Lsi06G007600 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA 3' terminal phosphate cyclase, putative
Location	chr06 : 14332657 .. 14334019 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTATTGAAGGGAAGCCAAAGCCTAAGGCAAAGATTGGTACTGGCAACATTGAGCCGCACTCCAATTCGAATCGTGGACATTCGAACGAACCAGACCTGGAAAGGCCTTCAACCCCACGAGCTCTCGTTGCTTGAATTGTTGAAGAAGCTCTGCGATGACTGGTTCATCGAAATCAATGATAGCGGTACACTACCTCTTATCATTCCTTTTCCTTTTTCTTTGGTTCTGTATCTGTTGATTTTTTTGTTGTTTTATAATTATTTTCTTTCTTTGCTTCTCTACGTAGGCACGGAAGTGAAGTACAAGCCTGGGATTGTAATGGGTGGAACACGTTTGGTGCACGATTGTGGTAGTTGTGCCATTGGTTATTTTCTTGAGCCATTGATTCTTCTTGCTTTGTTTGGCAGAAACCCCCTCTCCATCGAGCTGAAAGGTTAGTCTAAGTTTTGAGTTGCTCAATGATTTGTGATTTTTGAAACTGTCAAGAAAATATGAGTGCAAATTTTACTTGTGTAGCTCTTTGAATAATACAACTTATTTTTCTCACTGAATACACCAGATAATAATGTATAATTGTTACTTTGAGATAATTCTTCTTTTTTCTTTTGTGTAATGGTACTTCCAATCTCATTGATATATATTCGACTTGTTTAGGTATTACAAATAATTCAGAGCACCCATCAGTTGATACTTTCATATCAACAACCTTGCCCATGTTAAAGCGCTTTGGAGTTAACCCAAAAAGAATTGAAATTGAGGATAGAAAGTCGCGAAGTGCCACCCCATGGTGGTGGAAAAGTGACTTTGACCATCCCAACTGTTAAAAGTTTATCTGTGAGTTGGATCTTTTGATGTATTCTTTGATTTCATTGATCTCATATGACATTTAAAAAAATATATGATGTGGGAAAGTATAGTTGCAGTTGATCAAGGTTATTGATGTTGTACTGTGAATTGGAGTGCCTTGATTAATTCACTTTTAAACTGGTGGATGCCTACCTTTTGTATGATTGTTTCCTTTTTTAGTCCTTAGTCTCAAAGGTCTTTAAAATTTTCCATTTCACTTTATAACATATATTTTTTTTTCCTTTTGTTTTTCATTAAAAAAGAGGTTGTTAATGTTGTTGTACAGGCAGTAGTTTGGACTGATAGAGGATTGGTCAAAAGAATTAGAGGGGTTTCATTTTCTACTAGAGTTTTTTCTCAAGTTGAGCATGCTATGATAACTGCAGTTCGTGGAGTGCTTAATCCTCACATTCGAGATGTGCACATATTCACTGATCATAGAAAAGGCCCTCAAGCTGGAAAGTATGCTTTCTTTTTGCTTTGA

mRNA sequence

ATGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTATTGAAGGGAAGCCAAAGCCTAAGGCAAAGATTGGTACTGGCAACATTGAGCCGCACTCCAATTCGAATCGTGGACATTCGAACGAACCAGACCTGGAAAGGCCTTCAACCCCACGAGCTCTCGTTGCTTGAATTGTTGAAGAAGCTCTGCGATGACTGGTTCATCGAAATCAATGATAGCGGCACGGAAGTGAAGTACAAGCCTGGGATTGTAATGGGTGGAACACGTTTGGTGCACGATTGTGGTAGTTGTGCCATTGGTTATTTTCTTGAGCCATTGATTCTTCTTGCTTTGTTTGGCAGAAACCCCCTCTCCATCGAGCTGAAAGTAGTTTGGACTGATAGAGGATTGGTCAAAAGAATTAGAGGGGTTTCATTTTCTACTAGAGTTTTTTCTCAAGTTGAGCATGCTATGATAACTGCAGTTCGTGGAGTGCTTAATCCTCACATTCGAGATGTGCACATATTCACTGATCATAGAAAAGGCCCTCAAGCTGGAAAGTATGCTTTCTTTTTGCTTTGA

