Lsi06G008220 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G008220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Plant self-incompatibility protein S1 family
Location	chr06 : 17450814 .. 17451257 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTAATCTTTTTTTTCACTAGCCTACATGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACGGTCACAATTGTCAACCAAATTGAATATGGCATACCAGTCAACGTTCATTGCAAATCCAAGAACGACGACCTAGGAGTCCATATCCTTCCGCTTGGACAAAGCTACTCGTTCAGGTTCAGACCCAACCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACCCCAAATCTACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGTATATGCCTGCAGAACCCAAAAACTGCTGACGGAAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA

mRNA sequence

ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTAATCTTTTTTTTCACTAGCCTACATGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACGGTCACAATTGTCAACCAAATTGAATATGGCATACCAGTCAACGTTCATTGCAAATCCAAGAACGACGACCTAGGAGTCCATATCCTTCCGCTTGGACAAAGCTACTCGTTCAGGTTCAGACCCAACCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACCCCAAATCTACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGTATATGCCTGCAGAACCCAAAAACTGCTGACGGAAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA

Coding sequence (CDS)

ATGGCTTCATCTCCAGCACTTGCACTATCTTTGTTAATCTTTTTTTTCACTAGCCTACATGCCATTCAAGGAGCATTCTTAATTCCACCAGAAACTACGGTCACAATTGTCAACCAAATTGAATATGGCATACCAGTCAACGTTCATTGCAAATCCAAGAACGACGACCTAGGAGTCCATATCCTTCCGCTTGGACAAAGCTACTCGTTCAGGTTCAGACCCAACCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACCCCAAATCTACTGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGTATATGCCTGCAGAACCCAAAAACTGCTGACGGAAAACAAATTTGCTATAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA

Protein sequence

MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQWIIHEYSICLQNPKTADGKQICYNYGDKEPTSIM

Homology

[Close]

BLAST of Lsi06G008220 vs. TrEMBL
Match: B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 61/130 (46.92%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 1   MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 60
           M SS AL  S+ +    SLHA      + PETTVTIVN++  G  + +HC+SK DDLGV+
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVN 60

Query: 61  ILPLGQSYSFRFRPNLVGTTLFYCSFVWT-GQPQIYWFDVFNHKRDAGLCTTCQWIIHEY 120
           ++   +SYSF FRPN+ GTTLFYC F W  GQP  ++F +++ KRD   CT C+W+++  
Sbjct: 61  VVSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQP--HYFTIYDFKRDGKTCTNCRWLVYAS 120

Query: 121 SICLQNPKTA 130
             CLQ+ +T+
Sbjct: 121 GPCLQHSETS 127

[Close]

BLAST of Lsi06G008220 vs. TrEMBL
Match: B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 6   ALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLG 65
           AL  S+ +    SLHA      + PETTVTIVN++  G  + +HC+SK DDLGV+++   
Sbjct: 76  ALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVNVVSSD 135

Query: 66  QSYSFRFRPNLVGTTLFYCSFVWT-GQPQIYWFDVFNHKRDAGLCTTCQWIIHEYSICLQ 125
           +SYSF FRPN+ GTTLFYC F W  GQP  ++F +++ KRD   CT C+W+++    CLQ
Sbjct: 136 KSYSFNFRPNVWGTTLFYCVFEWVKGQP--HYFTIYDFKRDGKTCTNCRWLVYASGPCLQ 195

Query: 126 NPKTA 130
           + +T+
Sbjct: 196 HSETS 197

[Close]

BLAST of Lsi06G008220 vs. TrEMBL
Match: B9RWP2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023130 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1


Query: 33  TVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQP 92
           TV I N +  G+ ++VHCKSK DDLGVHILP   +Y F F+PN  G T F+C F W  + 
Sbjct: 133 TVIITNDLNQGLDLSVHCKSKEDDLGVHILPPHNNYQFEFQPNFWGVTQFFCGFTWK-KT 192

