Lsi06G007530 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 13953388 .. 13954988 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCCGGGGTATTCGCCCAAACCACCCCTAGCGAAGACTCGTGGGAAGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTTGCTTGGCCTAAAAGGTCTGAGGTTTCACTTCTGCATTCTCCTCGATTAGAGTTTGTTAATAACGATTCAGAAGATTTGAAGGGTTTATGGGAGAAGTTGGAGCATAGAACGAAATTTGCAGGGGCATATGGGAACATCGCAGATCTCATGTATACAAACATCAACACACAGGCATTGCAGGCTTTGGCACATTTTTGGGATCCTATATTGAAATGCTTCACGTTCAATACGTTTGATCTAACTCCCACTATAGAAGAATATCGAGCTCTCCTTAGCATACCACTTTGCACCGGTAGTAAGGTTTATGTTTATGATCGAAAGCTGACTATGCAGAGGTCATTGTCCAAGTTTTTGGGTGATGTTCATGCCTCTGATATGAAGAAGCAGATGAAGATGAAAGGGGGAAGGAGTTGTATCCCTATTGATTATTTGATTGGCCTTACACGTGCATTTTTGCCTGGGAAGAAGGGCTTGTCGCTCTTGGCGTTATGCATTTACAGTATGGTTATCTTTCCAAGAATTAAATGCTACGTAGAAGAAGAAGTCGTTAAACTCTTCACTGGAATAGAAAGAGGCGTGAACCCTGTTATCCCAATTATGGCAGAAACCTTTAGATCATTAAACTACTGCCAAGTCCAAGGGAAGGGAAAGTTTTTCAATTGCGCCCCAATGCTGTTCATATGGATTTCCAGTCATCTGAGGTATCCTGCTGGGTTTGGGTATTCTCGGATAAAGTTTAGTAGCCCATGGAACACCACAAGAAACACTATCAGAGATTTCAATTCCGCATGCTGGAGTTCAGACATTCTGAATCGCAAAATTTGGATGCATTTCTTAGGCCACCTAACATTAGATGAGGTAATTTGGAGGGCGCCATGGGTACCCACAAGTCCTTTAACATACCGTTGTGGGCAGTTACCATTCGTCCCATTATTAGGCCTGTGGGGAGGAATTGCTTATTCTCCCCTTTTGGTTCTGCGCCAGCTATGGTCAAAGCAATTCACACCATTTGTCCATGGTTTAGAAGATTGGGATTTCTCGTACGAATCTGATGAAACCAGTGCCAAGGTTCATAAAGCGGTGGAAGCATGGAAATTGGTCAGAATAATGAAGAGCCCACGACATTGCGAGGGCACTACAGCACAGTATGACAATTGGAGAGCAACCAGGAGCAGAGTCGAAGTTGCTATTATGCAGGAGTCAGTGAATTCGAGCAGAACTTTGAACGTAGGCCATGAAAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCTTAGCAACAGAAATTGAAGAGTTGAGGAAAGAGGTTAGAAGATTGGTCCAACAAGCTACCAGTGCCCAGAGGCAATTGGAAGAGGCAAAGCAGTGTCTCCAAAAGCAGCCAGAGTTGGAGAGGGAGATAGATTCTTTGAACATCGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGTTGTGTTGCATAATGAGGCAGAAGCATAA

mRNA sequence

ATGCGCCCGGGGTATTCGCCCAAACCACCCCTAGCGAAGACTCGTGGGAAGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTTGCTTGGCCTAAAAGAAGATTGGGATTTCTCGTACGAATCTGATGAAACCAGTGCCAAGGTTCATAAAGCGGTGGAAGCATGGAAATTGGTCAGAATAATGAAGAGCCCACGACATTGCGAGGGCACTACAGCACAGTATGACAATTGGAGAGCAACCAGGAGCAGAGTCGAAGTTGCTATTATGCAGGAGTCAGTGAATTCGAGCAGAACTTTGAACGTAGGCCATGAAAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCTTAGCAACAGAAATTGAAGAGTTGAGGAAAGAGGTTAGAAGATTGGTCCAACAAGCTACCAGTGCCCAGAGGCAATTGGAAGAGGCAAAGCAGTGTCTCCAAAAGCAGCCAGAGTTGGAGAGGGAGATAGATTCTTTGAACATCGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGTTGTGTTGCATAATGAGGCAGAAGCATAA

