Lsi06G012830 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G012830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	PIN-like auxin efflux carrier
Location	chr06 : 23380457 .. 23380765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCATTATCAGACTTTTACCATGTCATGACAGCCGTCGTGCCGCTCTACGTTGCCATGATATTAGCTTACGGTTCTGTCAAATGGTGGAAGATTTTTACCCCCGATCAATGCTCCGGTATCAACCGTTTCGTTGCCCTCTTCGCCGTTCCCCTTCTCTCGTTCCACTTCATCGCCTCCAACAATCCCTACACTATGAACTTTCGGTTCATTGCCGCTGATACCCTCCAGAAAATCATTGTCTTGGTGGTGCTCGGCATCTGGACAAAGGTAATATTAAAACTACCACTAAGCTCAAAAGTTTAA

mRNA sequence

ATGATTTCATTATCAGACTTTTACCATGTCATGACAGCCGTCGTGCCGCTCTACGTTGCCATGATATTAGCTTACGGTTCTGTCAAATGGTGGAAGATTTTTACCCCCGATCAATGCTCCGGTATCAACCGTTTCGTTGCCCTCTTCGCCGTTCCCCTTCTCTCGTTCCACTTCATCGCCTCCAACAATCCCTACACTATGAACTTTCGGTTCATTGCCGCTGATACCCTCCAGAAAATCATTGTCTTGGTGGTGCTCGGCATCTGGACAAAGGTAATATTAAAACTACCACTAAGCTCAAAAGTTTAA

Coding sequence (CDS)

ATGATTTCATTATCAGACTTTTACCATGTCATGACAGCCGTCGTGCCGCTCTACGTTGCCATGATATTAGCTTACGGTTCTGTCAAATGGTGGAAGATTTTTACCCCCGATCAATGCTCCGGTATCAACCGTTTCGTTGCCCTCTTCGCCGTTCCCCTTCTCTCGTTCCACTTCATCGCCTCCAACAATCCCTACACTATGAACTTTCGGTTCATTGCCGCTGATACCCTCCAGAAAATCATTGTCTTGGTGGTGCTCGGCATCTGGACAAAGGTAATATTAAAACTACCACTAAGCTCAAAAGTTTAA

Protein sequence

MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIASNNPYTMNFRFIAADTLQKIIVLVVLGIWTKVILKLPLSSKV

Homology

[Close]

BLAST of Lsi06G012830 vs. Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-39
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+ +DFYHVMTA+VPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFI+
Sbjct: 1  MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWT 91
          +NNPYTMN RFIAADTLQK+IVL +L +W+
Sbjct: 61 TNNPYTMNLRFIAADTLQKLIVLALLTLWS 90

[Close]

BLAST of Lsi06G012830 vs. Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.0e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+ +DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          +NNPY MN RF+AAD+LQK+IVL +L +W K+
Sbjct: 61 ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKL 92

[Close]

BLAST of Lsi06G012830 vs. Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-38
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+ +DFYHVMTA+VPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFI+
Sbjct: 1  MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWT 91
          +NNPYTMN RFIAADTLQK++VL +L  W+
Sbjct: 61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWS 90

[Close]

BLAST of Lsi06G012830 vs. Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.2e-36
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+  D Y V+TAVVPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          +N+PY MNFRF+AADTLQKII+LV+L +W  +
Sbjct: 61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANL 92

[Close]

BLAST of Lsi06G012830 vs. Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-35
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+  D Y V+TAV+PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIW 90
          SNNPY MN RFIAADTLQK+I+L +L IW
Sbjct: 61 SNNPYAMNLRFIAADTLQKLIMLTLLIIW 89

[Close]

BLAST of Lsi06G012830 vs. TrEMBL
Match: A0A0A0LPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025070 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L DFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTM+FRFIAADTLQKIIVLVVLGIWTKV
Sbjct: 61 SNNPYTMSFRFIAADTLQKIIVLVVLGIWTKV 92

[Close]

