFGRVKLINCICDLVLLNPQTGQTMIERLLLMLSDSDYRVRFV 1858

Query: 90   LAKRIGVLFQTWDGHEELFQDI 112
            LA++IG+LFQTWDGHE LFQDI
Sbjct: 1859 LARQIGILFQTWDGHEALFQDI 1880

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BLAST of Lsi06G015550 vs. TrEMBL
Match: F6GSQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08330 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 1 

Query: 10  ASHSKSLTLLMTWTQFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQ 69
           A   K + + M+  +  + L+ +G +VNR+AE D LDW GR+KL+DCI DFIL+NP+IGQ
Sbjct: 445 AGKDKYVGMSMSRRESEQCLISLGDLVNRVAEFDFLDWFGRIKLVDCIYDFILLNPQIGQ 504

Query: 70  TMIERLFVMLRDPEYRVRYFLAKRIGVLFQTWDGHEELFQDIW 113
           TMIERL  MLRD +YRVR+FLA+RIGVLFQTWDGH+ELFQDIW
Sbjct: 505 TMIERLLTMLRDQDYRVRFFLARRIGVLFQTWDGHDELFQDIW 547

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BLAST of Lsi06G015550 vs. TrEMBL
Match: U5FQ28_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08790g PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-30
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1 

Query: 6   LSKLASHSKSLTLLMTWTQFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINP 65
           L  L +  K   L     +   +LV +G++VN+IAE  LLDW GRV+LIDC CDF+L++P
Sbjct: 451 LLSLDASGKEAALTAWKRESELSLVHLGELVNKIAEFGLLDWSGRVRLIDCFCDFVLLSP 510

Query: 66  EIGQTMIERLFVMLRDPEYRVRYFLAKRIGVLFQTWDGHEELFQDI 112
           +IGQTMIERLF+ML+DP+YRVR+ LA+RIGVLFQTWDGH+EL QDI
Sbjct: 511 QIGQTMIERLFLMLQDPDYRVRFSLARRIGVLFQTWDGHDELSQDI 556

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BLAST of Lsi06G015550 vs. TrEMBL
Match: A0A103XWJ5_CYNCS (Armadillo-type fold OS=Cynara cardunculus var. scolymus GN=Ccrd_023579 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 70/134 (52.24%), Postives = 96/134 (71.64%), Query Frame = 1 

Query: 6    LSKLASHSKSLTLLMTWTQFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINP 65
            +S  AS +   ++ +     +++LV +G +VN+IAE D  DW GRVKLIDCIC+F+L+NP
Sbjct: 1029 MSMAASCTSQASMELILENDSQSLVPLGDLVNKIAENDQFDWSGRVKLIDCICNFVLLNP 1088

Query: 66   EIGQTMIERLFVMLRDPEYRVRYFLAKRIGVLFQTWDGHEELFQDIW-----ELVSAVLD 125
            +I Q MIE+L +MLRDP++RVR+ LA+RIGVLFQTWDGH+ELFQDI      +LV    D
Sbjct: 1089 QISQAMIEKLLLMLRDPDFRVRFSLARRIGVLFQTWDGHDELFQDILSNFSVKLVVLFKD 1148

Query: 126  NL--ARELNYSGRQ 133
             L  A+E+  +G Q
Sbjct: 1149 KLVKAKEVLAAGHQ 1162

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BLAST of Lsi06G015550 vs. TrEMBL
Match: B9RB21_RICCO (Ataxia telangiectasia mutated, putative OS=Ricinus communis GN=RCOM_1510550 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1 

Query: 6    LSKLASHSKSLTLLMTWTQFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINP 65
            L  L    K   L +T  +  + L+ +G VV+++AE   LDW GRVKLI CICDF++++P
Sbjct: 914  LLSLNGIQKDADLSLTGREHEQGLIHLGSVVSKVAEFGFLDWRGRVKLIGCICDFVVLSP 973

Query: 66   EIGQTMIERLFVMLRDPEYRVRYFLAKRIGVLFQTWDGHEELFQDIW 113
            + GQTMI RLF++LRDP+YRVR+ LA+RIGVLF+TWDGHEELFQDI+
Sbjct: 974  QNGQTMIGRLFLLLRDPDYRVRFSLAQRIGVLFETWDGHEELFQDIY 1020

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BLAST of Lsi06G015550 vs. TrEMBL
Match: A0A151S9V7_CAJCA (Serine/threonine-protein kinase ATM OS=Cajanus cajan GN=KK1_026560 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 60/82 (73.17%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 30  VQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPEYRVRYF 89
           + +GKVV++++E DL DW GRVKLIDCIC+ +L++P+IGQTMIERLF+ML+D +YRVR F
Sbjct: 5   LSLGKVVHKLSEVDL-DWFGRVKLIDCICNLVLLHPQIGQTMIERLFLMLKDMDYRVRLF 64

