Lsi06G011410 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G011410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 21684152 .. 21684460 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAATTCACCGCTGCTTAATTCCGATTGCTCTAATTTCTCTTCTCTTGCTTTCTGAATCTATCACTATATCCTCTGCTGATGCGAGTTCTTTCACCGGAATACTCCGCCGGAATATTCGAGAGGATAAGGATTCCGGCTCCTCTTTGGCCGACAAGATCAGTATCAAAAGAGGGGTTCGATCCGGCGTAATTTCAGGTCATTCCACTAGATCCTCCTCCAGCCGAGTGTCGTCGTCGTCGCCCTTTAATGTTGCCTCTGTTATTTGTTTCCACATAGCCTTTGCGTTTGTGTTCTTCTTCTGA

mRNA sequence

ATGGCTGCAATTCACCGCTGCTTAATTCCGATTGCTCTAATTTCTCTTCTCTTGCTTTCTGAATCTATCACTATATCCTCTGCTGATGCGAGTTCTTTCACCGGAATACTCCGCCGGAATATTCGAGAGGATAAGGATTCCGGCTCCTCTTTGGCCGACAAGATCAGTATCAAAAGAGGGGTTCGATCCGGCGTAATTTCAGGTCATTCCACTAGATCCTCCTCCAGCCGAGTGTCGTCGTCGTCGCCCTTTAATGTTGCCTCTGTTATTTGTTTCCACATAGCCTTTGCGTTTGTGTTCTTCTTCTGA

Coding sequence (CDS)

ATGGCTGCAATTCACCGCTGCTTAATTCCGATTGCTCTAATTTCTCTTCTCTTGCTTTCTGAATCTATCACTATATCCTCTGCTGATGCGAGTTCTTTCACCGGAATACTCCGCCGGAATATTCGAGAGGATAAGGATTCCGGCTCCTCTTTGGCCGACAAGATCAGTATCAAAAGAGGGGTTCGATCCGGCGTAATTTCAGGTCATTCCACTAGATCCTCCTCCAGCCGAGTGTCGTCGTCGTCGCCCTTTAATGTTGCCTCTGTTATTTGTTTCCACATAGCCTTTGCGTTTGTGTTCTTCTTCTGA

Protein sequence

MAAIHRCLIPIALISLLLLSESITISSADASSFTGILRRNIREDKDSGSSLADKISIKRGVRSGVISGHSTRSSSSRVSSSSPFNVASVICFHIAFAFVFFF
Homology
[Close]
BLAST of Lsi06G011410 vs. TrEMBL
Match: A0A0A0LYV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1 

Query: 2   AAIHRCLIPIALISLLLLSESI-TISSADASSFTGILRRNIREDKDSGSSLADKISIKRG 61
           AAIHR L+PIALISLLL SES+  ISS+D      I   N   DKDSG+SL +KISIKRG
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDH-----IQDSNRPGDKDSGTSLTEKISIKRG 62

Query: 62  VRSGVISGHSTRSSSSRVSSSSPFNVASVICFHIAFAFVFF 102
           VRSGVI+G ST SSS+RVSSSS FNV SVICF+IAF    F
Sbjct: 63  VRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMF 98

[Close]
BLAST of Lsi06G011410 vs. NCBI nr
Match: gi|700210080|gb|KGN65176.1| (hypothetical protein Csa_1G257330 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-18
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1 

Query: 2   AAIHRCLIPIALISLLLLSESI-TISSADASSFTGILRRNIREDKDSGSSLADKISIKRG 61
           AAIHR L+PIALISLLL SES+  ISS+D      I   N   DKDSG+SL +KISIKRG
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDH-----IQDSNRPGDKDSGTSLTEKISIKRG 62

Query: 62  VRSGVISGHSTRSSSSRVSSSSPFNVASVICFHIAFAFVFF 102
           VRSGVI+G ST SSS+RVSSSS FNV SVICF+IAF    F
Sbjct: 63  VRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMF 98

The following BLAST results are available for this feature:
BLAST of Lsi06G011410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G011410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYV9_CUCSA3.6e-1867.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257330 PE=4 SV=1[more]
BLAST of Lsi06G011410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G011410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210080|gb|KGN65176.1|5.1e-1867.33hypothetical protein Csa_1G257330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G011410.1Lsi06G011410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G011410CmaCh11G004510Cucurbita maxima (Rimu)cmalsiB131
Lsi06G011410Cla018745Watermelon (97103) v1lsiwmB421
Lsi06G011410ClCG06G012540Watermelon (Charleston Gray)lsiwcgB379
Lsi06G011410CsaV3_1G029110Cucumber (Chinese Long) v3cuclsiB085
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G011410Watermelon (97103) v2lsiwmbB372
Lsi06G011410Watermelon (97103) v2lsiwmbB380
Lsi06G011410Wax gourdlsiwgoB500
Lsi06G011410Wax gourdlsiwgoB503
Lsi06G011410Bottle gourd (USVL1VR-Ls)lsilsiB061
Lsi06G011410Cucumber (Gy14) v1cgylsiB440
Lsi06G011410Cucurbita maxima (Rimu)cmalsiB066
Lsi06G011410Cucurbita maxima (Rimu)cmalsiB447
Lsi06G011410Cucurbita moschata (Rifu)cmolsiB053
Lsi06G011410Cucurbita moschata (Rifu)cmolsiB121
Lsi06G011410Cucurbita pepo (Zucchini)cpelsiB307
Lsi06G011410Cucurbita pepo (Zucchini)cpelsiB567
Lsi06G011410Wild cucumber (PI 183967)cpilsiB075
Lsi06G011410Wild cucumber (PI 183967)cpilsiB301
Lsi06G011410Cucumber (Chinese Long) v2culsiB076
Lsi06G011410Cucumber (Chinese Long) v2culsiB301
Lsi06G011410Melon (DHL92) v3.5.1lsimeB402
Lsi06G011410Melon (DHL92) v3.5.1lsimeB424
Lsi06G011410Watermelon (Charleston Gray)lsiwcgB370
Lsi06G011410Watermelon (97103) v1lsiwmB404
Lsi06G011410Cucumber (Gy14) v2cgyblsiB071
Lsi06G011410Melon (DHL92) v3.6.1lsimedB423
Lsi06G011410Melon (DHL92) v3.6.1lsimedB444
Lsi06G011410Silver-seed gourdcarlsiB117
Lsi06G011410Silver-seed gourdcarlsiB461
Lsi06G011410Cucumber (Chinese Long) v3cuclsiB146
Lsi06G011410Cucumber (Chinese Long) v3cuclsiB321