Lsi06G008310 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G008310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 17619256 .. 17622513 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAGGTACGTTACACATACAATAATAAAATAGTTGAGAAGGATGTTTACGAAAGTGCTTCGATTATTTACGACATGAATAGCGTGAAGCAATCGAGTTTTGGCGACGAAAGTTGTAACGTTGTTAGAAAGTGTATCTGTCCACGAGTAATGCGTGGGAATTTATGCCCACGAATTTTGTTGCGCGGGCAGAAAACGATTTTGTTAGTTGCGTGGCCAGAAAGACTTTTATGCCCACGTGTTTTATTACGTGAGCATTTCTGCCGACGCAACGTCAAAATGCGTGGCAGAAGCTCTGCCCACGCAAAAAAAGTCGATAGAGGTTTTTTCCACACTTGTAGGAGGATCCGCTGACGTTTTCTTGCATGCGTAGAGACAAAAATGCTTGTAGTGAAAATAACTAATATTTACGTCTTCCACTATGTTATTTAATTGATTTATAATATTTTATAGTCTCATTTATAGATGCCCACTTTTCCATGAGGACGGGCCCGCCGTGATCCAGCCTGAATGGGGCAGAAATTTCCATTTAGGCGCGAAATGAGGGAGAGAGTGAGAAAAAAATTTCCGAAAAGCTAAATGGGGACAAGGACGGGGATGGACCCCATTTCATGTCCTCGCCTTGTTAGACTTTTTTTTTCTTATATTTATTATAATAATTTAATATTGTCTTATTTATTTTTATTATACAAATATTATATTTAATTTTAAAGTGTTATTGTTTTATAGTCAAAATAATGAATATGTTTGAATTAGCGTAAAAAGATAGGTTTAAATTCTAATAAATTTAGATTATATATATAAATAATTTAATAAATATTTATTTCCTACAACTTGAAAATTTTGAATAATTTTCTCTTTAAATTATAATTGTTTACTTGGAACTAATCATATAAAAGTTAACCATTTAATTGAAATTTTTTCATAATAATGATTTATGTTAATTGATTTTTTTTAAAAGTCAAATAGAAAAAATTCTCGAGGAATCCACGCCCCGAATTTGGCGGGATGGGGAGCGGGGAAGCAATTTACTGGCCTGTCCTGCCCTATAAACATCTCTAGTCTCAAGAAAACTTTCGTTTAGAACGCACGGAAAGAAACAAAAGGGGCAGTCTCTCTCTCATCCACTAGCCTCCGACCGCCACATGTCCGCCAATGAGTGTTTTCCGTCCCTACCCACTTCTCCGTCCGTCTCTCTCAAACTCGCTCTTTATTCAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCGTATTGATCCTACCGTGGGTGAAAGTTTGGTGAGTTTCTCTCATGGTTTTCTTGTTTAATCTTGAATACTCAAAACATATGGAAAGATAGATCTATCTTTATGCATCTCACTTACATCACTTATAAAAATAATTCAAATATTTAAAAAAAGAAATTAGAAGAATTTTCTACATGAATTTGATAGGATGCACAAATTTAAATACTACTCAAGATGTACTCAAATATTTTTTTTTATTTTAGTATATAAATTTTAGGTTTTTAATGAATAAAATGCAAGTGAATCTATTTTTTTTTTTTTTTTTAATATATAAGGTGGAGTATGAAACACCTAACCTTGAAGTCAAAACTTTAAGTTTGTTGAGCGGCTATTATCTTTAGAGCAGCTTCATCATTATAGTGTATAAATTTTAGGTCAAATTAAAATTGTAGTTTAAAAATTAGAATTAATCTCTAAAATTTGATAAAAATTCCAAAAACTATTTATGAAAGTTGTATTAAATAAAGCAGAACTAAAATTTAACTTCCTCCAAAATTATATTTTAAGGTAAATTTTATGTTTGTTTGTTGGTTACAAAATATTGTTAATTTTGATCTCATCACGGGTAAAACACGGTTGAATGGTAATAAGAAAGTGTCTAATGATGTGCACAAAACAACTTCAACTCTTTGTGTTATGAGAAGAAGTGAGGAAGTATTTAAGGCATTGGAGCCAACATGTCATTTCACATATCATCAGAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTGTTATATGTCATTTGGCTCCCATGTTCAATGACAGCGAGAACCTGAGTGAGGGAATTGATGTTATAGTTTTTTATAGTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCGTTTGGATGTTTCGATATATCGATCTTCACAAACTTTGCTTGCTATTACTCGAGGAAGAGTTGAAGGGCATTGAGCTTCTCTCGACCTCCTCCATCTTTGCATCTTGGCCCATTGGACTACTTTCTTTTTTAATTATTATTCTTTTTTAAAATAATTCCTCATTTTTTTTAAGTCGATAAATATTGTGGGGTGAACATTATTTTTTTTTTTTTAATGTTTTACTTTAAATTTTTAGTTCATCATTACTAGTTTCAAATCTTTGAGCTAGTCAGGATATTTGTTTATTTCAATTCAGCTATTCTAATTGTTATGTTCTTTTCTTTTTTATTTTTTTTTTTTTAATGTTTTACTTTAAATTTTTAGTTCAACATTACTAGTTTCAAATCTTTGAGCTAGTCAAGGATATTTGTTTATTTCAATTCAGCTATTCTAATTGTTATTTTCTTTTCTTTTTTATTTTTTTTATTAATATATAAGTGATTTTTCGCCTATTTCTTTAATTTGTTATTAATTTAGTACCATACTTTTACTTAAGTTTATTTTAAATAGTAAATTGATTCGCTTATAAAAGTTAAGATCTTTTAATTACGAATTTAGTACTATACTTTTTACTTAAGTTTATTTTAAATAGTAAATTGATTCACTCATAAAAGTTAAGATTTTTTAATTAAAAATTTAAGATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