BLAST of Lsi06G012830 vs. TrEMBL
Match: D7URM3_CUCSA (Auxin efflux facilitator OS=Cucumis sativus GN=CsPIN3 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L DFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTM+FRFIAADTLQKIIVLVVLGIWTKV
Sbjct: 61 SNNPYTMSFRFIAADTLQKIIVLVVLGIWTKV 92

[Close]

BLAST of Lsi06G012830 vs. TrEMBL
Match: A0A0D2Q3Z4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G290000 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L+DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTMNFRFIAADTLQKIIVLVVL IW+KV
Sbjct: 61 SNNPYTMNFRFIAADTLQKIIVLVVLAIWSKV 92

[Close]

BLAST of Lsi06G012830 vs. TrEMBL
Match: A0A0D2RPG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G290000 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L+DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTMNFRFIAADTLQKIIVLVVL IW+KV
Sbjct: 61 SNNPYTMNFRFIAADTLQKIIVLVVLAIWSKV 92

[Close]

BLAST of Lsi06G012830 vs. TrEMBL
Match: A0A125RLI2_GOSHI (PIN-formed protein 1d OS=Gossypium hirsutum GN=PIN1d PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L+DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTMNFRFIAADTLQKIIVLVVL IW+KV
Sbjct: 61 SNNPYTMNFRFIAADTLQKIIVLVVLAIWSKV 92

[Close]

BLAST of Lsi06G012830 vs. TAIR10
Match: AT1G73590.1 (AT1G73590.1 Auxin efflux carrier family protein)

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-40
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+ +DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          +NNPY MN RF+AAD+LQK+IVL +L +W K+
Sbjct: 61 ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKL 92

[Close]

BLAST of Lsi06G012830 vs. TAIR10
Match: AT2G01420.2 (AT2G01420.2 Auxin efflux carrier family protein)

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-37
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+  D Y V+TAVVPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          +N+PY MNFRF+AADTLQKII+LV+L +W  +
Sbjct: 61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANL 92

[Close]

BLAST of Lsi06G012830 vs. TAIR10
Match: AT1G23080.1 (AT1G23080.1 Auxin efflux carrier family protein)

HSP 1 Score: 149.8 bits (377), Expect = 8.9e-37
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+  D Y V+TAV+PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIW 90
          SNNPY MN RFIAADTLQK+I+L +L IW
Sbjct: 61 SNNPYAMNLRFIAADTLQKLIMLTLLIIW 89

[Close]

BLAST of Lsi06G012830 vs. TAIR10
Match: AT1G70940.1 (AT1G70940.1 Auxin efflux carrier family protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-36
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MIS  D Y V+TAV+PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIW 90
          +NNPY MN RFIAADTLQKII+L +L +W
Sbjct: 61 TNNPYAMNLRFIAADTLQKIIMLSLLVLW 89

[Close]

BLAST of Lsi06G012830 vs. TAIR10
Match: AT5G57090.1 (AT5G57090.1 Auxin efflux carrier family protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.4e-34
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+  D Y V+ A+VPLYVAMILAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFI+
Sbjct: 1  MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIW 90
          SN+PY MN+ F+AAD+LQK+++L  L +W
Sbjct: 61 SNDPYAMNYHFLAADSLQKVVILAALFLW 89

[Close]

BLAST of Lsi06G012830 vs. NCBI nr
Match: gi|659106969|ref|XP_008453480.1| (PREDICTED: probable auxin efflux carrier component 1c [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+LSDFYHVMTAVVPLYVAMILAYGSVKWW IFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLSDFYHVMTAVVPLYVAMILAYGSVKWWNIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTM+FRFIAADTLQKIIVLVVLGIWTKV
Sbjct: 61 SNNPYTMSFRFIAADTLQKIIVLVVLGIWTKV 92

[Close]