Query: 90  LAKRIGVLFQTWDGHEELFQDI 112
           LA+RIGVLFQTWDGHEELFQDI
Sbjct: 65  LARRIGVLFQTWDGHEELFQDI 85

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BLAST of Lsi06G015550 vs. TAIR10
Match: AT3G48190.1 (AT3G48190.1 ataxia-telangiectasia mutated)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-29
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 30   VQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPEYRVRYF 89
            VQ+G +VN+++E  LL W GRVKLI+CICD +L+NP+ GQTMIERL +ML D +YRVR+ 
Sbjct: 1799 VQLGAMVNKVSEFGLLGWFGRVKLINCICDLVLLNPQTGQTMIERLLLMLSDSDYRVRFV 1858

Query: 90   LAKRIGVLFQTWDGHEELFQDI 112
            LA++IG+LFQTWDGHE LFQDI
Sbjct: 1859 LARQIGILFQTWDGHEALFQDI 1880

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BLAST of Lsi06G015550 vs. NCBI nr
Match: gi|659105399|ref|XP_008453087.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 24   QFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPE 83
            QF KNL+QIGKVVNRIAETDLLDW GRVKLIDCIC+FILI+PEIGQTMIERLFVMLRDPE
Sbjct: 976  QFEKNLLQIGKVVNRIAETDLLDWSGRVKLIDCICNFILISPEIGQTMIERLFVMLRDPE 1035

Query: 84   YRVRYFLAKRIGVLFQTWDGHEELFQDI 112
            YRVRY LAK++GVLFQTWDGHEELFQDI
Sbjct: 1036 YRVRYSLAKQMGVLFQTWDGHEELFQDI 1063

[Close]
BLAST of Lsi06G015550 vs. NCBI nr
Match: gi|659105403|ref|XP_008453088.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 24   QFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPE 83
            QF KNL+QIGKVVNRIAETDLLDW GRVKLIDCIC+FILI+PEIGQTMIERLFVMLRDPE
Sbjct: 976  QFEKNLLQIGKVVNRIAETDLLDWSGRVKLIDCICNFILISPEIGQTMIERLFVMLRDPE 1035

Query: 84   YRVRYFLAKRIGVLFQTWDGHEELFQDI 112
            YRVRY LAK++GVLFQTWDGHEELFQDI
Sbjct: 1036 YRVRYSLAKQMGVLFQTWDGHEELFQDI 1063

[Close]
BLAST of Lsi06G015550 vs. NCBI nr
Match: gi|659105395|ref|XP_008453086.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 24   QFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPE 83
            QF KNL+QIGKVVNRIAETDLLDW GRVKLIDCIC+FILI+PEIGQTMIERLFVMLRDPE
Sbjct: 976  QFEKNLLQIGKVVNRIAETDLLDWSGRVKLIDCICNFILISPEIGQTMIERLFVMLRDPE 1035

Query: 84   YRVRYFLAKRIGVLFQTWDGHEELFQDI 112
            YRVRY LAK++GVLFQTWDGHEELFQDI
Sbjct: 1036 YRVRYSLAKQMGVLFQTWDGHEELFQDI 1063

[Close]
BLAST of Lsi06G015550 vs. NCBI nr
Match: gi|778655635|ref|XP_011656922.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-37
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1 

Query: 24   QFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPE 83
            QF KNL+QIGK+VNRIAET LLDW GRVKLIDCIC FILI+PEIGQTMIERLFVMLRDPE
Sbjct: 976  QFEKNLLQIGKLVNRIAETHLLDWSGRVKLIDCICSFILISPEIGQTMIERLFVMLRDPE 1035

Query: 84   YRVRYFLAKRIGVLFQTWDGHEELFQDI 112
            YRVRY LAK++GVLFQTWDGHEELFQDI
Sbjct: 1036 YRVRYSLAKQMGVLFQTWDGHEELFQDI 1063

[Close]
BLAST of Lsi06G015550 vs. NCBI nr
Match: gi|778655632|ref|XP_011656886.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-37
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1 

Query: 24   QFNKNLVQIGKVVNRIAETDLLDWLGRVKLIDCICDFILINPEIGQTMIERLFVMLRDPE 83
            QF KNL+QIGK+VNRIAET LLDW GRVKLIDCIC FILI+PEIGQTMIERLFVMLRDPE
Sbjct: 976  QFEKNLLQIGKLVNRIAETHLLDWSGRVKLIDCICSFILISPEIGQTMIERLFVMLRDPE 1035

Query: 84   YRVRYFLAKRIGVLFQTWDGHEELFQDI 112
            YRVRY LAK++GVLFQTWDGHEELFQDI
Sbjct: 1036 YRVRYSLAKQMGVLFQTWDGHEELFQDI 1063

