Lsi06G011230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G011230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein PP2-B1
Location	chr06 : 21498358 .. 21501330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCATCTCGCTTCTTCCTCTCATTTCTTTCTTGTCAATTTTGTAATTTTTTCCTTTGAGTTTTATTCCTTCATTTGAATTCTCACTCTCGCTTCTTCCTCTTATTTATTTCTTGGTCTCTTCTTTCTCTCGTTCTGATTCACTTCTCAACTTACCTCTTTGATTCGAAAAAATAAGAGGGCCTGAAGGAAATCTCGCCGGAAAAATCAGAAAAAAAGAGGGTGACATAAATAGAAATCTCTAGGAAAGAAAAAAAAACGAAAATCGCCCGAAAAACAGAGGAAGACATAAACGAAAAAATCGCTGGAATTAAAAAAAGAAAAAAGAAGAAAAGAAGAAAAGCAGAAAAAATGAAAAAGAAAAAAGAGAAGGAAGAAAGATTACAATGGTAAATTCATCCTACAATGAGACGAGCAAAAGACCAAATTTCGAGCTTTTTCTTTCCTGTGTTTCTTCTTCGTTTCTTTCTTTTTTTTTGTTTGCGTTCTTTCTGCGTTTTTCTTCTAACTTCTTTTGTTTGTTTTTGCGTCCTCTTCCGTGTTTTATTTTCTTTCCTTTTCTTTCCTTCTTTGCGTTTTTATATGTGTTACTTCTTCTTCTTTTCGTATTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGCAATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAGATATTTTTCTCCCTTTGCGACAATCCAGTCCTAATTGATGACGGCAATAAGGTAAGCTTTCGGATTCCCCAATTTCTCTGAGTTGAAGGCGGCCGGAGTTGGATCAGTGGTCAACAACACACAACTCTGACTTCAGCCCTACCATCATCGGAAGTTTCTTTATTGTAACGATGGCTTCCAAATTGACCTTGGAGGCCCCATTTTATTCTTTATATCTACTAATCTATTCATTTTGTTAGATTCTACCTTTACACGTTATTTTAGAATATAAACACATTCTGAAAACTCAAAATTAGAAGTAAAAAAAGAGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCATTCTATCAGTGATAGACCGTGATAGAATTCTATCGCTTTCTATCGCTCAAGCAAATAAATTTTATCGCCTGAGCGATAGAAAGCGATAGAATTCTATCGCGATCTATTAGTGATAGACGGTAAAATTTTTCTATATTTGTAAATAGTTTGACTTATTTTTTTATATTTGAAAAGAGTCCTAAAAAAACTTCAAAACCCTTCTATCAACAAATAAGAAGGGCAAATTGCAAAAATTACTATGGTGGTAGTTGTTAGGAGTGCGAACAAAATCCCACATTAGTTAGGGAAGGAAGTGATATGGGTATATAAGTGAGGACAATTATTTCTATTGATATGAGACCTTTTGGGTGGTACTAAAAACAAAGCTACGAGGGTTTATGTCCAAAGTGAACAATATCATATCATTGTAGAGGTCTGTTGTCCTTATCAATAATTACACCCTCTAAACATTGAGTCTTCAAATTTATACAATTATTATAATTTTTAGACATTTGTACAAGGGTGATCCTATGTTGAGTGACCTCTTAGTAATTTTTCTAGAATGCATGTGAGTGAGAACAAAGCATGCTGAAAAGACCCATGATGGTTTGTGGGCATTCATGACAAGAAAGGATGGCGTAGCCGGGTTGCAAGGGAATGCCGGGACCAAGTGCCGAATCCAGATTTCGAATTCTGGTCCGAATCCTGGGCCTGGGGCGTTACAAGTTCTGTAATTATCTTGGATTCCAACAAAAACTCTTGCAATTATTTTTAAAAAGGTTCATCTCATTTGGATTTAGATTCTTCTTCATGTTTTGATTGGAAACTTTTGTTATCCTCTAGACTGGAGTTGCTGTTCCATTTTTTCTGGGTTAAAAACCTCTTGTTCTTGCTCCATCACCTTTTATTCTCTTAAACTCGACATAAATTGAGTGGAATCATTGGTATAAAGCTTTTTATGCACTTTAGAGGATTAACACTAAAGGTTTTGTGCACTTCATTATTAATTTCTTTTTTTTTACATAAATTGAATGGGTTGAATCATTGGTACATTACAGAGCTTGTCATTAGAAAAATGGAGTGGTAAAAAATGCATAATGCTTGGAGCAAGGGACCTCTCAGTTGTTTGGGGTGATACCCCTTTTTATTGGACCTGGGAACACCATCCTGATTCGAGGTTCAAAGTCTATGAGATATGAGCAAATCGTATTCCCCTCCCAATTCTAATACTCTGCTTTTTTAATGTGAATGTGTGGAATCAGATTTGCAGGGGTAGCTGTACTCCAAAATGTATGGTGGCTTGAAATACGTGGAAGAATAAGTTGCAGAATGTTATCTCATAAAACAACTTATGCAATTTACTTTGTATTCAAGATGATGCGACATAGTTACTATGGGTTCGATATTGATCCTGCTGAGGCCGCAGTGGGAATTCTTGGAACTGAAAACCATCGGAAAAGTGTTTGTTTGGACCCTTATTTGAACAATCCTCGACCGGAGTACGATGATGAACCATTTATGATGTGGCCTCGGTCTGAAGACATGTCAGGATTCGAGCAGCCACAGGAGAGACATGATGGTTGGTTTGAAATTGAGTTGGGAGAGTTTGAAAGTAGTGATGGAGATGATGAAATTGAGATGAGTCTTATGGAGGTGAAAGGCACTACTGATAAGATTGGTCTTGTTGTTGAGGGGATTGAGATTAGGCCTAAACTCATGTTGTA