Coding sequence (CDS)

ATGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTATTGAAGGGAAGCCAAAGCCTAAGGCAAAGATTGGTACTGGCAACATTGAGCCGCACTCCAATTCGAATCGTGGACATTCGAACGAACCAGACCTGGAAAGGCCTTCAACCCCACGAGCTCTCGTTGCTTGAATTGTTGAAGAAGCTCTGCGATGACTGGTTCATCGAAATCAATGATAGCGGCACGGAAGTGAAGTACAAGCCTGGGATTGTAATGGGTGGAACACGTTTGGTGCACGATTGTGGTAGTTGTGCCATTGGTTATTTTCTTGAGCCATTGATTCTTCTTGCTTTGTTTGGCAGAAACCCCCTCTCCATCGAGCTGAAAGTAGTTTGGACTGATAGAGGATTGGTCAAAAGAATTAGAGGGGTTTCATTTTCTACTAGAGTTTTTTCTCAAGTTGAGCATGCTATGATAACTGCAGTTCGTGGAGTGCTTAATCCTCACATTCGAGATGTGCACATATTCACTGATCATAGAAAAGGCCCTCAAGCTGGAAAGTATGCTTTCTTTTTGCTTTGA

Protein sequence

MLEEEEEEEEEVLKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSGTEVKYKPGIVMGGTRLVHDCGSCAIGYFLEPLILLALFGRNPLSIELKVVWTDRGLVKRIRGVSFSTRVFSQVEHAMITAVRGVLNPHIRDVHIFTDHRKGPQAGKYAFFLL

Homology

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BLAST of Lsi06G007600 vs. Swiss-Prot
Match: RCL1_ARATH (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.7e-32
Identity = 66/115 (57.39%), Postives = 89/115 (77.39%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           +KGSQS RQRL+L+TLS TPI I +IR ++T  GL+PHE++LL LL+ + DD  ++IN++
Sbjct: 7   MKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDINET 66

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIELKVVWTD 127
           GT +KYKPG ++GG  LVH C  S +IGY+LEPL+LL LFG+ PLSI LK +  D
Sbjct: 67  GTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITND 121

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BLAST of Lsi06G007600 vs. Swiss-Prot
Match: RCL1_SCHPO (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.06c PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.9e-20
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 14  KGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSG 73
           KG + L  RLVLATLS TPIR+  I  ++   G++ +++S L LL+KL +   IEI+ +G
Sbjct: 10  KGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISYTG 69

Query: 74  TEVKYKPGIVMGGTRLVHDCGSC-AIGYFLEPLILLALFGRNPLSIEL 121
           T   Y+PG ++GG R+VHDC +   IGYFLEP+++L LF + P S+ L
Sbjct: 70  TSFIYRPGNIIGG-RVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTL 116

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BLAST of Lsi06G007600 vs. Swiss-Prot
Match: RCL1_DICDI (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 14  KGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSG 73
           +GS   RQR++ +TLS   IRI +IR      GL+ +E S L L+ K+ +   IEIN +G
Sbjct: 5   QGSTHFRQRIICSTLSGKAIRITNIRDEDEKPGLRDYEASFLRLVDKITNGSKIEINSTG 64

Query: 74  TEVKYKPGIVMGGTRLVHDCGSC-AIGYFLEPLILLALFGRNPLSIEL 121
           T++ Y PGI++GG  + H+CG+   IGYF+E LI L  F + PL I L
Sbjct: 65  TQITYIPGIIIGGKGITHECGTVRGIGYFVEALICLGPFAKAPLDITL 112

