Lsi06G012490 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G012490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 23077952 .. 23080571 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTCCGACATCTTCAACTTCGGTTGGCTCCTCTTCCCTCACCATTGCAGCATCTCCAATTTCGGTACCTCGCTCTCTCGTTTTTCGTTATCGTTCCCCTGGTTCCGTAGGTATTTATTTGTATGATGTCGTTTCGAACGCATGATTGTCCTTATATTTAAGGCCTTTCGAACTAGGTTTTCATGAGTAATTTGTTGTTTGTTTGTGCAATTTATTCTTTTCTTAGCTTTGAGTTGGGAAGTTGATGAATTGAGTGAAACTGATGGATTTTACTCTTGATTTTCCGATGATTTTATCATTTTCTGTGTTCATTTTGATTTTGGGTGGAGCTGATAATTTTACTCTTGATTTTCCCATGAGCATTATCAAGAATGAAATATCATCTATAGAATCATACAAATCTAAATATACGAACATCCATGCAAAGGGGTGATTTGGAAAAGTTTCTCTTAAGATCAATTGGAAACTTGAAATATGAAACAGGGATAGAGGAGATCTCCAGAACCCATTTGTAAAATTCAACTAAACCTTCTCCATCACAAAATAACAAGAGCATTCCGAAGAAAAAAATCTCATGTTCAATCAAGAGTCGAGACTTTCCTTGAGCGTAAATGAACGAACTTGAATTACTAGATAATGACTTTTATAATAACAAATAACCAAGGCTTTCCATGAATTTGAAGTCATAAAAAATAAGAAACAGGGGGGAGACCTTAAAGCTTAAAGCTAATACAGAGAAAGTGGATGAAGGGTTTCTAGTTTTCATGAGAAAATAATCTTCCCCCTTTTTAGACTGCGTTGCACTCCCAAATCTTACATTTGGTATCCCTTCCACTCCCAAATCTTACATTTGGTATCCCTTCCACTCTCCTTTTTTCTTTCATTCAGAACTGTGACGAACAGTAAAATCAAAATACCCAATTAAAATTCTTAATGATTCCAATCTGTTTGTATTTGTCTCTAGATTCTTGATTTTGTTTTATTTCTTGATTTTCATTCTCTTTAAGAGTTTGTATCCTTTAAAGTTTGAACTTTTATTTCTTTTCATTATATCAACGAGAAGTTGTTTCTTGTTCAAAATTCGCTATATATGTTTGTAATTGATTTCTATTTGAAATGTAGTTTCGGGATCCCATATTTTTAGGGATTGTTGTAGTTGTGGTTAAATGTTGTAATGATTTAGCGTGCTCCCACGTTTTTAGCTTTATTTAATTTATTTAATATACGTAAATAACAATTGTATCTTCCTTGTGATATTGGGTTTTGATTTAGTGATGTTAGTTTAATGTAATAATTTTTTTATTCAGCGATGGGAAAAGAAAAGAGGGAGAATAAAAGAAGAGCAAGTGCAAGGTTGCAAGTAGCAGGGTCCCCCTCGGTAAAGAATCCTGAGAAACAGACAACGCCCATCCATTTGGGAAGCAATGAGGAGGTATTTTATATTAGTTCACATATTTTTATAGGTTATATATAAATATTCTGAGGTATATATAATTGATGTGTTGCATATACAGACACAAGTCTCAAATAGAGACGTAGTGAGCACAACAAACACCAAGGATACCATGCTTGGGGGAACACAAGTGGTTGTAAAGAGGGTCAGAAGCAAACAACCAAATAAGGGGGCCCTCAAGTCAAAAAATAAGGGAAAATCCAAGAAGAAACAATCTGATTCTAAAAATAGTGATGTATATAACGGTATTTACATTATGTAAAATACTTTGCATTATGCTTACTAACTCCAACTATTATTTTAGGCATATGCAAGTTTGAACAATGAAAGTTCCGGTGAGGGGGACTATTCTGACACGGAGTCTGAAAATGATGCACCTCCAACAAAGAAACCAAGGAATTTTGAGGGGAAAAAGGTATGTAAGATCTTATGTTTTATTTTTTTCAGTAGCCATAAAACAATGAAATGAATGTCATGATTATTTTTGATAGGATCAACAACTTTCATTGAAAAAAATGAAAGAATATATGGAAAAAAAAAGAAAAAAAGAAAAAAGAAACTAAACCCATATCCATTATTTATTGAATGAGCATCTTAAGAATTAGGAATTCAAGGAGTTGAGAGTAAACATGGCTTTCCTCTATGATACATTTTATCACAGAGAAATTTTAGTTTGAGATTTTGAGCTTGCAGTTTCTCACGGAAACTACTCCCAACTTTCTTGCCATTGCTGCCTTCGCCCGCACCACTGCCGCCAATGCACATGCTGCTGCTTCCATTGCTCGTAAGGCTGCTTCTATTGCCCTCTGCACTGACCACGCCAATGCTGCTGATCCTGCTGCTGATGCTGCTGATGCTGCTGACGCTGCTGCTGACGCTGCTGCTGCTGCTGCTGATGTCATTGCAAAATTTGCTGACATTGTCGATATTGCAACTGATCGCGTTGCCGCTAATAATCACAATGAAGCTGTCAATGATTCTGAAGCTCTCTGCAATTTATGTAACCACCCCTCTGGCTATTTCGCTGCTCTCCGTACCGCTGTTTTGAATGCCCTTACTGCCATTTCAAAAGCCACAAGATCTATACTAGTTGCCCAGGGGGCCGCAAAGGTCTGCTCATTCTCCAGCTATCATTGCCAGCATCAATGCCAAAAAAAGCCATAG