mRNA sequence

ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

Coding sequence (CDS)

ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

Protein sequence

MVKFLPLSPVPDAFSTMSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNFERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVFSFNDRGLNSIT
BLAST of Lsi06G008310 vs. TrEMBL
Match: A0A0A0L7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 74/170 (43.53%), Postives = 86/170 (50.59%), Query Frame = 1

Query: 32  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAP 91
           P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G  
Sbjct: 39  PIDRFNNQ---LSSTSTSLVNEQSPVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRD 98

Query: 92  TIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------- 151
               PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                 
Sbjct: 99  QGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLED 158

Query: 152 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                    E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Sbjct: 159 GISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLTQPGEFISV 205

BLAST of Lsi06G008310 vs. TrEMBL
Match: A0A0A0LC65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 1

Query: 82  MPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------------- 141
           M  I NII  CSP F KQ+ K D+ + QGRL L K F                       
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 142 ---ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
              E REYDM FK WTSK YVL K W +FYK+NNLT+PGE+I++
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISV 104

BLAST of Lsi06G008310 vs. TrEMBL
Match: A0A067L9U6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15047 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 56/190 (29.47%), Postives = 80/190 (42.11%), Query Frame = 1

Query: 17  MSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPT 76
           M S F+ H  ++    P+     FPG    S +I+ +    L     + L+L      P 
Sbjct: 38  MKSNFLNHRPSSLTSQPQV--QDFPG----SRAIIRQ----LTGQPRSLLQLKIDNYRPA 97

Query: 77  IIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNFERR--------------- 136
            I PP+  +   I  CS  F KQ+T +D+   Q RLTL K +  R               
Sbjct: 98  DI-PPIAKLKGQIGRCSKPFEKQLTSSDVRSDQSRLTLNKAYVERSILPLLNREEGNLDD 157

Query: 137 ------------EYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSG 180
                       EY MT K+W SK YVLM GWKEFY+   L +  +++T      +    
Sbjct: 158 GIKVTIYDPEGNEYPMTLKMWASKVYVLMGGWKEFYQKQKLRENEDFVTTWFFYNVRTRK 216

BLAST of Lsi06G008310 vs. TrEMBL
Match: M5VX51_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015816mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.3e-09
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 1

Query: 79  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKK------------NFERR----- 138
           +PP+P++ N+I+ CS  F KQ+ ++D+ D Q RL++ K            N E       
Sbjct: 99  LPPIPSLQNLIQDCSKPFEKQLARSDVKDNQCRLSMNKEDVENNIMPLLRNGENLNEGIN 158

Query: 139 ---------EYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVF 183
                    EY M FK+W +K +VL  GWK F     L +  +++T+ I   ++  G  F
Sbjct: 159 VTTYDMTGNEYPMVFKIWATKVHVLTGGWKTFCNDLGLVENQDFVTLWIFRHVDKGGLCF 218

BLAST of Lsi06G008310 vs. TrEMBL
Match: B9N1E3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40760g PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 1

Query: 79  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNFERR----------------- 138
           +P +P +  II  CS  F KQ+T++DL D Q RL++ K   ++                 
Sbjct: 130 VPSIPGLNGIIGRCSKPFEKQLTESDLRDDQSRLSINKADAQKYLYPLLNEDENLAEGIN 189

Query: 139 ---------EYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVF 184
                    E++M FK+W SK +VL+ GWK F+  + L +  +++T+ +   ++     F
Sbjct: 190 VTTYDPNGKEFEMVFKIWVSKIHVLIGGWKAFFHEHQLRKDQDFVTLWMFRRLDTEKLCF 249

BLAST of Lsi06G008310 vs. NCBI nr
Match: gi|700200968|gb|KGN56101.1| (hypothetical protein Csa_3G073910 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 74/170 (43.53%), Postives = 86/170 (50.59%), Query Frame = 1

Query: 32  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAP 91
           P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G  
Sbjct: 39  PIDRFNNQ---LSSTSTSLVNEQSPVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRD 98