Query: 93  QIYWFDVFNHKRDAGLCTTCQWIIHEYSICLQNPKTADGKQICYNY 139
            I+WFD++   RD   C+TC+W++ +   C+   KT +   +CY++
Sbjct: 193 GIHWFDIYIQNRDYPKCSTCKWVLRQKGPCMFEEKT-NNYTLCYDW 236

[Close]

BLAST of Lsi06G008220 vs. TrEMBL
Match: V4S4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 54/129 (41.86%), Postives = 71/129 (55.04%), Query Frame = 1


Query: 2   ASSPALALSLLIF-FFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 61
           +  P L L LL+     S+ +  G   +PP  TV + N ++  + + VHCKSKNDDLG  
Sbjct: 5   SKQPVLLLILLLHVLLASISSTSGWSAMPPRITVIVNNDLDNRLDLTVHCKSKNDDLGER 64

Query: 62  ILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLC-TTCQWIIHEY 121
            LP   S+ F FRPN  G T+F+CS  W  + +IYWFD++   RD  LC   C W I   
Sbjct: 65  HLPYHNSFQFSFRPNFWGRTVFFCSMHWPPEHEIYWFDIYVTTRDRRLCKERCSWNIKPR 124

Query: 122 SICLQNPKT 129
             CL N KT
Sbjct: 125 GPCLFNDKT 133

[Close]

BLAST of Lsi06G008220 vs. TrEMBL
Match: D7UAW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g02010 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 55/141 (39.01%), Postives = 75/141 (53.19%), Query Frame = 1


Query: 1   MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 60
           M S      S ++  F       G  ++  +  + I+N ++ G  +NVHCKSKNDDLG H
Sbjct: 1   MLSLDRYLFSFVLLVFLVRLCDGGPGVVEKKVDLKIINGLDAGTDLNVHCKSKNDDLGAH 60

Query: 61  ILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCT-TCQWIIHEY 120
           +L   Q + FRFRPN  GTTL++C F W  +   +WFD++  KRDAG C   C W +   
Sbjct: 61  VLAFDQFFEFRFRPNFWGTTLYFCRFWWNSES--HWFDIYVQKRDAGRCNKKCWWYVGAD 120

Query: 121 SICLQNPKTADGKQICYNYGD 141
             CL N K      IC N+ D
Sbjct: 121 GPCLLNDKIG-VYDICENWKD 138

[Close]

BLAST of Lsi06G008220 vs. TAIR10
Match: AT1G04645.1 (AT1G04645.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 9   LSLLIFFFTSLHAIQGAFLIPP---ETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLG 68
           +S++ FFF  L    G   +PP    T VT+ N I  G P+ +HCKSK DDLG+H++P  
Sbjct: 4   VSIVCFFFFLLFG-SGYGGLPPFWRATVVTMTNLIG-GPPLTIHCKSKQDDLGIHVVPFK 63

Query: 69  QSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQWIIHEYSIC 123
           Q Y F+F+PNL  +TLF+CSF W    Q   FD+++ +RD G+C  CQW I     C
Sbjct: 64  QEYHFKFQPNLWKSTLFFCSFQW--DSQFKSFDIYDAQRDQGICDDCQWEIKPDGPC 116

[Close]

BLAST of Lsi06G008220 vs. TAIR10
Match: AT3G16970.1 (AT3G16970.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 30  PETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLVGTTLFYCSFVWT 89
           P TTV I N +   +P+  HCKSKNDDLG   + +  ++SF FRP++ G TLF+C F+W 
Sbjct: 26  PRTTVVIYNDLGGHLPLRYHCKSKNDDLGDRNMAVNGTWSFEFRPSVFGGTLFFCGFIW- 85