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BLAST of Lsi06G007600 vs. Swiss-Prot
Match: RCL1_DROME (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 9.3e-18
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 1


Query: 12  VLKGSQSLRQRLVLATLSRTPIRIVDIRT-NQTWKGLQPHELSLLELLKKLCDDWFIEIN 71
           + +GS  L+QRL+LA LS  P++I  IR+ ++T  GL+ +E+SL+ LL K+ +   IE+N
Sbjct: 12  IYRGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELN 71

Query: 72  DSGTEVKYKPGIVMGGTRLVHD-CGSCAIGYFLEPLILLALFGRNPLSIELKVVWT--DR 131
            +GT V + PG++ GG +L HD C    IGY+L+ LI L  F ++PL   L+ V    D 
Sbjct: 72  PAGTSVMFSPGLLHGG-QLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDS 131

Query: 132 GLVKRIRGVSFS 140
             V  I+G + S
Sbjct: 132 PSVDHIKGAALS 142

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BLAST of Lsi06G007600 vs. Swiss-Prot
Match: RCL1_YEAST (RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.3e-18
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 1


Query: 14  KGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSG 73
           +GSQ+ R R+VLATLS  PI+I  IR+     GL+ +E+S L L++ + +   IEI+ +G
Sbjct: 12  QGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTG 71

Query: 74  TEVKYKPGIVMGGTRLVHDC-GSCAIGYFLEPLILLALFGRNPLSIELKVV---WTDRGL 133
           T V Y+PGI++GG    H C  S  +GYF+EP++ LA F +   SI  K +     D G+
Sbjct: 72  TTVIYRPGIIVGGAS-THICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGI 131

Query: 134 VKRIRGVSFSTRVFSQVEHAMITAVRGVLNPHIRDVHIFTD 171
                G+      F   E A+ T  RG       +VH+  D
Sbjct: 132 EAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVD 171

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BLAST of Lsi06G007600 vs. TrEMBL
Match: A0A0A0LXL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633410 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-49
Identity = 117/228 (51.32%), Postives = 135/228 (59.21%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           L+GSQ LRQ LVLATLSRTP+RI DIR N    GL+P+E SLL+LL+K+CDD FI+IN++
Sbjct: 9   LRGSQILRQNLVLATLSRTPVRIHDIRPNTISPGLRPYEKSLLDLLEKICDDCFIDINET 68

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLI------------------------- 132
           GT +KYKPGIVMGG  L HDCG + +IGYFLEPLI                         
Sbjct: 69  GTILKYKPGIVMGGKNLEHDCGLTRSIGYFLEPLILLALFGSKPLSIKLKGITNDSKDPS 128

Query: 133 ----------LLALFGRNPLSIELK--------------------------VVWTDRGLV 179
                     +L  FG NP  + LK                          V WTD G+V
Sbjct: 129 VDTFQSTTLPMLKRFGVNPDDVNLKIESRGVPPLGGGEVILTIPTVKSFSAVSWTDEGMV 188

[Close]

BLAST of Lsi06G007600 vs. TrEMBL
Match: A0A0K9QPP5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161710 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-40
Identity = 107/241 (44.40%), Postives = 134/241 (55.60%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKK------------ 72
           L+GSQ+LR RL+L+TLS TPI IVDIR+N+T  GL PHE+SLL L++K            
Sbjct: 9   LQGSQNLRLRLLLSTLSSTPILIVDIRSNETIPGLLPHEISLLRLIEKVCDDCHVEINET 68

Query: 73  LCDDWFIEINDSGTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIE 132
           +CDD  +EIN++GT++KYKPGIVMGG  LVHDCG S +IGYFLEPL++L LFG+ PLSI 
Sbjct: 69  VCDDCHVEINETGTKLKYKPGIVMGGKYLVHDCGLSRSIGYFLEPLVVLGLFGKKPLSIR 128