BLAST of Lsi06G012830 vs. NCBI nr
Match: gi|700208779|gb|KGN63875.1| (hypothetical protein Csa_1G025070 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L DFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTM+FRFIAADTLQKIIVLVVLGIWTKV
Sbjct: 61 SNNPYTMSFRFIAADTLQKIIVLVVLGIWTKV 92

[Close]

BLAST of Lsi06G012830 vs. NCBI nr
Match: gi|793427270|ref|NP_001292667.1| (probable auxin efflux carrier component 1c [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L DFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTM+FRFIAADTLQKIIVLVVLGIWTKV
Sbjct: 61 SNNPYTMSFRFIAADTLQKIIVLVVLGIWTKV 92

[Close]

BLAST of Lsi06G012830 vs. NCBI nr
Match: gi|985768595|gb|AMD39987.1| (PIN-formed protein 1d [Gossypium hirsutum])

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L+DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTMNFRFIAADTLQKIIVLVVL IW+KV
Sbjct: 61 SNNPYTMNFRFIAADTLQKIIVLVVLAIWSKV 92

[Close]

BLAST of Lsi06G012830 vs. NCBI nr
Match: gi|823215144|ref|XP_012440328.1| (PREDICTED: probable auxin efflux carrier component 1c [Gossypium raimondii])

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MISLSDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60
          MI+L+DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA
Sbjct: 1  MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61 SNNPYTMNFRFIAADTLQKIIVLVVLGIWTKV 93
          SNNPYTMNFRFIAADTLQKIIVLVVL IW+KV
Sbjct: 61 SNNPYTMNFRFIAADTLQKIIVLVVLAIWSKV 92

The following BLAST results are available for this feature:

BLAST of Lsi06G012830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIN1C_ORYSJ	6.9e-39	84.44	Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PI...	[more]
PINI_ARATH	9.0e-39	82.61	Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1	[more]
PIN1_ORYSJ	1.5e-38	83.33	Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV...	[more]
PIN4_ARATH	4.2e-36	77.17	Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1	[more]
PIN7_ARATH	1.6e-35	79.78	Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2	[more]

BLAST of Lsi06G012830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPQ3_CUCSA	1.6e-42	96.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025070 PE=4 SV=1	[more]
D7URM3_CUCSA	1.6e-42	96.74	Auxin efflux facilitator OS=Cucumis sativus GN=CsPIN3 PE=2 SV=1	[more]
A0A0D2Q3Z4_GOSRA	6.1e-42	94.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G290000 PE=4 SV=1	[more]
A0A0D2RPG8_GOSRA	6.1e-42	94.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G290000 PE=4 SV=1	[more]
A0A125RLI2_GOSHI	6.1e-42	94.57	PIN-formed protein 1d OS=Gossypium hirsutum GN=PIN1d PE=2 SV=1	[more]

BLAST of Lsi06G012830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73590.1	5.1e-40	82.61	Auxin efflux carrier family protein	[more]
AT2G01420.2	2.4e-37	77.17	Auxin efflux carrier family protein	[more]
AT1G23080.1	8.9e-37	79.78	Auxin efflux carrier family protein	[more]
AT1G70940.1	1.2e-36	79.78	Auxin efflux carrier family protein	[more]
AT5G57090.1	5.4e-34	71.91	Auxin efflux carrier family protein	[more]

BLAST of Lsi06G012830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659106969\|ref\|XP_008453480.1\|	1.8e-42	96.74	PREDICTED: probable auxin efflux carrier component 1c [Cucumis melo]	[more]
gi\|700208779\|gb\|KGN63875.1\|	2.3e-42	96.74	hypothetical protein Csa_1G025070 [Cucumis sativus]	[more]
gi\|793427270\|ref\|NP_001292667.1\|	2.3e-42	96.74	probable auxin efflux carrier component 1c [Cucumis sativus]	[more]
gi\|985768595\|gb\|AMD39987.1\|	8.7e-42	94.57	PIN-formed protein 1d [Gossypium hirsutum]	[more]
gi\|823215144\|ref\|XP_012440328.1\|	8.7e-42	94.57	PREDICTED: probable auxin efflux carrier component 1c [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR004776	Mem_trans