mRNA sequence

TTCTCATCTCGCTTCTTCCTCTCATTTCTTTCTTGTCAATTTTGTAATTTTTTCCTTTGAGTTTTATTCCTTCATTTGAATTCTCACTCTCGCTTCTTCCTCTTATTTATTTCTTGGTCTCTTCTTTCTCTCGTTCTGATTCACTTCTCAACTTACCTCTTTGATTCGAAAAAATAAGAGGGCCTGAAGGAAATCTCGCCGGAAAAATCAGAAAAAAAGAGGGTGACATAAATAGAAATCTCTAGGAAAGAAAAAAAAACGAAAATCGCCCGAAAAACAGAGGAAGACATAAACGAAAAAATCGCTGGAATTAAAAAAAGAAAAAAGAAGAAAAGAAGAAAAGCAGAAAAAATGAAAAAGAAAAAAGAGAAGGAAGAAAGATTACAATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAGATATTTTTCTCCCTTTGCGACAATCCAGTCCTAATTGATGACGGCAATAAGAATGCATGTGAGTGAGAACAAAGCATGCTGAAAAGACCCATGATGGTTTGTGGGCATTCATGACAAGAAAGGATGGCGTAGCCGGGTTGCAAGGGAATGCCGGGACCAAGTGCCGAATCCAGATTTCGAATTCTGGTCCGAATCCTGGGCCTGGGGCGTTACAAGTTCTGTAATTATCTTGGATTCCAACAAAAACTCTTGCAATTATTTTTAAAAAGAGCTTGTCATTAGAAAAATGGAGTGGTAAAAAATGCATAATGCTTGGAGCAAGGGACCTCTCAGTTGTTTGGGGTGATACCCCTTTTTATTGGACCTGGGAACACCATCCTGATTCGAGATTTGCAGGGGTAGCTGTACTCCAAAATGTATGGTGGCTTGAAATACGTGGAAGAATAAGTTGCAGAATGTTATCTCATAAAACAACTTATGCAATTTACTTTGTATTCAAGATGATGCGACATAGTTACTATGGGTTCGATATTGATCCTGCTGAGGCCGCAGTGGGAATTCTTGGAACTGAAAACCATCGGAAAAGTGTTTGTTTGGACCCTTATTTGAACAATCCTCGACCGGAGTACGATGATGAACCATTTATGATGTGGCCTCGGTCTGAAGACATGTCAGGATTCGAGCAGCCACAGGAGAGACATGATGGTTGGTTTGAAATTGAGTTGGGAGAGTTTGAAAGTAGTGATGGAGATGATGAAATTGAGATGAGTCTTATGGAGGTGAAAGGCACTACTGATAAGATTGGTCTTGTTGTTGAGGGGATTGAGATTAGGCCTAAACTCATGTTGTA