Query: 133 LKVVWTD------------------------RGLVKRI--RGVS---------------- 179
           LK +  D                         GL  +I  RGV                 
Sbjct: 129 LKGITNDSKDPSIDTFRSTTLNILKRFGVPSEGLELKIENRGVPPLGGGEVVLSVPIVHT 188

[Close]

BLAST of Lsi06G007600 vs. TrEMBL
Match: A0A0J8CGR0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110520 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.6e-40
Identity = 103/229 (44.98%), Postives = 130/229 (56.77%), Query Frame = 1


Query: 14  KGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSG 73
           +GSQ+LR RL+L+TLS TPI I  IR+N+T  GL+PHE+SLL LL+K+CDD  +EIN++G
Sbjct: 10  QGSQNLRLRLLLSTLSSTPILIDQIRSNETIPGLRPHEVSLLRLLEKVCDDCHVEINETG 69

Query: 74  TEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIELKVVWTD------ 133
           T++KYKPGIVMGG  L HDCG S +IGYFLEPLI+L LFG+ PLSI LK +  D      
Sbjct: 70  TKLKYKPGIVMGGKYLTHDCGLSRSIGYFLEPLIVLGLFGKRPLSINLKGITNDAKDPSV 129

Query: 134 ------------------RGLVKRI--RGVS----------------------------- 180
                              GL  +I  RGV                              
Sbjct: 130 DTFRSTTLNILKRFGVPSEGLQLKIESRGVPPLGGGEVALSVPIVHSNLTAVNWIDEGMV 189

[Close]

BLAST of Lsi06G007600 vs. TrEMBL
Match: S8E9A5_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_02311 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.0e-40
Identity = 102/230 (44.35%), Postives = 126/230 (54.78%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           LKGS+SLR RL+L+TLS TPI I DI    TW GL+PHE+SLL LL+K+ DD  +EIN++
Sbjct: 9   LKGSRSLRLRLLLSTLSSTPILIEDIHAEDTWPGLRPHEVSLLRLLEKVSDDCVVEINET 68

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYF--------------------------LEPL 132
           GT++KYKPGIV GG  L+HDCG S +IGYF                           +P 
Sbjct: 69  GTKLKYKPGIVTGGRNLIHDCGTSRSIGYFMEPLIVLGLFGKKPLNIRLKGITNDAKDPS 128

Query: 133 I---------LLALFGRNPLSIELK---------------------------VVWTDRGL 180
           +         +L  FG     + LK                           V W D G+
Sbjct: 129 VDTFKSTTLPMLKQFGVPSEGLGLKIESRGVRPHGGGEVVLSIPIVQDSLKAVTWIDEGM 188

[Close]

BLAST of Lsi06G007600 vs. TrEMBL
Match: A0A072TW41_MEDTR (RNA 3-terminal phosphate cyclase-like protein, putative OS=Medicago truncatula GN=MTR_8g098715 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-36
Identity = 101/238 (42.44%), Postives = 126/238 (52.94%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           LKGSQS RQRL+L+TLS TPI I DIR NQT+ GL  HE+SLL L   + D   +EI ++
Sbjct: 9   LKGSQSFRQRLLLSTLSSTPITIEDIRPNQTYSGLAKHEISLLRLFDTVSDGCIVEIYET 68

Query: 73  GTEVKYKPGIVMGGTRLVH--DCG-SCAIGYFLEPLILLALFGRNPLSIELKVVWTDR-- 132
           GT++KYKPG +MGG R+ H   C  S +IGY+LEPLI+L LF + PL+I LK +  D   
Sbjct: 69  GTKLKYKPGTIMGG-RVNHPFQCDVSRSIGYYLEPLIVLCLFAKEPLNIRLKGITNDSKD 128

Query: 133 -----------GLVKRIRGVSFS------------------------------------- 186
                       ++KR  GV F                                      
Sbjct: 129 PSVDTFKSAAFHILKRF-GVDFEAMSLKIESRGLPPNGGGEVVLSLPIVQSLTAVNWIDE 188