Query: 90  GQPQIYWFDVFNHKRDAGL----CTTCQWIIHEYSICLQNPKTADGKQIC 136
              +++WFD++   RD       C  C+W I +   C  N K ++   +C
Sbjct: 86  -DKELHWFDIYKQSRDREFAEFGCRRCEWKIRKDGPCKLN-KNSNMFDVC 132

[Close]

BLAST of Lsi06G008220 vs. TAIR10
Match: AT5G12070.1 (AT5G12070.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 90.5 bits (223), Expect = 9.3e-19
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 31  ETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLV-GTTLFYCSFVWT 90
           ++ VTI N++  G  + +HCKS +DDLG+ IL    S+SF+FRP++V G TLF+C F W 
Sbjct: 37  KSVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWP 96

Query: 91  GQPQIYWFDVFNHKRDA---GL-CTTCQWIIHEYSICLQNPKTADGKQICYNY 139
           GQ +  WF++++  RD    G+ C  C W I +Y  C +  +  D   ICY++
Sbjct: 97  GQSK--WFNIYDDDRDGVRMGIPCIYCIWDIGKYGPC-RFSEIDDAFNICYDW 146

[Close]

BLAST of Lsi06G008220 vs. TAIR10
Match: AT5G12060.1 (AT5G12060.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-18
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 34  VTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQ 93
           V I N++  G+ +N+HCKS +DDLG+ IL    S+SF+FR ++VGTTLFYC F W GQ +
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 94  IYWFDVFNHKRDAG----LCTTCQWIIHEYSICLQNPKTADGKQICYNY 139
              FD+++  RD       C  C W I     C+ + ++     ICY++
Sbjct: 99  --RFDIYDDDRDGVRSHISCINCIWDISIQGPCMFS-ESDHAFNICYDW 144

[Close]

BLAST of Lsi06G008220 vs. TAIR10
Match: AT3G17080.1 (AT3G17080.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-17
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1


Query: 8   ALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQS 67
           +L   + FF  +     A +    T+V I N +  G+P+  HCKS+ DDLG   L  G+S
Sbjct: 3   SLETCLLFFVMV-MFMSAIMSRASTSVVIYNDLGGGLPLRHHCKSREDDLGYQSLAPGRS 62

Query: 68  YSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGL----CTTCQWIIHEYSICL 127
           +SF F P++ G TLFYC F W  +  I  FD++   RD       C  C+W I +   C 
Sbjct: 63  WSFGFTPDIFGRTLFYCRFSWGAESHI--FDIYKQSRDKEFQEFGCKKCEWKIRKNGPCK 122

Query: 128 QNPKT 129
              KT
Sbjct: 123 FYKKT 124

[Close]

BLAST of Lsi06G008220 vs. NCBI nr
Match: gi|659133839|ref|XP_008466918.1| (PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-61
Identity = 111/146 (76.03%), Postives = 124/146 (84.93%), Query Frame = 1


Query: 1   MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 60
           M SSP LALS LIFF  +L AIQG+  I P TTV IVNQIEYGIPV VHCKSKNDDLGVH
Sbjct: 1   MGSSPTLALSFLIFFLCNLRAIQGSIFIQPVTTVVIVNQIEYGIPVTVHCKSKNDDLGVH 60

Query: 61  ILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQWIIHEYS 120
           +LPLGQ YSF+FRPNLVGTTLF+CSF WTGQ QIYWF++F+ KRDAG CTTC+WIIHEYS
Sbjct: 61  VLPLGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYS 120

Query: 121 ICLQNPKTADGKQICYNYGDKEPTSI 147
           +CLQ+PK   GK ICYNYGDKEP+ +
Sbjct: 121 MCLQDPKN-PGKDICYNYGDKEPSIV 145

[Close]

BLAST of Lsi06G008220 vs. NCBI nr
Match: gi|659133879|ref|XP_008466934.1| (PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-60
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 1


