Lsi06G008000 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G008000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionInositol-tetrakisphosphate 1-kinase
Locationchr06 : 16706472 .. 16706681 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGGATTGAAGAAGACGACCTCGAGATTTTTAGGGTTGTTAACCCTAATATGGTGATTGTGAACTCATTGGACGTAGTTGAGAGGCTTCACAACATGATTTCTATGCTTCAGGTGGTATCAAAGCTCAAGATTCAAAATCACGACGAGTCGTTCGAGATTCCAGAGCAGATTGTGATTTACGATAAGGAGAATCTATCTGATTAA

mRNA sequence

ATGGTGCGGATTGAAGAAGACGACCTCGAGATTTTTAGGGTTGTTAACCCTAATATGGTGATTGTGAACTCATTGGACGTAGTTGAGAGGCTTCACAACATGATTTCTATGCTTCAGGTGGTATCAAAGCTCAAGATTCAAAATCACGACGAGTCGTTCGAGATTCCAGAGCAGATTGTGATTTACGATAAGGAGAATCTATCTGATTAA

Coding sequence (CDS)

ATGGTGCGGATTGAAGAAGACGACCTCGAGATTTTTAGGGTTGTTAACCCTAATATGGTGATTGTGAACTCATTGGACGTAGTTGAGAGGCTTCACAACATGATTTCTATGCTTCAGGTGGTATCAAAGCTCAAGATTCAAAATCACGACGAGTCGTTCGAGATTCCAGAGCAGATTGTGATTTACGATAAGGAGAATCTATCTGATTAA

Protein sequence

MVRIEEDDLEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLSD
Homology
[Close]
BLAST of Lsi06G008000 vs. Swiss-Prot
Match: ITPK5_ORYSI (Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. indica GN=ITPK5 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.8e-06
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKI---QNHDESFEIPEQIVIYDKE 68
           L+ F   +P + +V+    ++RLHN ISMLQVVS+L +    +H  +F IP Q+V+YD  
Sbjct: 77  LDAFSAAHPAVPVVDPPHAIDRLHNRISMLQVVSELDVPLHAHHHHTFGIPSQVVVYDAA 136

Query: 69  NLSD 70
            LSD
Sbjct: 137 ALSD 140

[Close]
BLAST of Lsi06G008000 vs. Swiss-Prot
Match: ITPK5_ORYSJ (Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. japonica GN=ITPK5 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.8e-06
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKI---QNHDESFEIPEQIVIYDKE 68
           L+ F   +P + +V+    ++RLHN ISMLQVVS+L +    +H  +F IP Q+V+YD  
Sbjct: 77  LDAFSAAHPAVPVVDPPHAIDRLHNRISMLQVVSELDVPLHAHHHHTFGIPSQVVVYDAA 136

Query: 69  NLSD 70
            LSD
Sbjct: 137 ALSD 140

[Close]
BLAST of Lsi06G008000 vs. TrEMBL
Match: A0A0A0LK17_CUCSA (Inositol-tetrakisphosphate 1-kinase OS=Cucumis sativus GN=Csa_3G901120 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.6e-16
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQ-NHDESFEIPEQIVIYDKENL 68
           LE FR +NPN+VI++SLD +ERLHN ISMLQVVS+LKI+ NHDESF IPEQIVIYDKE+L
Sbjct: 69  LENFRTINPNVVILDSLDAIERLHNRISMLQVVSELKIENNHDESFGIPEQIVIYDKEDL 128

Query: 69  SD 70
           SD
Sbjct: 129 SD 130

[Close]
BLAST of Lsi06G008000 vs. TrEMBL
Match: A0A0A0L3W9_CUCSA (Inositol-tetrakisphosphate 1-kinase OS=Cucumis sativus GN=Csa_3G009450 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-12
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 12  FRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLSD 70
           FRV NPN  I++S D +ERLHN ISMLQVVS+LKI N DESF IP+QIVIYDKE L D
Sbjct: 70  FRVKNPNAFILDSPDSIERLHNRISMLQVVSELKIDNPDESFGIPKQIVIYDKETLFD 127

[Close]
BLAST of Lsi06G008000 vs. TrEMBL
Match: A0A061G7L3_THECC (Inositol-tetrakisphosphate 1-kinase OS=Theobroma cacao GN=TCM_016550 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-12
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLS 68
           LE FR  NPN VIV+S D +ERLHN ISMLQVVS+LKI+N  E+F IP+QIVIYD+E L 
Sbjct: 69  LEDFRSRNPNAVIVDSPDAIERLHNRISMLQVVSELKIENQSETFGIPKQIVIYDQETLF 128

