Lsi06G008360 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTGATCTTCTTTTTCACTAGCCTACGTGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACAGTCACAATTGTCAACCAAATTGAATACGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTACTGCAACTTCGTATGGACTGGACAACACCAAATATACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAGAACCCAAAAACTGCCGACGGCAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAGCAAGCATTATGAAATGA ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTGATCTTCTTTTTCACTAGCCTACGTGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACAGTCACAATTGTCAACCAAATTGAATACGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTACTGCAACTTCGTATGGACTGGACAACACCAAATATACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAGAACCCAAAAACTGCCGACGGCAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAGCAAGCATTATGAAATGA ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTGATCTTCTTTTTCACTAGCCTACGTGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACAGTCACAATTGTCAACCAAATTGAATACGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTACTGCAACTTCGTATGGACTGGACAACACCAAATATACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAGAACCCAAAAACTGCCGACGGCAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAGCAAGCATTATGAAATGA MASSPALALSLLIFFFTSLRAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVHTLPLGQSYSFKFRPNLVGTTLFYCNFVWTGQHQIYWFDVFNHKRDAGLCTTCQWIIHEYSICLQNPKTADGKQICYNYGDKEPASIMK
BLAST of Lsi06G008360 vs. TrEMBL
Match: B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23 Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 1
BLAST of Lsi06G008360 vs. TrEMBL
Match: B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22 Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1
BLAST of Lsi06G008360 vs. TrEMBL
Match: V4S4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21 Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 1
BLAST of Lsi06G008360 vs. TrEMBL
Match: B9RWP2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023130 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20 Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 1
BLAST of Lsi06G008360 vs. TrEMBL
Match: A0A067DXH5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045924mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
BLAST of Lsi06G008360 vs. TAIR10
Match: AT1G04645.1 (AT1G04645.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21 Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
BLAST of Lsi06G008360 vs. TAIR10
Match: AT3G16970.1 (AT3G16970.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 94.4 bits (233), Expect = 6.5e-20 Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
BLAST of Lsi06G008360 vs. TAIR10
Match: AT5G12070.1 (AT5G12070.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18 Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1
BLAST of Lsi06G008360 vs. TAIR10
Match: AT5G12060.1 (AT5G12060.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17 Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1
BLAST of Lsi06G008360 vs. TAIR10
Match: AT3G17080.1 (AT3G17080.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 85.5 bits (210), Expect = 3.0e-17 Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1
BLAST of Lsi06G008360 vs. NCBI nr
Match: gi|659133839|ref|XP_008466918.1| (PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo]) HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62 Identity = 113/146 (77.40%), Postives = 125/146 (85.62%), Query Frame = 1
BLAST of Lsi06G008360 vs. NCBI nr
Match: gi|659133879|ref|XP_008466934.1| (PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo]) HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61 Identity = 112/146 (76.71%), Postives = 125/146 (85.62%), Query Frame = 1
BLAST of Lsi06G008360 vs. NCBI nr
Match: gi|659094489|ref|XP_008448086.1| (PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo]) HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51 Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 1
BLAST of Lsi06G008360 vs. NCBI nr
Match: gi|659133742|ref|XP_008466882.1| (PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo]) HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38 Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 1
BLAST of Lsi06G008360 vs. NCBI nr
Match: gi|659121590|ref|XP_008460735.1| (PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo]) HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23 Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |