Lsi06G012960 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G012960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	AT-hook DNA-binding family protein
Location	chr06 : 23506130 .. 23506489 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGGTCGATCTTGCCACCACCGGCACCATCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTTGGTGGAGTCGTAGTGGGTGCGCTCATTGCTTCTGGTCCGGTCGTGATCATGGCAGCAACGTTCATGAACGCGACGTTTGACCGCCTGCCATCGGACGACGAAGAAGTGACCACCGCCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAATGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGTAGAACCATGTCAAAGACTTAA

mRNA sequence

ATGTTGGGGTCGATCTTGCCACCACCGGCACCATCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTTGGTGGAGTCGTAGTGGGTGCGCTCATTGCTTCTGGTCCGGTCGTGATCATGGCAGCAACGTTCATGAACGCGACGTTTGACCGCCTGCCATCGGACGACGAAGAAGTGACCACCGCCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAATGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGTAGAACCATGTCAAAGACTTAA

Coding sequence (CDS)

ATGTTGGGGTCGATCTTGCCACCACCGGCACCATCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTTGGTGGAGTCGTAGTGGGTGCGCTCATTGCTTCTGGTCCGGTCGTGATCATGGCAGCAACGTTCATGAACGCGACGTTTGACCGCCTGCCATCGGACGACGAAGAAGTGACCACCGCCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAATGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGTAGAACCATGTCAAAGACTTAA

Protein sequence

MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT

Homology

[Close]

BLAST of Lsi06G012960 vs. Swiss-Prot
Match: AHL16_ARATH (AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-35
Identity = 79/118 (66.95%), Postives = 93/118 (78.81%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAG QGQVVGG VVG LIASGPVV+MAA+FMNA FDRLP 
Sbjct: 143 LLGSILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPM 202

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSK 119
           DD+E   +MQ+Q Y QNGRS     + D++G+PQNL+TN +   ++YSW  A R MSK
Sbjct: 203 DDDE-AASMQNQQYYQNGRSR---PLDDIHGLPQNLLTNGNSASDIYSWGPAQRVMSK 256

[Close]

BLAST of Lsi06G012960 vs. Swiss-Prot
Match: AHL18_ARATH (AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDD 62
           GS LPPPAP   +GL +YLAG QGQV+GG VVG L AS PVV+MAA+F NA+++RLP ++
Sbjct: 149 GSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNASYERLPLEE 208

Query: 63  EEVT----TAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELY 108
           EE T        ++  G   +     D +   G P NLI + SLP E Y
Sbjct: 209 EEETEREIDGNAARAIGTQTQKQLMQDATSFIGSPSNLINSVSLPGEAY 257

[Close]

BLAST of Lsi06G012960 vs. Swiss-Prot
Match: AHL26_ARATH (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDD 62
           GS LPPPAP   TGL++YLAG QGQVVGG VVG L+ SGPVV+MAA+F NA ++RLP ++
Sbjct: 211 GSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEE 270

Query: 63  EEVTTAMQSQHYG-----------QNGRSHHHLDVSDLYGMPQNLITNSSLPP 105
           +E+ T +Q    G             G+      ++   G+P NL+ +  LPP
Sbjct: 271 DEMQTPVQGGGGGGGGGGGMGSPPMMGQQQAMAAMAAAQGLPPNLLGSVQLPP 323

[Close]

BLAST of Lsi06G012960 vs. Swiss-Prot
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 60/125 (48.00%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLP--S 62
           GS LPPPAP   +GLTIYLAG QGQVVGG VVG L+ASGPVVIMAA+F NA ++RLP   
Sbjct: 185 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEE 244

Query: 63  DDEEVTTA------------------MQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSL 108
           DD+E  TA                   Q+Q   Q  +       S + G+P NL+ +  L
Sbjct: 245 DDQEEQTAGAVANNIDGNATMGGGTQTQTQTQQQQQQQLMQDPTSFIQGLPPNLMNSVQL 304

[Close]

BLAST of Lsi06G012960 vs. Swiss-Prot
Match: AHL20_ARATH (AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           + G+ LP P+P G TGLT+YLAG QGQVVGG VVG L+A G V+++AATF NAT++RLP 
Sbjct: 157 LTGAFLPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPM 216

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDL-------YGMPQNLITNSS--LPPELYSWAA 113
           ++EE     +  H G +       ++ DL       Y MP +LI N +  L  E Y+W  
Sbjct: 217 EEEEDGGGSRQIHGGGDSPPRIGSNLPDLSGMAGPGYNMPPHLIPNGAGQLGHEPYTWVH 276

[Close]

BLAST of Lsi06G012960 vs. TrEMBL
Match: A0A0A0LS82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024960 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.6e-56
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           MLGSILPPPAPSGITGLTIYL+GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS
Sbjct: 1   MLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DDEEV   MQSQHYGQNGRSHHHLDVSDLYG+PQNLITNSSLPPELYSWA AGRTMSKT
Sbjct: 61  DDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWATAGRTMSKT 119

[Close]

BLAST of Lsi06G012960 vs. TrEMBL
Match: B9GT32_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06030g PE=4 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-43
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGS+LPPPAP GITGLTIYLAGAQGQVVGG VVGALIASGPVVIMAA+FM ATFDRLP 
Sbjct: 151 LLGSVLPPPAPQGITGLTIYLAGAQGQVVGGGVVGALIASGPVVIMAASFMKATFDRLPL 210

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DD+E+T A+Q+QHY QNGR HHHLD+SDLYGMPQNL+TN ++ PE+YSW   GRTMSK+
Sbjct: 211 DDDEITAAVQNQHY-QNGR-HHHLDISDLYGMPQNLLTNGAVTPEIYSW-TPGRTMSKS 266

[Close]

BLAST of Lsi06G012960 vs. TrEMBL
Match: F6H5C6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00070 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-43
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAGAQGQVVGG VVGALIASGPV +MAA+FMNATFDRLP 
Sbjct: 153 LLGSILPPPAPPGITGLTIYLAGAQGQVVGGGVVGALIASGPVFVMAASFMNATFDRLPL 212

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DD+EVTTA+QSQHY QNGR HHH+D+SDLYG+P NL+TN ++ PE+YSW A GRT+SKT
Sbjct: 213 DDDEVTTAVQSQHY-QNGR-HHHIDMSDLYGIPPNLLTNGTMLPEIYSW-APGRTLSKT 268

[Close]

BLAST of Lsi06G012960 vs. TrEMBL
Match: A0A067LQP5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10400 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-43
Identity = 94/122 (77.05%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAGAQGQVVGG VVGALIASGPVVIMAA+FMNATFDRLP 
Sbjct: 135 LLGSILPPPAPPGITGLTIYLAGAQGQVVGGGVVGALIASGPVVIMAASFMNATFDRLPL 194

Query: 61  DDEEVTTAMQSQHYGQNGR---SHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMS 120
           D++E+  A+Q+QHY QNGR    HHHLD+SDLYG+PQNL+TN S+PPE+YSW A GRT +
Sbjct: 195 DEDEIAAAVQNQHY-QNGRHNHHHHHLDISDLYGVPQNLLTNGSVPPEIYSW-APGRTTT 254

[Close]

BLAST of Lsi06G012960 vs. TrEMBL
Match: A0A061DKQ7_THECC (AT-hook DNA-binding family protein OS=Theobroma cacao GN=TCM_001878 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.1e-42
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAGAQGQVVGG VVGALIASGPV++MAA+FMNATFDRLP 
Sbjct: 142 LLGSILPPPAPPGITGLTIYLAGAQGQVVGGGVVGALIASGPVLVMAASFMNATFDRLPL 201

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSK 119
           DD+EV  AM +Q Y QN R HHHLD+SDLYGMPQNLITN ++PPE+YSW A GR MSK
Sbjct: 202 DDDEVAAAMPNQ-YHQNAR-HHHLDISDLYGMPQNLITNGTMPPEIYSW-APGRNMSK 256

[Close]

BLAST of Lsi06G012960 vs. TAIR10
Match: AT2G42940.1 (AT2G42940.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-36
Identity = 79/118 (66.95%), Postives = 93/118 (78.81%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAG QGQVVGG VVG LIASGPVV+MAA+FMNA FDRLP 
Sbjct: 143 LLGSILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPM 202