Coding sequence (CDS)

ATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG

Protein sequence

MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK

Homology

[Close]

BLAST of Lsi06G011230 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 18 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 75
          L SLPEG I+ I+S TSP D C ++AVS+ F +  +SDI W++FLPTD+  LI+P +
Sbjct: 24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSR 80

[Close]

BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 9  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNV 68
          +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  
Sbjct: 5  RRVKSESSPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYES 64

Query: 69 LISPRK 75
          LI P +
Sbjct: 65 LIPPSR 70

[Close]

BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 18 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW 67
          +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Sbjct: 1  MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADF 49

[Close]

BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 21 LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 71
          LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Sbjct: 6  LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYI 55

[Close]

BLAST of Lsi06G011230 vs. Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-08
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 20  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 75
           +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Sbjct: 49  NLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR 103

[Close]

BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LUI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 2  MEEETWMQR--EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWD 61
          ME+E+ M+   ED +I  LS LPEGVIA +LS T+P D C ++AVSR FNA AQSD  WD
Sbjct: 6  MEQESRMESDGEDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWD 65

Query: 62 RFLPTDWNVLISPRKSVEQNVDPISSSKK 89
          RFLP DW+VLIS RKS     DP+SSSKK
Sbjct: 66 RFLPPDWDVLISYRKS----FDPLSSSKK 90

[Close]

BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 2  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 61
          MEEE   ++ +G I+  SSLPEGV+A ILS T+P D CRSS VS  F A AQSDI WD F
Sbjct: 1  MEEE---EKGEG-ISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDSF 60

Query: 62 LPTDWNVLISPRKSVEQNVDPISSSKK 89
          LPTDW +LIS RK    N DPISSSKK
Sbjct: 61 LPTDWEILISRRKPSNLNFDPISSSKK 83

[Close]

BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.0e-18
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 8  MQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWN 67
          M+ ++G+  H SSLPEGVIA ILSLT+P DVCRSSAVSR F+A AQSDI WD FLP D +
Sbjct: 1  MEGKEGR-THFSSLPEGVIANILSLTTPLDVCRSSAVSRAFHAAAQSDIVWDTFLPNDLD 60

Query: 68 VLISPRKSVEQNVDPISSSKK 89
            IS  K    N DPI+SSKK
Sbjct: 61 DFISRSKPGGLNFDPITSSKK 80

[Close]

BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-15
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 11 EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 70
          E  +++  SSLPEGV+A ILSLT+P D C SSAVS+ F+A AQSDI W++FLPTDW + I
Sbjct: 11 EGEQLSDFSSLPEGVVAKILSLTTPPDACVSSAVSKIFHAAAQSDIVWNQFLPTDWELFI 70

Query: 71 SPRKSVEQNVDPISSSKK 89
          S     +   DPI S KK
Sbjct: 71 SRSNPNKLKFDPIFSPKK 88

[Close]

BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1


Query: 4  EETWMQREDGK---IAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDR 63
          E  W +R + +   +   SSLPEGVIA ILSLTSP D CR SAVS  F+A AQSD+AW+R
Sbjct: 12 EREWEKRSESEGKEMVEFSSLPEGVIANILSLTSPLDNCRLSAVSWTFHAAAQSDVAWER 71

Query: 64 FLPTDWNVLISPRKSVEQNVDPISSSKK 89
          F+P+D+++LIS        ++P SSSKK
Sbjct: 72 FIPSDYHLLIS-------RMNPTSSSKK 92

[Close]

BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02360.1 (AT2G02360.1 phloem protein 2-B10)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 9  QREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNV 68
          +R   + +   S PE  I+YI+S T+P D C ++ VS+ F +T +SDI W++FLP D+  
Sbjct: 5  RRVKSESSPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYES 64