Query: 69  D 70
           D
Sbjct: 129 D 129

[Close]
BLAST of Lsi06G008000 vs. TrEMBL
Match: M5WEJ0_PRUPE (Inositol-tetrakisphosphate 1-kinase OS=Prunus persica GN=PRUPE_ppa007677mg PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-11
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLS 68
           LE FRV NPN VI++S + +ERLHN ISMLQVVS+LKI++  ++F IP+QIVIYDKE L 
Sbjct: 67  LEEFRVKNPNAVIIDSPEEIERLHNRISMLQVVSELKIEHESDTFGIPKQIVIYDKETLF 126

Query: 69  D 70
           D
Sbjct: 127 D 127

[Close]
BLAST of Lsi06G008000 vs. TrEMBL
Match: A0A0D2QE90_GOSRA (Inositol-tetrakisphosphate 1-kinase OS=Gossypium raimondii GN=B456_006G217500 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 12  FRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLSD 70
           FR  NPN VIV+S D +ERLHN ISMLQVVS+LKI+N  E+F IP+QIVIYD+E L D
Sbjct: 72  FRSRNPNAVIVDSPDAIERLHNRISMLQVVSELKIENQSETFGIPKQIVIYDQETLFD 129

[Close]
BLAST of Lsi06G008000 vs. NCBI nr
Match: gi|659132063|ref|XP_008465996.1| (PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLS 68
           LE FRV+NPN+VI++SLD +ERLHN ISMLQVVS+LKI+NHDESF IPEQIVIYD ENLS
Sbjct: 69  LENFRVLNPNVVILDSLDAIERLHNRISMLQVVSELKIENHDESFGIPEQIVIYDMENLS 128

Query: 69  D 70
           D
Sbjct: 129 D 129

[Close]
BLAST of Lsi06G008000 vs. NCBI nr
Match: gi|659132061|ref|XP_008465995.1| (PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLS 68
           LE FRV+NPN+VI++SLD +ERLHN ISMLQVVS+LKI+NHDESF IPEQIVIYD ENLS
Sbjct: 69  LENFRVLNPNVVILDSLDAIERLHNRISMLQVVSELKIENHDESFGIPEQIVIYDMENLS 128

Query: 69  D 70
           D
Sbjct: 129 D 129

[Close]
BLAST of Lsi06G008000 vs. NCBI nr
Match: gi|700205233|gb|KGN60366.1| (hypothetical protein Csa_3G901120 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQ-NHDESFEIPEQIVIYDKENL 68
           LE FR +NPN+VI++SLD +ERLHN ISMLQVVS+LKI+ NHDESF IPEQIVIYDKE+L
Sbjct: 69  LENFRTINPNVVILDSLDAIERLHNRISMLQVVSELKIENNHDESFGIPEQIVIYDKEDL 128

Query: 69  SD 70
           SD
Sbjct: 129 SD 130

[Close]
BLAST of Lsi06G008000 vs. NCBI nr
Match: gi|778687878|ref|XP_004136195.2| (PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1 

Query: 9   LEIFRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQ-NHDESFEIPEQIVIYDKENL 68
           LE FR +NPN+VI++SLD +ERLHN ISMLQVVS+LKI+ NHDESF IPEQIVIYDKE+L
Sbjct: 69  LENFRTINPNVVILDSLDAIERLHNRISMLQVVSELKIENNHDESFGIPEQIVIYDKEDL 128

Query: 69  SD 70
           SD
Sbjct: 129 SD 130

[Close]
BLAST of Lsi06G008000 vs. NCBI nr
Match: gi|659095599|ref|XP_008448667.1| (PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-12
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 12  FRVVNPNMVIVNSLDVVERLHNMISMLQVVSKLKIQNHDESFEIPEQIVIYDKENLSD 70
           FRV NPN  I++S D +ERLHN ISMLQVVS+LKI N DESF IP+QIVIYDKE L D
Sbjct: 70  FRVKNPNAFILDSPDSIERLHNRISMLQVVSELKIDNPDESFGIPKQIVIYDKETLFD 127

