Lsi06G007920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G007920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 16569622 .. 16569849 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGAACCTCTTCGAAGGCCTTCCACCGCCGATTTCAGCGACAAACCCTTCGCCGGAGACCCAATTACCAGACGCAGCCACCAATCAAAGTCGGCCCTCTGAACCTTCTACCAATCCCGCCGCTTCTTCTTCTTCTTCTCCGGCGCCGGTCATCAAGAGCGCCCTCAAGCGCCCGAAGACTGCCCAAGAACCCAACCCCGCAGGTCTTCTGTTCTCCTCCTGA

mRNA sequence

ATGGCCGAGAACCTCTTCGAAGGCCTTCCACCGCCGATTTCAGCGACAAACCCTTCGCCGGAGACCCAATTACCAGACGCAGCCACCAATCAAAGTCGGCCCTCTGAACCTTCTACCAATCCCGCCGCTTCTTCTTCTTCTTCTCCGGCGCCGGTCATCAAGAGCGCCCTCAAGCGCCCGAAGACTGCCCAAGAACCCAACCCCGCAGGTCTTCTGTTCTCCTCCTGA

Coding sequence (CDS)

ATGGCCGAGAACCTCTTCGAAGGCCTTCCACCGCCGATTTCAGCGACAAACCCTTCGCCGGAGACCCAATTACCAGACGCAGCCACCAATCAAAGTCGGCCCTCTGAACCTTCTACCAATCCCGCCGCTTCTTCTTCTTCTTCTCCGGCGCCGGTCATCAAGAGCGCCCTCAAGCGCCCGAAGACTGCCCAAGAACCCAACCCCGCAGGTCTTCTGTTCTCCTCCTGA

Protein sequence

MAENLFEGLPPPISATNPSPETQLPDAATNQSRPSEPSTNPAASSSSSPAPVIKSALKRPKTAQEPNPAGLLFSS
Homology
[Close]
BLAST of Lsi06G007920 vs. TrEMBL
Match: A0A0A0M0Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690250 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-18
Identity = 56/69 (81.16%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 1  MAENLFEGLPPPISATNPSPETQLPDAATNQSRPSEPSTNPAASSSSSPAPVIKSALKRP 60
          MAENLFEGLPPPISATN SPETQLPDA TNQ RPS+PSTN        PAPVIKSALKRP
Sbjct: 1  MAENLFEGLPPPISATNLSPETQLPDAPTNQIRPSDPSTN--------PAPVIKSALKRP 60

Query: 61 KTAQEPNPA 70
          KTAQEPN A
Sbjct: 61 KTAQEPNSA 61

[Close]
BLAST of Lsi06G007920 vs. NCBI nr
Match: gi|659125491|ref|XP_008462709.1| (PREDICTED: uncharacterized protein LOC103501010 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 7.6e-19
Identity = 59/69 (85.51%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MAENLFEGLPPPISATNPSPETQLPDAATNQSRPSEPSTNPAASSSSSPAPVIKSALKRP 60
          MAENLFEGLPPPISATN  PET LPDA TNQ RPS+PS NP A SSSSPAPVIKSALKRP
Sbjct: 1  MAENLFEGLPPPISATNLLPETLLPDAPTNQIRPSDPSINP-APSSSSPAPVIKSALKRP 60

Query: 61 KTAQEPNPA 70
          KTAQEPN A
Sbjct: 61 KTAQEPNSA 68

[Close]
BLAST of Lsi06G007920 vs. NCBI nr
Match: gi|449449551|ref|XP_004142528.1| (PREDICTED: uncharacterized protein LOC101212234 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 56/69 (81.16%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 1  MAENLFEGLPPPISATNPSPETQLPDAATNQSRPSEPSTNPAASSSSSPAPVIKSALKRP 60
          MAENLFEGLPPPISATN SPETQLPDA TNQ RPS+PSTN        PAPVIKSALKRP
Sbjct: 1  MAENLFEGLPPPISATNLSPETQLPDAPTNQIRPSDPSTN--------PAPVIKSALKRP 60

Query: 61 KTAQEPNPA 70
          KTAQEPN A
Sbjct: 61 KTAQEPNSA 61

The following BLAST results are available for this feature:
BLAST of Lsi06G007920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G007920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0Y5_CUCSA3.4e-1881.16Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690250 PE=4 SV=1[more]
BLAST of Lsi06G007920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125491|ref|XP_008462709.1|7.6e-1985.51PREDICTED: uncharacterized protein LOC103501010 [Cucumis melo][more]
gi|449449551|ref|XP_004142528.1|4.9e-1881.16PREDICTED: uncharacterized protein LOC101212234 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007920.1Lsi06G007920.1mRNA