Lsi06G010980 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGHGYGEGHGYGSGGEN
BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G287000 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 6.0e-26 Identity = 98/134 (73.13%), Postives = 104/134 (77.61%), Query Frame = 1
BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25 Identity = 103/152 (67.76%), Postives = 114/152 (75.00%), Query Frame = 1
BLAST of Lsi06G010980 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 6.2e-23 Identity = 92/131 (70.23%), Postives = 107/131 (81.68%), Query Frame = 1
BLAST of Lsi06G010980 vs. TrEMBL
Match: A5AIY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.8e-22 Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = 1
BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LW94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21 Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1
BLAST of Lsi06G010980 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18 Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 1
BLAST of Lsi06G010980 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein) HSP 1 Score: 77.4 bits (189), Expect = 7.2e-15 Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 1
BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|659086207|ref|XP_008443812.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]) HSP 1 Score: 156.0 bits (393), Expect = 4.5e-35 Identity = 116/140 (82.86%), Postives = 121/140 (86.43%), Query Frame = 1
BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|778660329|ref|XP_011656035.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]) HSP 1 Score: 125.2 bits (313), Expect = 8.6e-26 Identity = 98/134 (73.13%), Postives = 104/134 (77.61%), Query Frame = 1
BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus]) HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25 Identity = 103/152 (67.76%), Postives = 114/152 (75.00%), Query Frame = 1
BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|659086209|ref|XP_008443813.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]) HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25 Identity = 101/151 (66.89%), Postives = 114/151 (75.50%), Query Frame = 1
BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|225433418|ref|XP_002285648.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Vitis vinifera]) HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23 Identity = 92/131 (70.23%), Postives = 107/131 (81.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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