The following BLAST results are available for this feature:
BLAST of Lsi06G008000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ITPK5_ORYSI6.8e-0643.75Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. indica GN=ITPK5 PE=... [more]
ITPK5_ORYSJ6.8e-0643.75Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. japonica GN=ITPK5 P... [more]
BLAST of Lsi06G008000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK17_CUCSA8.6e-1677.42Inositol-tetrakisphosphate 1-kinase OS=Cucumis sativus GN=Csa_3G901120 PE=3 SV=1[more]
A0A0A0L3W9_CUCSA5.8e-1272.41Inositol-tetrakisphosphate 1-kinase OS=Cucumis sativus GN=Csa_3G009450 PE=3 SV=1[more]
A0A061G7L3_THECC7.5e-1268.85Inositol-tetrakisphosphate 1-kinase OS=Theobroma cacao GN=TCM_016550 PE=3 SV=1[more]
M5WEJ0_PRUPE2.2e-1165.57Inositol-tetrakisphosphate 1-kinase OS=Prunus persica GN=PRUPE_ppa007677mg PE=3 ... [more]
A0A0D2QE90_GOSRA2.9e-1168.97Inositol-tetrakisphosphate 1-kinase OS=Gossypium raimondii GN=B456_006G217500 PE... [more]
BLAST of Lsi06G008000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G008000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132063|ref|XP_008465996.1|3.8e-1780.33PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like isoform X2 [Cucumis melo][more]
gi|659132061|ref|XP_008465995.1|3.8e-1780.33PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like isoform X1 [Cucumis melo][more]
gi|700205233|gb|KGN60366.1|1.2e-1577.42hypothetical protein Csa_3G901120 [Cucumis sativus][more]
gi|778687878|ref|XP_004136195.2|1.2e-1577.42PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Cucumis sativus][more]
gi|659095599|ref|XP_008448667.1|8.3e-1272.41PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0047325inositol tetrakisphosphate 1-kinase activity
GO:0005524ATP binding
GO:0000287magnesium ion binding
GO:0052726inositol-1,3,4-trisphosphate 5-kinase activity
GO:0052725inositol-1,3,4-trisphosphate 6-kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0032957inositol trisphosphate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR008656Inositol_tetrakis-P_1-kinase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032957 inositol trisphosphate metabolic process
biological_process GO:0016310 phosphorylation
cellular_component GO:0005622 intracellular
molecular_function GO:0005524 ATP binding
molecular_function GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity
molecular_function GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity
molecular_function GO:0047325 inositol tetrakisphosphate 1-kinase activity
molecular_function GO:0000287 magnesium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G008000.1Lsi06G008000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008656Inositol-tetrakisphosphate 1-kinasePFAMPF05770Ins134_P3_kincoord: 8..67
score: 8.0
NoneNo IPR availablePANTHERPTHR14217FAMILY NOT NAMEDcoord: 8..69
score: 1.7
NoneNo IPR availablePANTHERPTHR14217:SF5INOSITOL-TETRAKISPHOSPHATE 1-KINASE 1coord: 8..69
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G008000Silver-seed gourdcarlsiB022
Lsi06G008000Silver-seed gourdcarlsiB830
Lsi06G008000Cucumber (Chinese Long) v3cuclsiB068
Lsi06G008000Watermelon (97103) v2lsiwmbB378
Lsi06G008000Wax gourdlsiwgoB521
Lsi06G008000Cucumber (Gy14) v1cgylsiB473
Lsi06G008000Cucurbita maxima (Rimu)cmalsiB078
Lsi06G008000Cucurbita maxima (Rimu)cmalsiB128
Lsi06G008000Cucurbita moschata (Rifu)cmolsiB064
Lsi06G008000Cucurbita moschata (Rifu)cmolsiB118
Lsi06G008000Cucurbita pepo (Zucchini)cpelsiB559
Lsi06G008000Cucurbita pepo (Zucchini)cpelsiB627
Lsi06G008000Wild cucumber (PI 183967)cpilsiB059
Lsi06G008000Cucumber (Chinese Long) v2culsiB058
Lsi06G008000Melon (DHL92) v3.5.1lsimeB401
Lsi06G008000Watermelon (Charleston Gray)lsiwcgB377
Lsi06G008000Watermelon (97103) v1lsiwmB418
Lsi06G008000Watermelon (97103) v1lsiwmB419
Lsi06G008000Cucumber (Gy14) v2cgyblsiB055
Lsi06G008000Melon (DHL92) v3.6.1lsimedB424