Lsi06G010980 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G010980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 21246521 .. 21246916 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

mRNA sequence

ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

Coding sequence (CDS)

ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

Protein sequence

MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGHGYGEGHGYGSGGEN
BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.0e-26
Identity = 98/134 (73.13%), Postives = 104/134 (77.61%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR+VA+V FLLG+SVIVSESRVAR DLGLDLG VGLGVGTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGH--- 120
           GSGSSSAS S S                  SYAGS  GSGSGRNRNGGSGSG G G+   
Sbjct: 61  GSGSSSASLSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE 116

Query: 121 GYGEGHGYGSGGEN 132
           GYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGNGGEN 116

BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 103/152 (67.76%), Postives = 114/152 (75.00%), Query Frame = 1

Query: 1   MASIRAVAIVA-FLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSG 60
           MASI+++AIV   LL  S I+SE RVAR DLG+DLG VG+G+GTG+GLG+G    GSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGS------ 120
           SGSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NRNGGS      
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 -------------GSGYGEGHGYGEGHGYGSG 129
                        G GYGEGHGYGEG GYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

BLAST of Lsi06G010980 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-23
Identity = 92/131 (70.23%), Postives = 107/131 (81.68%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MA +R++A+VA L+   V+VS+SRVAR DLGLDLG VG+G+G GVGLGLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGLDLGGVGVGLGVGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSS---QSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGH 120
           GSGS S +SS    +SSS SGS +GSEAGSYAGSYAGSR+GSGSG N+  GSGSG G+GH
Sbjct: 61  GSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQGH 120

Query: 121 GYGEGHGYGSG 129
           G G G G GSG
Sbjct: 121 GQGSGSGSGSG 131

BLAST of Lsi06G010980 vs. TrEMBL
Match: A5AIY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-22
Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MA +R++A+VA L+   V+VS+SRVAR DLG+DLG VG+GVG GVGLGLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGVDLGGVGVGVGIGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSQS-----SSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGE 120
           GSGS S S + S     SSS SGS +GSEAGSYAGSYAGSR+GSGSG N+  GSGSG G+
Sbjct: 61  GSGSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQ 120

Query: 121 GHGYGEGHGYGSG 129
           GHG G G G GSG
Sbjct: 121 GHGQGSGSGSGSG 133

BLAST of Lsi06G010980 vs. TrEMBL
Match: A0A0A0LW94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSES-RVARMDLGLDLGRVGLGVGTGVGLGLGG-----SGS 60
           MASI+A+A++  +L +SVI SE+ RVAR DLGLDLG +G+G+G G+GLGLGG     +G+
Sbjct: 1   MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSGSSSASSSQSSSSS-SGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGY 120
           GSGSGSGSGS S+SSS SSSSS  GS AGSEAGSYAGSYAGSR+GSGSG +RNG SG   
Sbjct: 61  GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG-SRNGASG--- 120

Query: 121 GEGHGYGEGHGYGSGGEN 132
           GEGHGYGEGHGYG GG N
Sbjct: 121 GEGHGYGEGHGYGEGGNN 134

BLAST of Lsi06G010980 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18
Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 1

Query: 6   AVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSG-- 65
           ++ ++  +L  SV+VSESRVAR DLGLDLG +G G+G G+G+G GGSGSG+G+GSGSG  
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  --SSSASSSQSSSSSS---GSDAGSEAGSYAGSYAGSRSG--SGSGRNRNGGSGSGYGEG 125
             SSS+SSS SSSSSS   G DAGSEAGSYAGS+AGS SG  SGSGR R  G G G+G G
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

Query: 126 HGYGEGHGYGSGGEN 132
            G G G G G G  N
Sbjct: 129 GGGGGGRGGGGGSGN 143

BLAST of Lsi06G010980 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-15
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 1