Query: 69 LISPRK 75
          LI P +
Sbjct: 65 LIPPSR 70

[Close]

BLAST of Lsi06G011230 vs. TAIR10
Match: AT1G80110.1 (AT1G80110.1 phloem protein 2-B11)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 18 LSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDW 67
          +++LPE  IA ILSLT+P DVCR SAVS  F + A SD  W+ FLP D+
Sbjct: 1  MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADF 49

[Close]

BLAST of Lsi06G011230 vs. TAIR10
Match: AT5G24560.1 (AT5G24560.1 phloem protein 2-B12)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 21 LPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 71
          LPE  IA ++S TSPFD CR SAVS+   + A S+  W+RFLP+D+ + I
Sbjct: 6  LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYI 55

[Close]

BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02250.1 (AT2G02250.1 phloem protein 2-B2)

HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 20  SLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 75
           +LPE  I+ I+S TSP D C +++VS+ F +   SD  WD+FLP+D++ L+ P +
Sbjct: 49  NLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR 103

[Close]

BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02340.1 (AT2G02340.1 phloem protein 2-B8)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 15 IAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRK 74
          +A L  LPE  ++ I+S TSP D C  ++VS+ F +  +SDI W++F+P ++  LIS  +
Sbjct: 33 VAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSR 92

Query: 75 S 76
          +
Sbjct: 93 A 93

[Close]

BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|778660698|ref|XP_011656739.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 2  MEEETWMQR--EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWD 61
          ME+E+ M+   ED +I  LS LPEGVIA +LS T+P D C ++AVSR FNA AQSD  WD
Sbjct: 6  MEQESRMESDGEDQEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWD 65

Query: 62 RFLPTDWNVLISPRKSVEQNVDPISSSKK 89
          RFLP DW+VLIS RKS     DP+SSSKK
Sbjct: 66 RFLPPDWDVLISYRKS----FDPLSSSKK 90

[Close]

BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|449457133|ref|XP_004146303.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 2  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 61
          MEEE   ++ +G I+  SSLPEGV+A ILS T+P D CRSS VS  F A AQSDI WD F
Sbjct: 1  MEEE---EKGEG-ISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDSF 60

Query: 62 LPTDWNVLISPRKSVEQNVDPISSSKK 89
          LPTDW +LIS RK    N DPISSSKK
Sbjct: 61 LPTDWEILISRRKPSNLNFDPISSSKK 83

[Close]

BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 54/87 (62.07%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 2  MEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRF 61
          MEEE     +  +I+  SSLPEGV+A ILS T+P D CRSS VS  F A AQSDI WD F
Sbjct: 1  MEEE----EKGEEISDFSSLPEGVVAKILSFTTPSDACRSSVVSTTFVAAAQSDIVWDSF 60

Query: 62 LPTDWNVLISPRKSVEQNVDPISSSKK 89
          LPTDW +LIS RK    N DPISSSKK
Sbjct: 61 LPTDWEILISRRKPSNLNFDPISSSKK 83

[Close]

BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|659107347|ref|XP_008453628.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 11 EDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLI 70
          ED +I  LS LPEGVIA +LS T+P D C ++AVSR FNA AQSD  WDRFLP DW+VLI
Sbjct: 6  EDEEIGDLSFLPEGVIANVLSFTTPIDACTAAAVSRVFNAAAQSDFVWDRFLPPDWDVLI 65

Query: 71 SPRKSVEQNVDPISSSKK 89
          S RKS     DP+SSSKK
Sbjct: 66 SHRKS----FDPLSSSKK 79

[Close]

BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|778660690|ref|XP_004146304.2| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 8  MQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWN 67
          M+ ++G+  H SSLPEGVIA ILSLT+P DVCRSSAVSR F+A AQSDI WD FLP D +
Sbjct: 1  MEGKEGR-THFSSLPEGVIANILSLTTPLDVCRSSAVSRAFHAAAQSDIVWDTFLPNDLD 60

Query: 68 VLISPRKSVEQNVDPISSSKK 89
            IS  K    N DPI+SSKK
Sbjct: 61 DFISRSKPGGLNFDPITSSKK 80

The following BLAST results are available for this feature:

BLAST of Lsi06G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKIP3_ARATH	4.0e-11	52.63	F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2	[more]
P2B10_ARATH	2.9e-09	40.91	F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1	[more]
P2B11_ARATH	2.4e-08	57.14	F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1	[more]
P2B12_ARATH	2.4e-08	52.00	Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1	[more]
PP2B2_ARATH	7.1e-08	43.64	Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2	[more]

BLAST of Lsi06G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUI2_CUCSA	2.8e-19	61.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1	[more]
A0A0A0LWS1_CUCSA	1.1e-18	63.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1	[more]
A0A0A0LU29_CUCSA	9.0e-18	64.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1	[more]
A0A0A0LX65_CUCSA	5.4e-15	56.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1	[more]
A0A0A0LZQ3_CUCSA	2.1e-14	53.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1	[more]

BLAST of Lsi06G011230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02360.1	1.6e-10	40.91	phloem protein 2-B10	[more]
AT1G80110.1	1.4e-09	57.14	phloem protein 2-B11	[more]
AT5G24560.1	1.4e-09	52.00	phloem protein 2-B12	[more]
AT2G02250.1	4.0e-09	43.64	phloem protein 2-B2	[more]
AT2G02340.1	1.2e-08	39.34	phloem protein 2-B8	[more]

BLAST of Lsi06G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660698\|ref\|XP_011656739.1\|	4.0e-19	61.80	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]
gi\|449457133\|ref\|XP_004146303.1\|	1.5e-18	63.22	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]
gi\|659107353\|ref\|XP_008453631.1\|	1.5e-18	62.07	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|659107347\|ref\|XP_008453628.1\|	2.6e-18	65.38	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|778660690\|ref\|XP_004146304.2\|	1.3e-17	64.20	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G011230.1	Lsi06G011230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 17..61 score: 5.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 15..61 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 11..78 score: 3.74
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 14..69 score: 2.
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 9..88 score: 4.5
None	No IPR available	PANTHER	PTHR32278:SF6	F-BOX PROTEIN PP2-B1-RELATED	coord: 9..88 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G011230	Cucumber (Chinese Long) v3	cuclsiB076
Lsi06G011230	Cucumber (Chinese Long) v3	cuclsiB146
Lsi06G011230	Watermelon (97103) v2	lsiwmbB376
Lsi06G011230	Wax gourd	lsiwgoB475
Lsi06G011230	Wax gourd	lsiwgoB523
Lsi06G011230	Bottle gourd (USVL1VR-Ls)	lsilsiB061
Lsi06G011230	Cucumber (Gy14) v1	cgylsiB102
Lsi06G011230	Cucumber (Gy14) v1	cgylsiB105
Lsi06G011230	Cucurbita maxima (Rimu)	cmalsiB077
Lsi06G011230	Cucurbita maxima (Rimu)	cmalsiB148
Lsi06G011230	Cucurbita moschata (Rifu)	cmolsiB063
Lsi06G011230	Cucurbita moschata (Rifu)	cmolsiB132
Lsi06G011230	Cucurbita pepo (Zucchini)	cpelsiB303
Lsi06G011230	Cucurbita pepo (Zucchini)	cpelsiB558
Lsi06G011230	Wild cucumber (PI 183967)	cpilsiB065
Lsi06G011230	Wild cucumber (PI 183967)	cpilsiB135
Lsi06G011230	Cucumber (Chinese Long) v2	culsiB063
Lsi06G011230	Cucumber (Chinese Long) v2	culsiB135
Lsi06G011230	Melon (DHL92) v3.5.1	lsimeB400
Lsi06G011230	Melon (DHL92) v3.5.1	lsimeB417
Lsi06G011230	Watermelon (Charleston Gray)	lsiwcgB374
Lsi06G011230	Watermelon (97103) v1	lsiwmB416
Lsi06G011230	Cucumber (Gy14) v2	cgyblsiB061
Lsi06G011230	Cucumber (Gy14) v2	cgyblsiB124
Lsi06G011230	Melon (DHL92) v3.6.1	lsimedB422
Lsi06G011230	Silver-seed gourd	carlsiB541
Lsi06G011230	Silver-seed gourd	carlsiB727