Query: 92  TIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------- 151
               PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                 
Sbjct: 99  QGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLED 158

Query: 152 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                    E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Sbjct: 159 GISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLTQPGEFISV 205

BLAST of Lsi06G008310 vs. NCBI nr
Match: gi|659071538|ref|XP_008460492.1| (PREDICTED: uncharacterized protein LOC103499291 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 63/154 (40.91%), Postives = 79/154 (51.30%), Query Frame = 1

Query: 32  PPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKT 91
           PP  + N+ P + +    +VNE  L  N+N N  +  A         +PPM  I NII  
Sbjct: 53  PP--VVNEQPPIVNEHAPVVNEALLNNNNNNNENVA-AVVADRDLGRLPPMVVIQNIIGE 112

Query: 92  CSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYDM 151
           CSP F KQ+TK D+ D QGRL L K F                          E REYDM
Sbjct: 113 CSPPFVKQLTKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILTNGISVTVYDSEGREYDM 172

Query: 152 TFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
           TF++WTSK YVL K WK+FY  N LT+P E+IT+
Sbjct: 173 TFRLWTSKLYVLTKSWKKFYHDNGLTRPDEFITL 203

BLAST of Lsi06G008310 vs. NCBI nr
Match: gi|700203164|gb|KGN58297.1| (hypothetical protein Csa_3G609250 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 1

Query: 82  MPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------------- 141
           M  I NII  CSP F KQ+ K D+ + QGRL L K F                       
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 142 ---ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
              E REYDM FK WTSK YVL K W +FYK+NNLT+PGE+I++
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISV 104

BLAST of Lsi06G008310 vs. NCBI nr
Match: gi|802546570|ref|XP_012085562.1| (PREDICTED: putative B3 domain-containing protein At4g03160 [Jatropha curcas])

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 56/190 (29.47%), Postives = 80/190 (42.11%), Query Frame = 1

Query: 17  MSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPT 76
           M S F+ H  ++    P+     FPG    S +I+ +    L     + L+L      P 
Sbjct: 38  MKSNFLNHRPSSLTSQPQV--QDFPG----SRAIIRQ----LTGQPRSLLQLKIDNYRPA 97

Query: 77  IIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNFERR--------------- 136
            I PP+  +   I  CS  F KQ+T +D+   Q RLTL K +  R               
Sbjct: 98  DI-PPIAKLKGQIGRCSKPFEKQLTSSDVRSDQSRLTLNKAYVERSILPLLNREEGNLDD 157

Query: 137 ------------EYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSG 180
                       EY MT K+W SK YVLM GWKEFY+   L +  +++T      +    
Sbjct: 158 GIKVTIYDPEGNEYPMTLKMWASKVYVLMGGWKEFYQKQKLRENEDFVTTWFFYNVRTRK 216

BLAST of Lsi06G008310 vs. NCBI nr
Match: gi|595821215|ref|XP_007204780.1| (hypothetical protein PRUPE_ppa015816mg [Prunus persica])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 1

Query: 79  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKK------------NFERR----- 138
           +PP+P++ N+I+ CS  F KQ+ ++D+ D Q RL++ K            N E       
Sbjct: 99  LPPIPSLQNLIQDCSKPFEKQLARSDVKDNQCRLSMNKEDVENNIMPLLRNGENLNEGIN 158

Query: 139 ---------EYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVF 183
                    EY M FK+W +K +VL  GWK F     L +  +++T+ I   ++  G  F
Sbjct: 159 VTTYDMTGNEYPMVFKIWATKVHVLTGGWKTFCNDLGLVENQDFVTLWIFRHVDKGGLCF 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7L0_CUCSA1.1e-2243.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073910 PE=4 SV=1[more]
A0A0A0LC65_CUCSA1.0e-1546.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609250 PE=4 SV=1[more]
A0A067L9U6_JATCU2.9e-1029.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15047 PE=4 SV=1[more]
M5VX51_PRUPE9.3e-0930.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015816mg PE=4 SV=1[more]
B9N1E3_POPTR4.6e-0828.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40760g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700200968|gb|KGN56101.1|1.6e-2243.53hypothetical protein Csa_3G073910 [Cucumis sativus][more]
gi|659071538|ref|XP_008460492.1|4.4e-2040.91PREDICTED: uncharacterized protein LOC103499291 [Cucumis melo][more]
gi|700203164|gb|KGN58297.1|1.5e-1546.15hypothetical protein Csa_3G609250 [Cucumis sativus][more]
gi|802546570|ref|XP_012085562.1|4.1e-1029.47PREDICTED: putative B3 domain-containing protein At4g03160 [Jatropha curcas][more]
gi|595821215|ref|XP_007204780.1|1.3e-0830.00hypothetical protein PRUPE_ppa015816mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G008310.1Lsi06G008310.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 106..151
score: 1.
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 94..159
score: 1.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None