mRNA sequence

TTTCTCTCCGACATCTTCAACTTCGGTTGGCTCCTCTTCCCTCACCATTGCAGCATCTCCAATTTCGCGATGGGAAAAGAAAAGAGGGAGAATAAAAGAAGAGCAAGTGCAAGGTTGCAAGTAGCAGGGTCCCCCTCGGTAAAGAATCCTGAGAAACAGACAACGCCCATCCATTTGGGAAGCAATGAGGAGACACAAGTCTCAAATAGAGACGTAGTGAGCACAACAAACACCAAGGATACCATGCTTGGGGGAACACAAGTGGTTGTAAAGAGGGCATATGCAAGTTTGAACAATGAAAGTTCCGGTGAGGGGGACTATTCTGACACGGAGTCTGAAAATGATGCACCTCCAACAAAGAAACCAAGGAATTTTGAGGGGAAAAAGTTTCTCACGGAAACTACTCCCAACTTTCTTGCCATTGCTGCCTTCGCCCGCACCACTGCCGCCAATGCACATGCTGCTGCTTCCATTGCTCGTAAGGCTGCTTCTATTGCCCTCTGCACTGACCACGCCAATGCTGCTGATCCTGCTGCTGATGCTGCTGATGCTGCTGACGCTGCTGCTGACGCTGCTGCTGCTGCTGCTGATGTCATTGCAAAATTTGCTGACATTGTCGATATTGCAACTGATCGCGTTGCCGCTAATAATCACAATGAAGCTGTCAATGATTCTGAAGCTCTCTGCAATTTATGTAACCACCCCTCTGGCTATTTCGCTGCTCTCCGTACCGCTGTTTTGAATGCCCTTACTGCCATTTCAAAAGCCACAAGATCTATACTAGTTGCCCAGGGGGCCGCAAAGGTCTGCTCATTCTCCAGCTATCATTGCCAGCATCAATGCCAAAAAAAGCCATAG

Coding sequence (CDS)

ATGGGAAAAGAAAAGAGGGAGAATAAAAGAAGAGCAAGTGCAAGGTTGCAAGTAGCAGGGTCCCCCTCGGTAAAGAATCCTGAGAAACAGACAACGCCCATCCATTTGGGAAGCAATGAGGAGACACAAGTCTCAAATAGAGACGTAGTGAGCACAACAAACACCAAGGATACCATGCTTGGGGGAACACAAGTGGTTGTAAAGAGGGCATATGCAAGTTTGAACAATGAAAGTTCCGGTGAGGGGGACTATTCTGACACGGAGTCTGAAAATGATGCACCTCCAACAAAGAAACCAAGGAATTTTGAGGGGAAAAAGTTTCTCACGGAAACTACTCCCAACTTTCTTGCCATTGCTGCCTTCGCCCGCACCACTGCCGCCAATGCACATGCTGCTGCTTCCATTGCTCGTAAGGCTGCTTCTATTGCCCTCTGCACTGACCACGCCAATGCTGCTGATCCTGCTGCTGATGCTGCTGATGCTGCTGACGCTGCTGCTGACGCTGCTGCTGCTGCTGCTGATGTCATTGCAAAATTTGCTGACATTGTCGATATTGCAACTGATCGCGTTGCCGCTAATAATCACAATGAAGCTGTCAATGATTCTGAAGCTCTCTGCAATTTATGTAACCACCCCTCTGGCTATTTCGCTGCTCTCCGTACCGCTGTTTTGAATGCCCTTACTGCCATTTCAAAAGCCACAAGATCTATACTAGTTGCCCAGGGGGCCGCAAAGGTCTGCTCATTCTCCAGCTATCATTGCCAGCATCAATGCCAAAAAAAGCCATAG

