Lsi06G010350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G010350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 20493737 .. 20495554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCAAGTCTATGAGCACATCCACAATAAAGATATCACTTATATTACTAGTATGCATAGCTATTTTTGCACCATCAGCGACGGCTCGTACGATGGCAGCAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCGCACCGTTTATCTTAGAGGCAACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAACGACTGCTCTCCCGAAATTTACCAACATATTCCTGGCATAGATGTGATTAAGAAATTTTGTGGTCAGTGAGACATTTTCGATTTTTTAGACTAAGAGGTTCTCGAGGCTAATTGAACCAGGATGGATAATAAAGTTATATGATTTCTTTTTCCTACAGTACTATGTTGTTATAAATTTATGATGGAGAGTGAATGTTGTTTGAGAGAAATTATGTTTCCTATGAATGAGAATGAACATTTCTCACCATTTGTTGAAGGTCATTTTCAAAATGGTATTTAAAAATATATATGCACAAAAAAAAATCAACAAACAAAAACAAAACCTGAAAACAAAAATAAAAACAAAAACATGTCCCACCTTCCCTCCAAATGAGAATTTCTCGTATAAAGTTGACAGTTAAATTTCTGACTGTACCATGTCAATTTTGGAAATTATTATTAAGATAATAATATGTTTTCAATAATGTTCAGAAGTCATAGGTTTGGAGGATTTGGCAAATGTTTGGTACAAGGAACAATTATTGACATTGTTATAAACTATTGACTTACCTTTGTTGATTTTGTGATTTCTGTGGTTGTTTGCTCGTTGAAATTATTATATTATTTAAGGTTGTGTGATCTGAAATTAATATGATTAGCCACACTGTTATGTCTCTCTTTCTAGTGCATTAGCTCTCAACTTTATAATTAACATTTACTGTTTTGTTTAAGGTTGGAGGTTTAAATCTCTGTTCCTACATTGTTGTACTCAAAAGAAGAAGAAAAAAACTTTACTCGGATAAAAATAATATAATTTAAATTAATATATTTATTATCTTAGCCAAATTAGCAAAATCAAATCAAATGACTTAAGATGCCTTTTGAAACCATACGTCTCCATCCCTATAAAATTTCTCCCAACAGTATACTTTTGCCATATATATATTGAGTTTTTTTTTTTTTAGCATATATATATTTTTATTCAACATTATGATTATGAATGTTTTTCGTTAAAATTAAAAAGGAAAAAAAAAACTCCAAATAATGTAACTTGTACAACATTATGATGCTATACTTAAGCCCAAAATTTTGTAACTCCAAAAAGTCCAAAGTTAACATAAAAAGAATTGCAATTTTCATGGATGTCAAACGTTTCAAACTTCATATGTTTCCCTATATCTAACCTCCTCAGCCTCTAGTTTTCTCCCACAAACTCCTTCTCTTAACCTTTATACTAAATTTAGTACCAACAATGACAACAACACCCACCAAGTTACCACTTGTACTTCTACTCTGCTTTGCCATTTTAGCATCATCATCGATAACGGCTCGCTCAAAAACGATGCCAACAGTAGCGCCTGATCCATTTGTAACTGAGGATTTCTCTTTGTTCTCCTGCATATCATTTGTTTCTGAGGCAACAAAATGTATGATTGATGTGCTTAAGCACGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCACCCGAGTTTCTCAAAGGCATTCCCTCTACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

mRNA sequence

ATGGAGACCAAGTCTATGAGCACATCCACAATAAAGATATCACTTATATTACTAGTATGCATAGCTATTTTTGCACCATCAGCGACGGCTCGTACGATGGCAGCAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCGCACCGTTTATCTTAGAGGCAACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAACGACTGCTCTCCCGAAATTTACCAACATATTCCTGGCATAGATGTGATTAAGAAATTTTGTGTACCAACAATGACAACAACACCCACCAAGTTACCACTTGTACTTCTACTCTGCTTTGCCATTTTAGCATCATCATCGATAACGGCTCGCTCAAAAACGATGCCAACAGTAGCGCCTGATCCATTTGTAACTGAGGATTTCTCTTTGTTCTCCTGCATATCATTTGTTTCTGAGGCAACAAAATGTATGATTGATGTGCTTAAGCACGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCACCCGAGTTTCTCAAAGGCATTCCCTCTACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

Coding sequence (CDS)

ATGGAGACCAAGTCTATGAGCACATCCACAATAAAGATATCACTTATATTACTAGTATGCATAGCTATTTTTGCACCATCAGCGACGGCTCGTACGATGGCAGCAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCGCACCGTTTATCTTAGAGGCAACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAACGACTGCTCTCCCGAAATTTACCAACATATTCCTGGCATAGATGTGATTAAGAAATTTTGTGTACCAACAATGACAACAACACCCACCAAGTTACCACTTGTACTTCTACTCTGCTTTGCCATTTTAGCATCATCATCGATAACGGCTCGCTCAAAAACGATGCCAACAGTAGCGCCTGATCCATTTGTAACTGAGGATTTCTCTTTGTTCTCCTGCATATCATTTGTTTCTGAGGCAACAAAATGTATGATTGATGTGCTTAAGCACGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCACCCGAGTTTCTCAAAGGCATTCCCTCTACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCTATTTCTTAG

Protein sequence

METKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLVPEDLSFSNCAPFILEATMCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKKFCVPTMTTTPTKLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWGVSIS
Homology
[Close]
BLAST of Lsi06G010350 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-33
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 1 