[Close]

BLAST of Lsi06G007600 vs. TAIR10
Match: AT5G22100.1 (AT5G22100.1 RNA cyclase family protein)

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-33
Identity = 66/115 (57.39%), Postives = 89/115 (77.39%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           +KGSQS RQRL+L+TLS TPI I +IR ++T  GL+PHE++LL LL+ + DD  ++IN++
Sbjct: 7   MKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDINET 66

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIELKVVWTD 127
           GT +KYKPG ++GG  LVH C  S +IGY+LEPL+LL LFG+ PLSI LK +  D
Sbjct: 67  GTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITND 121

[Close]

BLAST of Lsi06G007600 vs. NCBI nr
Match: gi|449442617|ref|XP_004139077.1| (PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 7.8e-49
Identity = 117/228 (51.32%), Postives = 135/228 (59.21%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           L+GSQ LRQ LVLATLSRTP+RI DIR N    GL+P+E SLL+LL+K+CDD FI+IN++
Sbjct: 9   LRGSQILRQNLVLATLSRTPVRIHDIRPNTISPGLRPYEKSLLDLLEKICDDCFIDINET 68

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLI------------------------- 132
           GT +KYKPGIVMGG  L HDCG + +IGYFLEPLI                         
Sbjct: 69  GTILKYKPGIVMGGKNLEHDCGLTRSIGYFLEPLILLALFGSKPLSIKLKGITNDSKDPS 128

Query: 133 ----------LLALFGRNPLSIELK--------------------------VVWTDRGLV 179
                     +L  FG NP  + LK                          V WTD G+V
Sbjct: 129 VDTFQSTTLPMLKRFGVNPDDVNLKIESRGVPPLGGGEVILTIPTVKSFSAVSWTDEGMV 188

[Close]

BLAST of Lsi06G007600 vs. NCBI nr
Match: gi|593794271|ref|XP_007160174.1| (hypothetical protein PHAVU_002G299100g [Phaseolus vulgaris])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 102/216 (47.22%), Postives = 129/216 (59.72%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           L GSQ+ RQRL+LATLS TPI I DIR ++TW GL+ HE+SLL L + +CDD  +EIN++
Sbjct: 9   LLGSQNFRQRLLLATLSSTPILIEDIRADETWPGLRDHEISLLRLFETVCDDCHVEINET 68

Query: 73  GTEVKYKPGIVMGGTR-LVHDCG-SCAIGYFLEPLILLAL-------------------- 132
           GT++KYKPG ++GG +   HDCG S AIGYFLEPL +L +                    
Sbjct: 69  GTKLKYKPGTIIGGRQHSAHDCGVSPAIGYFLEPLTVLWITNDSKDPSVDTFKSTALPIL 128

Query: 133 --FGRNPLSIELK--------------------------VVWTDRGLVKRIRGVSFSTRV 179
             FG    S+ELK                          V W D G VK+IRG +FSTRV
Sbjct: 129 KRFGVPSESLELKVESRGLPPNGGGEVILSLPVVQSLAAVSWIDEGFVKKIRGTTFSTRV 188

[Close]

BLAST of Lsi06G007600 vs. NCBI nr
Match: gi|902175187|gb|KNA08546.1| (hypothetical protein SOVF_161710 [Spinacia oleracea])

HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40
Identity = 107/241 (44.40%), Postives = 134/241 (55.60%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKK------------ 72
           L+GSQ+LR RL+L+TLS TPI IVDIR+N+T  GL PHE+SLL L++K            
Sbjct: 9   LQGSQNLRLRLLLSTLSSTPILIVDIRSNETIPGLLPHEISLLRLIEKVCDDCHVEINET 68

Query: 73  LCDDWFIEINDSGTEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIE 132
           +CDD  +EIN++GT++KYKPGIVMGG  LVHDCG S +IGYFLEPL++L LFG+ PLSI 
Sbjct: 69  VCDDCHVEINETGTKLKYKPGIVMGGKYLVHDCGLSRSIGYFLEPLVVLGLFGKKPLSIR 128