Query: 12  FLLGLSVIVS-----ESRVARMDLGLDLGRVGLGVGTGVGLGLGG---SGSGSGSGSGSG 71
           FLLGL VI S     ESR+AR DLG+DLG +G+G+G G+G+GLGG   SG+G+GSGSGSG
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSG 103
           S S+SSS SSSSSS S +G  AGS AGS+AGSR+GSGSG
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|659086207|ref|XP_008443812.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-35
Identity = 116/140 (82.86%), Postives = 121/140 (86.43%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR VA+V FLLG+SVIVSESRVAR DLGLDLG +GLGVGTGVGLGL   GSGSG GS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL--DGSGSGFGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS--------- 120
           G GSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSGSGRNRNGGSGS         
Sbjct: 61  GPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGE 120

Query: 121 GYGEGHGYGEGHGYGSGGEN 132
           GYGEGHGYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGEGHGYGNGGEN 138

BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|778660329|ref|XP_011656035.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.6e-26
Identity = 98/134 (73.13%), Postives = 104/134 (77.61%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR+VA+V FLLG+SVIVSESRVAR DLGLDLG VGLGVGTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGH--- 120
           GSGSSSAS S S                  SYAGS  GSGSGRNRNGGSGSG G G+   
Sbjct: 61  GSGSSSASLSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE 116

Query: 121 GYGEGHGYGSGGEN 132
           GYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGNGGEN 116

BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25
Identity = 103/152 (67.76%), Postives = 114/152 (75.00%), Query Frame = 1

Query: 1   MASIRAVAIVA-FLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSG 60
           MASI+++AIV   LL  S I+SE RVAR DLG+DLG VG+G+GTG+GLG+G    GSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGS------ 120
           SGSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NRNGGS      
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 -------------GSGYGEGHGYGEGHGYGSG 129
                        G GYGEGHGYGEG GYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|659086209|ref|XP_008443813.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25
Identity = 101/151 (66.89%), Postives = 114/151 (75.50%), Query Frame = 1

Query: 1   MASIRAVA-IVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSG 60
           MASI+++A +V  LL  SV +SE RVAR DLG+DLG +G+G+G G+GLG+G    GSGSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGS------ 120
           SGSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NRNGGS      
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 ------------GSGYGEGHGYGEGHGYGSG 129
                       G GYGEGHGYGEGHGYG G
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGHGYGGG 151

BLAST of Lsi06G010980 vs. NCBI nr
Match: gi|225433418|ref|XP_002285648.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Vitis vinifera])

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 92/131 (70.23%), Postives = 107/131 (81.68%), Query Frame = 1

Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MA +R++A+VA L+   V+VS+SRVAR DLGLDLG VG+G+G GVGLGLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGLDLGGVGVGLGVGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSS---QSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGH 120
           GSGS S +SS    +SSS SGS +GSEAGSYAGSYAGSR+GSGSG N+  GSGSG G+GH
Sbjct: 61  GSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQGH 120

Query: 121 GYGEGHGYGSG 129
           G G G G GSG
Sbjct: 121 GQGSGSGSGSG 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LZ57_CUCSA6.0e-2673.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G287000 PE=4 SV=1[more]
A0A0A0LTK9_CUCSA1.3e-2567.76Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1[more]
F6HS59_VITVI6.2e-2370.23Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=... [more]
A5AIY9_VITVI1.8e-2269.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1[more]
A0A0A0LW94_CUCSA1.2e-2170.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278490 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G30460.13.1e-1862.22 glycine-rich protein[more]
AT4G30450.17.2e-1566.67 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|659086207|ref|XP_008443812.1|4.5e-3582.86PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
gi|778660329|ref|XP_011656035.1|8.6e-2673.13PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
gi|778660326|ref|XP_004146660.2|1.9e-2567.76PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
gi|659086209|ref|XP_008443813.1|1.9e-2566.89PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
gi|225433418|ref|XP_002285648.1|8.9e-2370.23PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Vitis vi... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010980.1Lsi06G010980.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..129
score: 1.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None