Query: 3   TKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLV----PEDLSFSNCAPFILEAT 62
           TKS S STI+++++ LVCI I APS TARTMA APSP++     +D SFSNCAPFILEAT
Sbjct: 4   TKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEAT 63

Query: 63  MCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKKFC 104
           MCVV VIKLP   HPSCCKAIS+LNDC+P+IYQHIP +DVIKK C
Sbjct: 64  MCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKIC 108

[Close]
BLAST of Lsi06G010350 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 65/110 (59.09%), Postives = 72/110 (65.45%), Query Frame = 1 

Query: 110 TPT-KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMID 169
           TPT KL LV + C AI A  +   +    PT  P PF TED S F C SFV EATKCMID
Sbjct: 8   TPTMKLILVFICCTAIFAPPAAAMKVAMAPT-QPQPFPTEDISFFPCFSFVPEATKCMID 67

Query: 170 VLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWGVSIS 219
           V KH +A HP+CCKAI+KL  CS  F  GIPS DMI+IK VC  WG SIS
Sbjct: 68  VFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of Lsi06G010350 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 113 KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKH 172
           KLP++ L+C AILA   +T  + T+     D F T+D +  +C  F  EATKCMIDV+K+
Sbjct: 6   KLPIIFLVCIAILALPVMTRTTTTL-----DQFSTKDVASVNCTVFTFEATKCMIDVMKN 65

Query: 173 AVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWG 215
           ++ PHPSCC+AI KL DC+PE  K +PSTD  LIK +C +WG
Sbjct: 66  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]
BLAST of Lsi06G010350 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 3.2e-33
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 1 

Query: 3   TKSMSTSTIKISLILLVCIAIFAPSATARTMAAAPSPLV----PEDLSFSNCAPFILEAT 62
           TKS S STI+++++ LVCI I APS TARTMA APSP++     +D SFSNCAPFILEAT
Sbjct: 4   TKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEAT 63

Query: 63  MCVVSVIKLPTGPHPSCCKAISELNDCSPEIYQHIPGIDVIKKFC 104
           MCVV VIKLP   HPSCCKAIS+LNDC+P+IYQHIP +DVIKK C
Sbjct: 64  MCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKIC 108

[Close]
BLAST of Lsi06G010350 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 65/110 (59.09%), Postives = 72/110 (65.45%), Query Frame = 1 

Query: 110 TPT-KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMID 169
           TPT KL LV + C AI A  +   +    PT  P PF TED S F C SFV EATKCMID
Sbjct: 8   TPTMKLILVFICCTAIFAPPAAAMKVAMAPT-QPQPFPTEDISFFPCFSFVPEATKCMID 67

Query: 170 VLKHAVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWGVSIS 219
           V KH +A HP+CCKAI+KL  CS  F  GIPS DMI+IK VC  WG SIS
Sbjct: 68  VFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of Lsi06G010350 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 113 KLPLVLLLCFAILASSSITARSKTMPTVAPDPFVTEDFSLFSCISFVSEATKCMIDVLKH 172
           KLP++ L+C AILA   +T  + T+     D F T+D +  +C  F  EATKCMIDV+K+
Sbjct: 6   KLPIIFLVCIAILALPVMTRTTTTL-----DQFSTKDVASVNCTVFTFEATKCMIDVMKN 65

Query: 173 AVAPHPSCCKAIAKLYDCSPEFLKGIPSTDMILIKGVCAMWG 215
           ++ PHPSCC+AI KL DC+PE  K +PSTD  LIK +C +WG
Sbjct: 66  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

The following BLAST results are available for this feature:
BLAST of Lsi06G010350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G010350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD6_CUCSA2.2e-3370.48Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA7.6e-2659.09Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA7.4e-2150.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
BLAST of Lsi06G010350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G010350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210094|gb|KGN65190.1|3.2e-3370.48hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|1.1e-2559.09hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|1.1e-2050.98hypothetical protein Csa_1G263980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010350.1Lsi06G010350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G010350Bottle gourd (USVL1VR-Ls)lsilsiB057
Lsi06G010350Cucurbita maxima (Rimu)cmalsiB031
Lsi06G010350Cucurbita maxima (Rimu)cmalsiB147
Lsi06G010350Cucurbita moschata (Rifu)cmolsiB019
Lsi06G010350Cucurbita moschata (Rifu)cmolsiB131
Lsi06G010350Cucurbita pepo (Zucchini)cpelsiB300
Lsi06G010350Cucurbita pepo (Zucchini)cpelsiB557
Lsi06G010350Cucurbita pepo (Zucchini)cpelsiB565
Lsi06G010350Cucurbita pepo (Zucchini)cpelsiB643
Lsi06G010350Watermelon (Charleston Gray)lsiwcgB354
Lsi06G010350Watermelon (Charleston Gray)lsiwcgB371
Lsi06G010350Watermelon (Charleston Gray)lsiwcgB373
Lsi06G010350Watermelon (97103) v1lsiwmB405
Lsi06G010350Watermelon (97103) v1lsiwmB415
Lsi06G010350Cucumber (Gy14) v2cgyblsiB063
Lsi06G010350Silver-seed gourdcarlsiB115
Lsi06G010350Silver-seed gourdcarlsiB578
Lsi06G010350Cucumber (Chinese Long) v3cuclsiB073
Lsi06G010350Wax gourdlsiwgoB518