Protein sequence

MGKEKRENKRRASARLQVAGSPSVKNPEKQTTPIHLGSNEETQVSNRDVVSTTNTKDTMLGGTQVVVKRAYASLNNESSGEGDYSDTESENDAPPTKKPRNFEGKKFLTETTPNFLAIAAFARTTAANAHAAASIARKAASIALCTDHANAADPAADAADAADAAADAAAAAADVIAKFADIVDIATDRVAANNHNEAVNDSEALCNLCNHPSGYFAALRTAVLNALTAISKATRSILVAQGAAKVCSFSSYHCQHQCQKKP

Homology

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BLAST of Lsi06G012490 vs. NCBI nr
Match: gi|778730273|ref|XP_011659745.1| (PREDICTED: uncharacterized protein LOC105436255 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 88/184 (47.83%), Postives = 103/184 (55.98%), Query Frame = 1


Query: 77  ESSGEGDYSDTESENDAPPTKKPRNFEGKKFLTETTPNFLAI----------AAFARTTA 136
           E     DYS T+S++DA PTK+P+N EGKK LTE T NF A           A+ AR +A
Sbjct: 72  EPKNSEDYSGTKSKDDAHPTKEPKNSEGKKVLTENTSNFPATCRFVADGRINASLARWSA 131

Query: 137 ANAHAAASIARKAASIALCTDHANAADPAADAADAADAAADAAAAAADVIAKFADIVDIA 196
             A   AS+AR  AS ALC D ANAA  AADAADAA   AD A          AD VD A
Sbjct: 132 KIARNRASVARDRASTALCIDKANAARAAADAADAAAVVADDA----------ADAVDTA 191

Query: 197 TDRVAAN----NHNEAVNDSEALCNL-CNHPSGYFAALRTAVLNALTAISKATRSILVAQ 246
           TD +AA     +H +AV+D EA   L  NHP  Y+AAL TA+ +A  A S A RS     
Sbjct: 192 TDCIAAGIVAFSHTKAVDDYEAANTLYMNHPD-YYAALMTAIKDA-GAASGAARSAAEEA 243

The following BLAST results are available for this feature:

BLAST of Lsi06G012490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G012490 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi06G012490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G012490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730273\|ref\|XP_011659745.1\|	2.7e-15	47.83	PREDICTED: uncharacterized protein LOC105436255 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012490.1	Lsi06G012490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G012490	Silver-seed gourd	carlsiB540
Lsi06G012490	Silver-seed gourd	carlsiB726
Lsi06G012490	Cucumber (Chinese Long) v3	cuclsiB082
Lsi06G012490	Watermelon (97103) v2	lsiwmbB374
Lsi06G012490	Wax gourd	lsiwgoB519
Lsi06G012490	Cucumber (Gy14) v1	cgylsiB156
Lsi06G012490	Cucurbita maxima (Rimu)	cmalsiB075
Lsi06G012490	Cucurbita maxima (Rimu)	cmalsiB143
Lsi06G012490	Cucurbita moschata (Rifu)	cmolsiB061
Lsi06G012490	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G012490	Cucurbita pepo (Zucchini)	cpelsiB301
Lsi06G012490	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G012490	Wild cucumber (PI 183967)	cpilsiB071
Lsi06G012490	Cucumber (Chinese Long) v2	culsiB071
Lsi06G012490	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G012490	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G012490	Watermelon (97103) v1	lsiwmB414
Lsi06G012490	Cucumber (Gy14) v2	cgyblsiB068
Lsi06G012490	Melon (DHL92) v3.6.1	lsimedB419