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010315	auxin efflux
biological_process	GO:0009908	flower development
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0048364	root development
biological_process	GO:0010358	leaf shaping
biological_process	GO:0010338	leaf formation
biological_process	GO:0010252	auxin homeostasis
biological_process	GO:0009630	gravitropism
biological_process	GO:0010229	inflorescence development
biological_process	GO:0048826	cotyledon morphogenesis
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0009925	basal plasma membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0010329	auxin efflux transmembrane transporter activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012830.1	Lsi06G012830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 9..98 score: 1.1
None	No IPR available	PANTHER	PTHR31752	FAMILY NOT NAMED	coord: 2..92 score: 5.5
None	No IPR available	PANTHER	PTHR31752:SF12	SUBFAMILY NOT NAMED	coord: 2..92 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G012830	MELO3C002132.2	Melon (DHL92) v3.6.1	lsimedB413
Lsi06G012830	MELO3C017357.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G012830	Cla97C06G123780	Watermelon (97103) v2	lsiwmbB374
Lsi06G012830	Cla97C04G077450	Watermelon (97103) v2	lsiwmbB368
Lsi06G012830	Bhi02G000102	Wax gourd	lsiwgoB519
Lsi06G012830	Bhi08G001076	Wax gourd	lsiwgoB492
Lsi06G012830	Cp4.1LG09g11110	Cucurbita pepo (Zucchini)	cpelsiB040
Lsi06G012830	Cp4.1LG20g01520	Cucurbita pepo (Zucchini)	cpelsiB432
Lsi06G012830	Cp4.1LG04g13660	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G012830	CsGy1G004250	Cucumber (Gy14) v2	cgyblsiB068
Lsi06G012830	CsGy1G007060	Cucumber (Gy14) v2	cgyblsiB069
Lsi06G012830	CsaV3_1G004350	Cucumber (Chinese Long) v3	cuclsiB082
Lsi06G012830	CsaV3_1G007160	Cucumber (Chinese Long) v3	cuclsiB083

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi06G012830	Lsi02G002330	Bottle gourd (USVL1VR-Ls)	lsilsiB113

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G012830	Cucumber (Gy14) v1	cgylsiB182
Lsi06G012830	Cucumber (Gy14) v1	cgylsiB156
Lsi06G012830	Cucurbita maxima (Rimu)	cmalsiB075
Lsi06G012830	Cucurbita maxima (Rimu)	cmalsiB143
Lsi06G012830	Cucurbita maxima (Rimu)	cmalsiB218
Lsi06G012830	Cucurbita maxima (Rimu)	cmalsiB391
Lsi06G012830	Cucurbita moschata (Rifu)	cmolsiB061
Lsi06G012830	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G012830	Cucurbita moschata (Rifu)	cmolsiB206
Lsi06G012830	Cucurbita moschata (Rifu)	cmolsiB377
Lsi06G012830	Cucurbita pepo (Zucchini)	cpelsiB301
Lsi06G012830	Wild cucumber (PI 183967)	cpilsiB071
Lsi06G012830	Wild cucumber (PI 183967)	cpilsiB072
Lsi06G012830	Cucumber (Chinese Long) v2	culsiB071
Lsi06G012830	Cucumber (Chinese Long) v2	culsiB072
Lsi06G012830	Melon (DHL92) v3.5.1	lsimeB391
Lsi06G012830	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G012830	Watermelon (Charleston Gray)	lsiwcgB366
Lsi06G012830	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G012830	Watermelon (97103) v1	lsiwmB408
Lsi06G012830	Watermelon (97103) v1	lsiwmB414
Lsi06G012830	Silver-seed gourd	carlsiB359
Lsi06G012830	Silver-seed gourd	carlsiB540
Lsi06G012830	Silver-seed gourd	carlsiB726