Query: 133 LKVVWTD------------------------RGLVKRI--RGVS---------------- 179
           LK +  D                         GL  +I  RGV                 
Sbjct: 129 LKGITNDSKDPSIDTFRSTTLNILKRFGVPSEGLELKIENRGVPPLGGGEVVLSVPIVHT 188

[Close]

BLAST of Lsi06G007600 vs. NCBI nr
Match: gi|731333776|ref|XP_010677903.1| (PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 172.6 bits (436), Expect = 6.6e-40
Identity = 103/229 (44.98%), Postives = 130/229 (56.77%), Query Frame = 1


Query: 14  KGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDSG 73
           +GSQ+LR RL+L+TLS TPI I  IR+N+T  GL+PHE+SLL LL+K+CDD  +EIN++G
Sbjct: 10  QGSQNLRLRLLLSTLSSTPILIDQIRSNETIPGLRPHEVSLLRLLEKVCDDCHVEINETG 69

Query: 74  TEVKYKPGIVMGGTRLVHDCG-SCAIGYFLEPLILLALFGRNPLSIELKVVWTD------ 133
           T++KYKPGIVMGG  L HDCG S +IGYFLEPLI+L LFG+ PLSI LK +  D      
Sbjct: 70  TKLKYKPGIVMGGKYLTHDCGLSRSIGYFLEPLIVLGLFGKRPLSINLKGITNDAKDPSV 129

Query: 134 ------------------RGLVKRI--RGVS----------------------------- 180
                              GL  +I  RGV                              
Sbjct: 130 DTFRSTTLNILKRFGVPSEGLQLKIESRGVPPLGGGEVALSVPIVHSNLTAVNWIDEGMV 189

[Close]

BLAST of Lsi06G007600 vs. NCBI nr
Match: gi|527207061|gb|EPS72448.1| (hypothetical protein M569_02311 [Genlisea aurea])

HSP 1 Score: 172.2 bits (435), Expect = 8.6e-40
Identity = 102/230 (44.35%), Postives = 126/230 (54.78%), Query Frame = 1


Query: 13  LKGSQSLRQRLVLATLSRTPIRIVDIRTNQTWKGLQPHELSLLELLKKLCDDWFIEINDS 72
           LKGS+SLR RL+L+TLS TPI I DI    TW GL+PHE+SLL LL+K+ DD  +EIN++
Sbjct: 9   LKGSRSLRLRLLLSTLSSTPILIEDIHAEDTWPGLRPHEVSLLRLLEKVSDDCVVEINET 68

Query: 73  GTEVKYKPGIVMGGTRLVHDCG-SCAIGYF--------------------------LEPL 132
           GT++KYKPGIV GG  L+HDCG S +IGYF                           +P 
Sbjct: 69  GTKLKYKPGIVTGGRNLIHDCGTSRSIGYFMEPLIVLGLFGKKPLNIRLKGITNDAKDPS 128

Query: 133 I---------LLALFGRNPLSIELK---------------------------VVWTDRGL 180
           +         +L  FG     + LK                           V W D G+
Sbjct: 129 VDTFKSTTLPMLKQFGVPSEGLGLKIESRGVRPHGGGEVVLSIPIVQDSLKAVTWIDEGM 188

The following BLAST results are available for this feature:

BLAST of Lsi06G007600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCL1_ARATH	8.7e-32	57.39	Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana ...	[more]
RCL1_SCHPO	9.9e-20	47.22	Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces p...	[more]
RCL1_DICDI	8.4e-19	44.44	Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoid...	[more]
RCL1_DROME	9.3e-18	40.91	Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogast...	[more]
RCL1_YEAST	9.3e-18	37.27	RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of Lsi06G007600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXL4_CUCSA	5.4e-49	51.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633410 PE=4 SV=1	[more]
A0A0K9QPP5_SPIOL	2.7e-40	44.40	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161710 PE=4 SV=1	[more]
A0A0J8CGR0_BETVU	4.6e-40	44.98	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110520 PE=4 S...	[more]
S8E9A5_9LAMI	6.0e-40	44.35	Uncharacterized protein OS=Genlisea aurea GN=M569_02311 PE=4 SV=1	[more]
A0A072TW41_MEDTR	6.9e-36	42.44	RNA 3-terminal phosphate cyclase-like protein, putative OS=Medicago truncatula G...	[more]

BLAST of Lsi06G007600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22100.1	4.9e-33	57.39	RNA cyclase family protein	[more]

BLAST of Lsi06G007600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442617\|ref\|XP_004139077.1\|	7.8e-49	51.32	PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Cucumis sati...	[more]
gi\|593794271\|ref\|XP_007160174.1\|	2.9e-43	47.22	hypothetical protein PHAVU_002G299100g [Phaseolus vulgaris]	[more]
gi\|902175187\|gb\|KNA08546.1\|	3.9e-40	44.40	hypothetical protein SOVF_161710 [Spinacia oleracea]	[more]
gi\|731333776\|ref\|XP_010677903.1\|	6.6e-40	44.98	PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Beta vulgari...	[more]
gi\|527207061\|gb\|EPS72448.1\|	8.6e-40	44.35	hypothetical protein M569_02311 [Genlisea aurea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR023797	RNA3'_phos_cyclase_dom
IPR013792	RNA3'P_cycl/enolpyr_Trfase_a/b
IPR013791	RNA3'-term_phos_cycl_insert
IPR000228	RNA3'_term_phos_cyc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007600.1	Lsi06G007600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000228	RNA 3'-terminal phosphate cyclase	PANTHER	PTHR11096	RNA 3' TERMINAL PHOSPHATE CYCLASE	coord: 13..184 score: 8.1
IPR013791	RNA 3'-terminal phosphate cyclase, insert domain	PFAM	PF05189	RTC_insert	coord: 125..179 score: 6.3
IPR013792	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	unknown	SSF55205	EPT/RTPC-like	coord: 15..176 score: 1.5
IPR023797	RNA 3'-terminal phosphate cyclase domain	GENE3D	G3DSA:3.65.10.20		coord: 14..121 score: 5.2
IPR023797	RNA 3'-terminal phosphate cyclase domain	PFAM	PF01137	RTC	coord: 14..121 score: 6.5
None	No IPR available	PRODOM	PD397608		coord: 135..183 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 2..22 scor
None	No IPR available	PANTHER	PTHR11096:SF1	RNA 3'-TERMINAL PHOSPHATE CYCLASE-LIKE PROTEIN	coord: 13..184 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007600	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007600	Cucurbita maxima (Rimu)	cmalsiB078
Lsi06G007600	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007600	Cucurbita moschata (Rifu)	cmolsiB064
Lsi06G007600	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007600	Cucurbita pepo (Zucchini)	cpelsiB304
Lsi06G007600	Cucurbita pepo (Zucchini)	cpelsiB559
Lsi06G007600	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007600	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007600	Cucumber (Chinese Long) v2	culsiB081
Lsi06G007600	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007600	Melon (DHL92) v3.5.1	lsimeB410
Lsi06G007600	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007600	Watermelon (97103) v1	lsiwmB391
Lsi06G007600	Watermelon (97103) v1	lsiwmB398
Lsi06G007600	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007600	Melon (DHL92) v3.6.1	lsimedB432
Lsi06G007600	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007600	Silver-seed gourd	carlsiB251
Lsi06G007600	Silver-seed gourd	carlsiB830
Lsi06G007600	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007600	Watermelon (97103) v2	lsiwmbB362
Lsi06G007600	Wax gourd	lsiwgoB521
Lsi06G007600	Wax gourd	lsiwgoB531