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSK 119
           DD+E   +MQ+Q Y QNGRS     + D++G+PQNL+TN +   ++YSW  A R MSK
Sbjct: 203 DDDE-AASMQNQQYYQNGRSR---PLDDIHGLPQNLLTNGNSASDIYSWGPAQRVMSK 256

[Close]

BLAST of Lsi06G012960 vs. TAIR10
Match: AT3G60870.1 (AT3G60870.1 AT-hook motif nuclear-localized protein 18)

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-20
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDD 62
           GS LPPPAP   +GL +YLAG QGQV+GG VVG L AS PVV+MAA+F NA+++RLP ++
Sbjct: 149 GSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNASYERLPLEE 208

Query: 63  EEVT----TAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELY 108
           EE T        ++  G   +     D +   G P NLI + SLP E Y
Sbjct: 209 EEETEREIDGNAARAIGTQTQKQLMQDATSFIGSPSNLINSVSLPGEAY 257

[Close]

BLAST of Lsi06G012960 vs. TAIR10
Match: AT4G12050.1 (AT4G12050.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDD 62
           GS LPPPAP   TGL++YLAG QGQVVGG VVG L+ SGPVV+MAA+F NA ++RLP ++
Sbjct: 211 GSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEE 270

Query: 63  EEVTTAMQSQHYG-----------QNGRSHHHLDVSDLYGMPQNLITNSSLPP 105
           +E+ T +Q    G             G+      ++   G+P NL+ +  LPP
Sbjct: 271 DEMQTPVQGGGGGGGGGGGMGSPPMMGQQQAMAAMAAAQGLPPNLLGSVQLPP 323

[Close]

BLAST of Lsi06G012960 vs. TAIR10
Match: AT2G45430.1 (AT2G45430.1 AT-hook motif nuclear-localized protein 22)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 60/125 (48.00%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 3   GSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLP--S 62
           GS LPPPAP   +GLTIYLAG QGQVVGG VVG L+ASGPVVIMAA+F NA ++RLP   
Sbjct: 185 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEE 244

Query: 63  DDEEVTTA------------------MQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSL 108
           DD+E  TA                   Q+Q   Q  +       S + G+P NL+ +  L
Sbjct: 245 DDQEEQTAGAVANNIDGNATMGGGTQTQTQTQQQQQQQLMQDPTSFIQGLPPNLMNSVQL 304

[Close]

BLAST of Lsi06G012960 vs. TAIR10
Match: AT4G14465.1 (AT4G14465.1 AT-hook motif nuclear-localized protein 20)

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-19
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           + G+ LP P+P G TGLT+YLAG QGQVVGG VVG L+A G V+++AATF NAT++RLP 
Sbjct: 157 LTGAFLPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPM 216

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDL-------YGMPQNLITNSS--LPPELYSWAA 113
           ++EE     +  H G +       ++ DL       Y MP +LI N +  L  E Y+W  
Sbjct: 217 EEEEDGGGSRQIHGGGDSPPRIGSNLPDLSGMAGPGYNMPPHLIPNGAGQLGHEPYTWVH 276

[Close]

BLAST of Lsi06G012960 vs. NCBI nr
Match: gi|778656460|ref|XP_011649113.1| (PREDICTED: AT-hook motif nuclear-localized protein 16 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           MLGSILPPPAPSGITGLTIYL+GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS
Sbjct: 160 MLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 219

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DDEEV   MQSQHYGQNGRSHHHLDVSDLYG+PQNLITNSSLPPELYSWA AGRTMSKT
Sbjct: 220 DDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWATAGRTMSKT 278

[Close]

BLAST of Lsi06G012960 vs. NCBI nr
Match: gi|700208768|gb|KGN63864.1| (hypothetical protein Csa_1G024960 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           MLGSILPPPAPSGITGLTIYL+GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS
Sbjct: 1   MLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DDEEV   MQSQHYGQNGRSHHHLDVSDLYG+PQNLITNSSLPPELYSWA AGRTMSKT
Sbjct: 61  DDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWATAGRTMSKT 119

[Close]

BLAST of Lsi06G012960 vs. NCBI nr
Match: gi|659106919|ref|XP_008453469.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 2.7e-55
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           MLGSILPPPAPSGITGLTIYL+GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS
Sbjct: 161 MLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 220