The following BLAST results are available for this feature:
BLAST of Lsi06G015550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATM_ARATH2.5e-2867.07Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1[more]
BLAST of Lsi06G015550 vs. TrEMBL
Match NameE-valueIdentityDescription
F6GSQ8_VITVI2.6e-3264.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08330 PE=4 SV=... [more]
U5FQ28_POPTR9.1e-3061.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08790g PE=4 SV=1[more]
A0A103XWJ5_CYNCS1.2e-2952.24Armadillo-type fold OS=Cynara cardunculus var. scolymus GN=Ccrd_023579 PE=3 SV=1[more]
B9RB21_RICCO7.7e-2957.94Ataxia telangiectasia mutated, putative OS=Ricinus communis GN=RCOM_1510550 PE=3... [more]
A0A151S9V7_CAJCA2.2e-2873.17Serine/threonine-protein kinase ATM OS=Cajanus cajan GN=KK1_026560 PE=4 SV=1[more]
BLAST of Lsi06G015550 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48190.11.4e-2967.07 ataxia-telangiectasia mutated[more]
BLAST of Lsi06G015550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105399|ref|XP_008453087.1|1.2e-3890.91PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis melo][more]
gi|659105403|ref|XP_008453088.1|1.2e-3890.91PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Cucumis melo][more]
gi|659105395|ref|XP_008453086.1|1.2e-3890.91PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis melo][more]
gi|778655635|ref|XP_011656922.1|2.2e-3788.64PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis sativus][more]
gi|778655632|ref|XP_011656886.1|2.2e-3788.64PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G015550.1Lsi06G015550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016024Armadillo-type foldunknownSSF48371ARM repeatcoord: 35..122
score: 7.6
NoneNo IPR availablePANTHERPTHR37079FAMILY NOT NAMEDcoord: 29..163
score: 1.6
NoneNo IPR availablePANTHERPTHR37079:SF1SUBFAMILY NOT NAMEDcoord: 29..163
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G015550Cp4.1LG04g15620Cucurbita pepo (Zucchini)cpelsiB556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G015550Cucumber (Chinese Long) v3cuclsiB075
Lsi06G015550Cucumber (Chinese Long) v3cuclsiB081
Lsi06G015550Watermelon (97103) v2lsiwmbB356
Lsi06G015550Watermelon (97103) v2lsiwmbB374
Lsi06G015550Watermelon (97103) v2lsiwmbB388
Lsi06G015550Wax gourdlsiwgoB476
Lsi06G015550Wax gourdlsiwgoB489
Lsi06G015550Wax gourdlsiwgoB494
Lsi06G015550Wax gourdlsiwgoB501
Lsi06G015550Bottle gourd (USVL1VR-Ls)lsilsiB110
Lsi06G015550Cucumber (Gy14) v1cgylsiB120
Lsi06G015550Cucumber (Gy14) v1cgylsiB342
Lsi06G015550Cucurbita maxima (Rimu)cmalsiB072
Lsi06G015550Cucurbita maxima (Rimu)cmalsiB144
Lsi06G015550Cucurbita maxima (Rimu)cmalsiB220
Lsi06G015550Cucurbita maxima (Rimu)cmalsiB390
Lsi06G015550Cucurbita moschata (Rifu)cmolsiB058
Lsi06G015550Cucurbita moschata (Rifu)cmolsiB128
Lsi06G015550Cucurbita moschata (Rifu)cmolsiB208
Lsi06G015550Cucurbita moschata (Rifu)cmolsiB375
Lsi06G015550Cucurbita moschata (Rifu)cmolsiB688
Lsi06G015550Cucurbita pepo (Zucchini)cpelsiB042
Lsi06G015550Cucurbita pepo (Zucchini)cpelsiB298
Lsi06G015550Cucurbita pepo (Zucchini)cpelsiB431
Lsi06G015550Wild cucumber (PI 183967)cpilsiB066
Lsi06G015550Wild cucumber (PI 183967)cpilsiB070
Lsi06G015550Cucumber (Chinese Long) v2culsiB070
Lsi06G015550Wild cucumber (PI 183967)cpilsiB388
Lsi06G015550Cucumber (Chinese Long) v2culsiB064
Lsi06G015550Melon (DHL92) v3.5.1lsimeB392
Lsi06G015550Melon (DHL92) v3.5.1lsimeB397
Lsi06G015550Melon (DHL92) v3.5.1lsimeB408
Lsi06G015550Watermelon (Charleston Gray)lsiwcgB351
Lsi06G015550Watermelon (Charleston Gray)lsiwcgB357
Lsi06G015550Watermelon (Charleston Gray)lsiwcgB372
Lsi06G015550Watermelon (97103) v1lsiwmB388
Lsi06G015550Watermelon (97103) v1lsiwmB414
Lsi06G015550Cucumber (Gy14) v2cgyblsiB062
Lsi06G015550Cucumber (Gy14) v2cgyblsiB067
Lsi06G015550Melon (DHL92) v3.6.1lsimedB414
Lsi06G015550Melon (DHL92) v3.6.1lsimedB419
Lsi06G015550Melon (DHL92) v3.6.1lsimedB431
Lsi06G015550Silver-seed gourdcarlsiB331
Lsi06G015550Silver-seed gourdcarlsiB448
Lsi06G015550Silver-seed gourdcarlsiB921
Lsi06G015550Silver-seed gourdcarlsiB955