Query: 1   MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 60
           M SSP LALSLLIFF  +L AIQG+  I P TTV IVNQIEY IPV VHCKSKNDDLGVH
Sbjct: 1   MGSSPRLALSLLIFFSCNLRAIQGSIFIQPVTTVVIVNQIEYDIPVTVHCKSKNDDLGVH 60

Query: 61  ILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQWIIHEYS 120
           +LPLGQ YSF+FRPNLVGTTLF+CSF WTGQ QIYWF++F+ KRDAG CTTC+WIIHEYS
Sbjct: 61  VLPLGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYS 120

Query: 121 ICLQNPKTADGKQICYNYGDKEPTSI 147
           +CLQ+P+   GK ICYNYGDKEP+ +
Sbjct: 121 MCLQDPEN-PGKDICYNYGDKEPSIV 145

[Close]

BLAST of Lsi06G008220 vs. NCBI nr
Match: gi|659094489|ref|XP_008448086.1| (PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 5.1e-51
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 21  AIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVHILPLGQSYSFRFRPNLVGTT 80
           +I G+  I P TTV IVNQIEYGIPV  HCKSKN+DLGVH+L LGQ YSF+FRPNLVGTT
Sbjct: 27  SISGSIFIQPVTTVVIVNQIEYGIPVTFHCKSKNNDLGVHVLSLGQGYSFKFRPNLVGTT 86

Query: 81  LFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQWIIHEYSICLQNPKTADGKQICYNYGD 140
           LF+CSF WTGQ QIYWF++F+ K D G CTTC+WIIHEYS+CLQ+PK   GK ICYNYGD
Sbjct: 87  LFFCSFTWTGQHQIYWFNIFDDKGDVGKCTTCRWIIHEYSMCLQDPKN-PGKVICYNYGD 146

Query: 141 KEPTSI 147
           KEP+ +
Sbjct: 147 KEPSIV 151

[Close]

BLAST of Lsi06G008220 vs. NCBI nr
Match: gi|659133742|ref|XP_008466882.1| (PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 3.8e-38
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 1


Query: 54  NDDLGVHILPLGQSYSFRFRPNLVGTTLFYCSFVWTGQPQIYWFDVFNHKRDAGLCTTCQ 113
           NDDLGVH+LPLGQ Y F+FRPNLVGTTLF+CSF WTGQ QIYWF++F+ KRD G CTTC+
Sbjct: 1   NDDLGVHVLPLGQGYLFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDTGKCTTCR 60

Query: 114 WIIHEYSICLQNPKTADGKQICYNYGDKEPTSI 147
           WII EYS+CLQNPK   GK ICYNYGDKEP+ +
Sbjct: 61  WIILEYSMCLQNPKN-PGKDICYNYGDKEPSIV 92

[Close]

BLAST of Lsi06G008220 vs. NCBI nr
Match: gi|659121590|ref|XP_008460735.1| (PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 2.1e-25
Identity = 61/130 (46.92%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 1   MASSPALALSLLIFFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVNVHCKSKNDDLGVH 60
           M SS AL  S+ +    SLHA      + PETTVTIVN++  G  + +HC+SK DDLGV+
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVN 60

Query: 61  ILPLGQSYSFRFRPNLVGTTLFYCSFVWT-GQPQIYWFDVFNHKRDAGLCTTCQWIIHEY 120
           ++   +SYSF FRPN+ GTTLFYC F W  GQP  ++F +++ KRD   CT C+W+++  
Sbjct: 61  VVSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQP--HYFTIYDFKRDGKTCTNCRWLVYAS 120

Query: 121 SICLQNPKTA 130
             CLQ+ +T+
Sbjct: 121 GPCLQHSETS 127

The following BLAST results are available for this feature:

BLAST of Lsi06G008220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G008220 vs. TrEMBL