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DDEEV   MQSQHYGQNGRSHHHLDVSDLYG+PQNLITNSSLPPELY+WA AGRTMSKT
Sbjct: 221 DDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYTWATAGRTMSKT 279

[Close]

BLAST of Lsi06G012960 vs. NCBI nr
Match: gi|657976639|ref|XP_008380207.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Malus domestica])

HSP 1 Score: 184.9 bits (468), Expect = 8.3e-44
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGSILPPPAP GITGLTIYLAGAQGQV+GG VVGALIASGPVVIMAA+FMNATFDRLP 
Sbjct: 148 LLGSILPPPAPPGITGLTIYLAGAQGQVMGGGVVGALIASGPVVIMAASFMNATFDRLPQ 207

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           D+EEV  A+Q+QH+ QNGR HHH+D+SDLYG+PQNLITN ++PPE+YSW  +GRTMSKT
Sbjct: 208 DEEEVAAALQNQHH-QNGR-HHHVDISDLYGLPQNLITNGNVPPEVYSW-GSGRTMSKT 263

[Close]

BLAST of Lsi06G012960 vs. NCBI nr
Match: gi|1009126445|ref|XP_015880157.1| (PREDICTED: AT-hook motif nuclear-localized protein 16 [Ziziphus jujuba])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 94/119 (78.99%), Postives = 108/119 (90.76%), Query Frame = 1


Query: 1   MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPS 60
           +LGS+LPPPAP GITGLTIYLAGAQGQVVGG VVGALIASGPVVIMAA+FMNATFDRLP 
Sbjct: 183 LLGSVLPPPAPPGITGLTIYLAGAQGQVVGGSVVGALIASGPVVIMAASFMNATFDRLPL 242

Query: 61  DDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT 120
           DD+EV   +Q+QHY QNGR HHHLD+SDLYG+PQNL+T+ ++ PE+YSW A+GRTMSKT
Sbjct: 243 DDDEVAATLQNQHY-QNGR-HHHLDISDLYGLPQNLLTSGTMAPEVYSW-ASGRTMSKT 298

The following BLAST results are available for this feature:

BLAST of Lsi06G012960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AHL16_ARATH	4.1e-35	66.95	AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1...	[more]
AHL18_ARATH	1.2e-18	48.62	AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana GN=AHL18 PE=2...	[more]
AHL26_ARATH	2.1e-18	46.02	AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2...	[more]
AHL22_ARATH	2.1e-18	48.00	AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1...	[more]
AHL20_ARATH	1.3e-17	45.45	AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2...	[more]

BLAST of Lsi06G012960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS82_CUCSA	8.6e-56	94.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024960 PE=4 SV=1	[more]
B9GT32_POPTR	2.2e-43	78.99	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06030g PE=4 SV=2	[more]
F6H5C6_VITVI	2.9e-43	79.83	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00070 PE=4 SV=...	[more]
A0A067LQP5_JATCU	8.3e-43	77.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10400 PE=4 SV=1	[more]
A0A061DKQ7_THECC	4.1e-42	79.66	AT-hook DNA-binding family protein OS=Theobroma cacao GN=TCM_001878 PE=4 SV=1	[more]

BLAST of Lsi06G012960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42940.1	2.3e-36	66.95	Predicted AT-hook DNA-binding family protein	[more]
AT3G60870.1	6.8e-20	48.62	AT-hook motif nuclear-localized protein 18	[more]
AT4G12050.1	1.2e-19	46.02	Predicted AT-hook DNA-binding family protein	[more]
AT2G45430.1	1.2e-19	48.00	AT-hook motif nuclear-localized protein 22	[more]
AT4G14465.1	7.5e-19	45.45	AT-hook motif nuclear-localized protein 20	[more]

