Lsi06G011420 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G011420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionATP synthase epsilon chain, chloroplastic
Locationchr06 : 21689107 .. 21689517 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATACGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

mRNA sequence

ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATACGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

Coding sequence (CDS)

ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATACGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

Protein sequence

MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Homology
[Close]
BLAST of Lsi06G011420 vs. Swiss-Prot
Match: ATPE_CUCSA (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. Swiss-Prot
Match: ATPE_GOSBA (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-58
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]
BLAST of Lsi06G011420 vs. Swiss-Prot
Match: ATPE_GOSHI (ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-58
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]
BLAST of Lsi06G011420 vs. Swiss-Prot
Match: ATPE_HELAN (ATP synthase epsilon chain, chloroplastic OS=Helianthus annuus GN=atpE PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-58
Identity = 119/134 (88.81%), Postives = 127/134 (94.78%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+T+LVNDAEK+SDIDPQEAQQTLEIAEA LRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITVLVNDAEKSSDIDPQEAQQTLEIAEAALRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]
BLAST of Lsi06G011420 vs. Swiss-Prot
Match: ATPE_EUCGG (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpE PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-58
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TN+GQIGVLP+HAPIATAVDIGIL+IRL  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNTGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+AEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]
BLAST of Lsi06G011420 vs. TrEMBL
Match: W8E6W2_9ROSI (ATP synthase CF1 epsilon subunit OS=Cucumis hystrix GN=atpE PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. TrEMBL
Match: G3ETZ1_CUCME (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo GN=atpE PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. TrEMBL
Match: X2EZM8_LAGSI (ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria GN=atpE PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. TrEMBL
Match: G9HXF0_CITLA (ATP synthase epsilon chain, chloroplastic OS=Citrullus lanatus GN=atpE PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. TrEMBL
Match: A0A0S2IEZ8_9ROSI (AtpE OS=Cucurbita ecuadorensis GN=atpE PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-63
Identity = 130/136 (95.59%), Postives = 133/136 (97.79%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIW SEVKE+ILVTNSGQIGVLP+HAPIAT VDIGIL+IRLT NDGWL
Sbjct: 1   MTLNLSVLTPNRIIWASEVKEMILVTNSGQIGVLPNHAPIATGVDIGILRIRLTDNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. TAIR10
Match: ATCG00470.1 (ATCG00470.1 ATP synthase epsilon chain)

HSP 1 Score: 220.7 bits (561), Expect = 5.5e-58
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVL +HAPIATAVDIGILKIRL   + WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLANHAPIATAVDIGILKIRLA--NQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEA+N +
Sbjct: 121 LRRARTRVEALNTI 132

[Close]
BLAST of Lsi06G011420 vs. NCBI nr
Match: gi|68164809|ref|YP_247605.1| (ATP synthase CF1 epsilon subunit [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. NCBI nr
Match: gi|952955568|gb|ALO22914.1| (AtpE (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 248.1 bits (632), Expect = 9.1e-63
Identity = 130/136 (95.59%), Postives = 133/136 (97.79%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIW SEVKE+ILVTNSGQIGVLP+HAPIAT VDIGIL+IRLT NDGWL
Sbjct: 1   MTLNLSVLTPNRIIWASEVKEMILVTNSGQIGVLPNHAPIATGVDIGILRIRLTANDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. NCBI nr
Match: gi|952954676|gb|ALO22035.1| (AtpE (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 248.1 bits (632), Expect = 9.1e-63
Identity = 130/136 (95.59%), Postives = 133/136 (97.79%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIW SEVKE+ILVTNSGQIGVLP+HAPIAT VDIGIL+IRLT NDGWL
Sbjct: 1   MTLNLSVLTPNRIIWASEVKEMILVTNSGQIGVLPNHAPIATGVDIGILRIRLTDNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. NCBI nr
Match: gi|952954579|gb|ALO21940.1| (AtpE (plastid) [Cucurbita cordata])

HSP 1 Score: 245.4 bits (625), Expect = 5.9e-62
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIW SEVKE+ILVTNSGQIGVLP+HAPIAT VDIGIL+IRLT NDGWL
Sbjct: 1   MTLNLSVLTPNRIIWASEVKEMILVTNSGQIGVLPNHAPIATGVDIGILRIRLTANDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKAS IDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASGIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]
BLAST of Lsi06G011420 vs. NCBI nr
Match: gi|952954489|gb|ALO21851.1| (AtpE (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-61
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 1 

Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60
           MTLNLSVLTPNRIIW SEVKE+ILVTNSGQIGVLP+HAPIAT VDIGILKI LT N GWL
Sbjct: 1   MTLNLSVLTPNRIIWASEVKEMILVTNSGQIGVLPNHAPIATGVDIGILKICLTDNAGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