Match Name	E-value	Identity	Description
B0F817_CUCME	1.5e-25	46.92	Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1	[more]
B0F818_CUCME	2.2e-24	46.40	Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1	[more]
B9RWP2_RICCO	1.7e-21	43.40	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023130 PE=4 SV=1	[more]
V4S4P0_9ROSI	2.5e-20	41.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1	[more]
D7UAW5_VITVI	2.5e-20	39.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g02010 PE=4 SV=...	[more]

BLAST of Lsi06G008220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04645.1	1.2e-21	44.44	Plant self-incompatibility protein S1 family	[more]
AT3G16970.1	1.1e-19	38.18	Plant self-incompatibility protein S1 family	[more]
AT5G12070.1	9.3e-19	40.71	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	7.9e-18	40.37	Plant self-incompatibility protein S1 family	[more]
AT3G17080.1	6.6e-17	36.00	Plant self-incompatibility protein S1 family	[more]

BLAST of Lsi06G008220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133839\|ref\|XP_008466918.1\|	1.4e-61	76.03	PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo]	[more]
gi\|659133879\|ref\|XP_008466934.1\|	2.1e-60	75.34	PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo]	[more]
gi\|659094489\|ref\|XP_008448086.1\|	5.1e-51	72.22	PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo]	[more]
gi\|659133742\|ref\|XP_008466882.1\|	3.8e-38	75.27	PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo]	[more]
gi\|659121590\|ref\|XP_008460735.1\|	2.1e-25	46.92	PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1
IPR008972	Cupredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G008220.1	Lsi06G008220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 30..88 score: 1.4
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 33..137 score: 8.1
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 7..144 score: 6.3
None	No IPR available	PANTHER	PTHR31232:SF5	GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14A17-RELATED	coord: 7..144 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G008220	Melon (DHL92) v3.6.1	lsimedB427
Lsi06G008220	Melon (DHL92) v3.6.1	lsimedB440
Lsi06G008220	Silver-seed gourd	carlsiB037
Lsi06G008220	Silver-seed gourd	carlsiB115
Lsi06G008220	Silver-seed gourd	carlsiB518
Lsi06G008220	Silver-seed gourd	carlsiB818
Lsi06G008220	Cucumber (Chinese Long) v3	cuclsiB142
Lsi06G008220	Watermelon (97103) v2	lsiwmbB358
Lsi06G008220	Watermelon (97103) v2	lsiwmbB378
Lsi06G008220	Wax gourd	lsiwgoB474
Lsi06G008220	Wax gourd	lsiwgoB521
Lsi06G008220	Bottle gourd (USVL1VR-Ls)	lsilsiB057
Lsi06G008220	Cucumber (Gy14) v1	cgylsiB165
Lsi06G008220	Cucurbita maxima (Rimu)	cmalsiB074
Lsi06G008220	Cucurbita maxima (Rimu)	cmalsiB145
Lsi06G008220	Cucurbita maxima (Rimu)	cmalsiB182
Lsi06G008220	Cucurbita maxima (Rimu)	cmalsiB735
Lsi06G008220	Cucurbita moschata (Rifu)	cmolsiB060
Lsi06G008220	Cucurbita moschata (Rifu)	cmolsiB129
Lsi06G008220	Cucurbita moschata (Rifu)	cmolsiB172
Lsi06G008220	Cucurbita moschata (Rifu)	cmolsiB725
Lsi06G008220	Cucurbita pepo (Zucchini)	cpelsiB300
Lsi06G008220	Cucurbita pepo (Zucchini)	cpelsiB557
Lsi06G008220	Wild cucumber (PI 183967)	cpilsiB130
Lsi06G008220	Cucumber (Chinese Long) v2	culsiB131
Lsi06G008220	Melon (DHL92) v3.5.1	lsimeB418
Lsi06G008220	Watermelon (Charleston Gray)	lsiwcgB354
Lsi06G008220	Watermelon (Charleston Gray)	lsiwcgB377
Lsi06G008220	Watermelon (97103) v1	lsiwmB412
Lsi06G008220	Watermelon (97103) v1	lsiwmB419