BLAST of Lsi06G012960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656460\|ref\|XP_011649113.1\|	1.2e-55	94.96	PREDICTED: AT-hook motif nuclear-localized protein 16 [Cucumis sativus]	[more]
gi\|700208768\|gb\|KGN63864.1\|	1.2e-55	94.96	hypothetical protein Csa_1G024960 [Cucumis sativus]	[more]
gi\|659106919\|ref\|XP_008453469.1\|	2.7e-55	94.12	PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo]	[more]
gi\|657976639\|ref\|XP_008380207.1\|	8.3e-44	79.83	PREDICTED: putative DNA-binding protein ESCAROLA [Malus domestica]	[more]
gi\|1009126445\|ref\|XP_015880157.1\|	2.4e-43	78.99	PREDICTED: AT-hook motif nuclear-localized protein 16 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005175	PPC_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035067	negative regulation of histone acetylation
biological_process	GO:0010529	negative regulation of transposition
biological_process	GO:0008150	biological_process
biological_process	GO:0031056	regulation of histone modification
biological_process	GO:0018205	peptidyl-lysine modification
biological_process	GO:0048523	negative regulation of cellular process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:1900111	positive regulation of histone H3-K9 dimethylation
biological_process	GO:0010208	pollen wall assembly
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012960.1	Lsi06G012960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	DUF296	coord: 2..51 score: 2.
IPR005175	PPC domain	PROFILE	PS51742	PPC	coord: 1..73 score: 15
None	No IPR available	GENE3D	G3DSA:3.30.1330.80		coord: 2..69 score: 3.8
None	No IPR available	PANTHER	PTHR31100	FAMILY NOT NAMED	coord: 1..117 score: 4.1
None	No IPR available	PANTHER	PTHR31100:SF17	AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 16	coord: 1..117 score: 4.1
None	No IPR available	unknown	SSF117856	AF0104/ALDC/Ptd012-like	coord: 2..66 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G012960	Csa1G024960	Cucumber (Chinese Long) v2	culsiB071
Lsi06G012960	CSPI01G04240	Wild cucumber (PI 183967)	cpilsiB071
Lsi06G012960	Cucsa.111460	Cucumber (Gy14) v1	cgylsiB156
Lsi06G012960	Cla018934	Watermelon (97103) v1	lsiwmB414
Lsi06G012960	MELO3C017349	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G012960	ClCG06G014420	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G012960	MELO3C017349.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G012960	Bhi02G000091	Wax gourd	lsiwgoB519
Lsi06G012960	Cp4.1LG04g13830	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G012960	Cp4.1LG18g06860	Cucurbita pepo (Zucchini)	cpelsiB301
Lsi06G012960	CsGy1G004130	Cucumber (Gy14) v2	cgyblsiB068
Lsi06G012960	Carg09110	Silver-seed gourd	carlsiB540
Lsi06G012960	Carg15172	Silver-seed gourd	carlsiB726
Lsi06G012960	CsaV3_1G004240	Cucumber (Chinese Long) v3	cuclsiB082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G012960	Watermelon (97103) v2	lsiwmbB368
Lsi06G012960	Watermelon (97103) v2	lsiwmbB374
Lsi06G012960	Wax gourd	lsiwgoB492
Lsi06G012960	Bottle gourd (USVL1VR-Ls)	lsilsiB113
Lsi06G012960	Cucumber (Gy14) v1	cgylsiB182
Lsi06G012960	Cucurbita maxima (Rimu)	cmalsiB075
Lsi06G012960	Cucurbita maxima (Rimu)	cmalsiB143
Lsi06G012960	Cucurbita maxima (Rimu)	cmalsiB218
Lsi06G012960	Cucurbita maxima (Rimu)	cmalsiB391
Lsi06G012960	Cucurbita moschata (Rifu)	cmolsiB061
Lsi06G012960	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G012960	Cucurbita moschata (Rifu)	cmolsiB206
Lsi06G012960	Cucurbita moschata (Rifu)	cmolsiB377
Lsi06G012960	Cucurbita pepo (Zucchini)	cpelsiB040
Lsi06G012960	Cucurbita pepo (Zucchini)	cpelsiB432
Lsi06G012960	Wild cucumber (PI 183967)	cpilsiB072
Lsi06G012960	Cucumber (Chinese Long) v2	culsiB072
Lsi06G012960	Melon (DHL92) v3.5.1	lsimeB391
Lsi06G012960	Watermelon (Charleston Gray)	lsiwcgB366
Lsi06G012960	Watermelon (97103) v1	lsiwmB408
Lsi06G012960	Cucumber (Gy14) v2	cgyblsiB069
Lsi06G012960	Melon (DHL92) v3.6.1	lsimedB413
Lsi06G012960	Silver-seed gourd	carlsiB359
Lsi06G012960	Cucumber (Chinese Long) v3	cuclsiB083