The following BLAST results are available for this feature:
BLAST of Lsi06G011420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPE_CUCSA1.5e-68100.00ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1[more]
ATPE_GOSBA1.0e-5889.55ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 S... [more]
ATPE_GOSHI1.0e-5889.55ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=... [more]
ATPE_HELAN2.3e-5888.81ATP synthase epsilon chain, chloroplastic OS=Helianthus annuus GN=atpE PE=3 SV=1[more]
ATPE_EUCGG2.3e-5888.06ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
BLAST of Lsi06G011420 vs. TrEMBL
Match NameE-valueIdentityDescription
W8E6W2_9ROSI1.6e-66100.00ATP synthase CF1 epsilon subunit OS=Cucumis hystrix GN=atpE PE=3 SV=1[more]
G3ETZ1_CUCME1.6e-66100.00ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo GN=atpE PE... [more]
X2EZM8_LAGSI1.6e-66100.00ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria GN=atpE PE=3 SV... [more]
G9HXF0_CITLA1.6e-66100.00ATP synthase epsilon chain, chloroplastic OS=Citrullus lanatus GN=atpE PE=3 SV=1[more]
A0A0S2IEZ8_9ROSI6.4e-6395.59AtpE OS=Cucurbita ecuadorensis GN=atpE PE=3 SV=1[more]
BLAST of Lsi06G011420 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00470.15.5e-5888.06ATCG00470.1 ATP synthase epsilon chain[more]
BLAST of Lsi06G011420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|68164809|ref|YP_247605.1|2.3e-66100.00ATP synthase CF1 epsilon subunit [Cucumis sativus][more]
gi|952955568|gb|ALO22914.1|9.1e-6395.59AtpE (plastid) [Cucurbita pedatifolia][more]
gi|952954676|gb|ALO22035.1|9.1e-6395.59AtpE (plastid) [Cucurbita ecuadorensis][more]
gi|952954579|gb|ALO21940.1|5.9e-6294.85AtpE (plastid) [Cucurbita cordata][more]
gi|952954489|gb|ALO21851.1|2.9e-6194.85AtpE (plastid) [Cucurbita argyrosperma subsp. sororia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: INTERPRO
TermDefinition
IPR020547ATP_synth_F1_dsu/esu_C
IPR020546ATP_synth_F1_dsu/esu_N
IPR001469ATP_synth_F1_dsu/esu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G011420.1Lsi06G011420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001469ATPase, F1 complex, delta/epsilon subunitHAMAPMF_00530ATP_synth_epsil_baccoord: 1..130
score: 23
IPR001469ATPase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 1..132
score: 1.7
IPR001469ATPase, F1 complex, delta/epsilon subunitTIGRFAMsTIGR01216TIGR01216coord: 2..132
score: 6.6
IPR020546ATPase, F1 complex, delta/epsilon subunit, N-terminalPRODOMPD000944coord: 18..89
score: 2.0
IPR020546ATPase, F1 complex, delta/epsilon subunit, N-terminalGENE3DG3DSA:2.60.15.10coord: 1..90
score: 1.4
IPR020546ATPase, F1 complex, delta/epsilon subunit, N-terminalPFAMPF02823ATP-synt_DE_Ncoord: 3..83
score: 4.0
IPR020546ATPase, F1 complex, delta/epsilon subunit, N-terminalunknownSSF51344Epsilon subunit of F1F0-ATP synthase N-terminal domaincoord: 1..84
score: 5.89
IPR020547ATP synthase delta/epsilon subunit, C-terminal domainPFAMPF00401ATP-synt_DEcoord: 88..131
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 98..118
scor
NoneNo IPR availablePANTHERPTHR13822:SF8ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 1..132
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G011420Cucumber (Chinese Long) v3cuclsiB085
Lsi06G011420Cucumber (Chinese Long) v3cuclsiB146
Lsi06G011420Cucumber (Chinese Long) v3cuclsiB321
Lsi06G011420Watermelon (97103) v2lsiwmbB372
Lsi06G011420Watermelon (97103) v2lsiwmbB380
Lsi06G011420Wax gourdlsiwgoB500
Lsi06G011420Wax gourdlsiwgoB503
Lsi06G011420Bottle gourd (USVL1VR-Ls)lsilsiB061
Lsi06G011420Cucumber (Gy14) v1cgylsiB440
Lsi06G011420Cucurbita maxima (Rimu)cmalsiB066
Lsi06G011420Cucurbita maxima (Rimu)cmalsiB131
Lsi06G011420Cucurbita maxima (Rimu)cmalsiB447
Lsi06G011420Cucurbita moschata (Rifu)cmolsiB053
Lsi06G011420Cucurbita moschata (Rifu)cmolsiB121
Lsi06G011420Cucurbita pepo (Zucchini)cpelsiB307
Lsi06G011420Cucurbita pepo (Zucchini)cpelsiB567
Lsi06G011420Wild cucumber (PI 183967)cpilsiB075
Lsi06G011420Wild cucumber (PI 183967)cpilsiB301
Lsi06G011420Cucumber (Chinese Long) v2culsiB076
Lsi06G011420Cucumber (Chinese Long) v2culsiB301
Lsi06G011420Melon (DHL92) v3.5.1lsimeB402
Lsi06G011420Melon (DHL92) v3.5.1lsimeB424
Lsi06G011420Watermelon (Charleston Gray)lsiwcgB370
Lsi06G011420Watermelon (Charleston Gray)lsiwcgB379
Lsi06G011420Watermelon (97103) v1lsiwmB404
Lsi06G011420Watermelon (97103) v1lsiwmB421
Lsi06G011420Cucumber (Gy14) v2cgyblsiB071
Lsi06G011420Melon (DHL92) v3.6.1lsimedB423
Lsi06G011420Melon (DHL92) v3.6.1lsimedB444
Lsi06G011420Silver-seed gourdcarlsiB117
Lsi06G011420Silver-seed gourdcarlsiB461