Coding sequence (CDS)

ATGCGCCCGGGGTATTCGCCCAAACCACCCCTAGCGAAGACTCGTGGGAAGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTTGCTTGGCCTAAAAGAAGATTGGGATTTCTCGTACGAATCTGATGAAACCAGTGCCAAGGTTCATAAAGCGGTGGAAGCATGGAAATTGGTCAGAATAATGAAGAGCCCACGACATTGCGAGGGCACTACAGCACAGTATGACAATTGGAGAGCAACCAGGAGCAGAGTCGAAGTTGCTATTATGCAGGAGTCAGTGAATTCGAGCAGAACTTTGAACGTAGGCCATGAAAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCTTAGCAACAGAAATTGAAGAGTTGAGGAAAGAGGTTAGAAGATTGGTCCAACAAGCTACCAGTGCCCAGAGGCAATTGGAAGAGGCAAAGCAGTGTCTCCAAAAGCAGCCAGAGTTGGAGAGGGAGATAGATTCTTTGAACATCGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGTTGTGTTGCATAATGAGGCAGAAGCATAA

Protein sequence

MRPGYSPKPPLAKTRGKVWHNGQSNFNKSQDLLGLKEDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA

Homology

[Close]

BLAST of Lsi06G007530 vs. TrEMBL
Match: A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 51/77 (66.23%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 120 MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKK 179
           M+ VLATE E LRKEV+R VQ+AT+++RQLEEA++ LQ+Q ELE++++SLNIEAIQ++KK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 180 NKRLLGDIVVLHNEAEA 197
           NKRLL DI  +H+EAEA
Sbjct: 61  NKRLLRDIATMHSEAEA 77

[Close]

BLAST of Lsi06G007530 vs. TrEMBL
Match: A0A0A0KP72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 37  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQE 96
           EDWDFSYE+DE   KV + +E WK+VR +KS RHC+GTT QYD WRA R+  E A + +
Sbjct: 59  EDWDFSYEADEMIVKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFATIPQ 117

[Close]

BLAST of Lsi06G007530 vs. NCBI nr
Match: gi|700210231|gb|KGN65327.1| (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 9.2e-16
Identity = 51/77 (66.23%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 120 MNQVLATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKK 179
           M+ VLATE E LRKEV+R VQ+AT+++RQLEEA++ LQ+Q ELE++++SLNIEAIQ++KK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 180 NKRLLGDIVVLHNEAEA 197
           NKRLL DI  +H+EAEA
Sbjct: 61  NKRLLRDIATMHSEAEA 77

[Close]

BLAST of Lsi06G007530 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 93  MQESVNSSRTLNVGHENREKDLERLKEMNQVLATEIEELRKEVRRLVQQATSAQRQLEEA 152
           M ES+  +  L   H+ +EK+L+RL+EMN VLATE E+LR+EV++ VQQA + QR L+EA
Sbjct: 1   MSESLVPNIELKKYHD-QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEA 60

Query: 153 KQCLQKQPELEREIDSLNIEAIQMKKKNKRLLGDIVVLHNEAEA 197
           K   +K+ ELE+E DSLN EAIQ++KKNKRLL +I  LH E EA
Sbjct: 61  K---RKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEA 100

[Close]

BLAST of Lsi06G007530 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 59/187 (31.55%), Postives = 97/187 (51.87%), Query Frame = 1


Query: 23  QSNFNKSQDLLGLKEDW-----------------DFSYESDETSAKVHKAVEAWKLVRIM 82
           +S FN+  D+L   E+                  DFSY+ +    K  +AV AWK +R +
Sbjct: 8   ESKFNEPSDVLKWAEEMQQNLGTFIPPTHNLQESDFSYDPNNCQGKKRQAVCAWKSIRKI 67

Query: 83  KSPRHCEGTTAQYDNWRATRSRVEVAIMQESVNSSRTLNVGHENR--EKDLERLKEMNQV 142
           K   H EG T++Y+ W+A R    + I +E V   +  +    N+  EK + +LKE N++
Sbjct: 68  KDKGHYEGVTSEYETWQANRRNNIIDISREVVERGKETSFEQPNQRIEKSI-KLKEKNRL 127

Query: 143 LATEIEELRKEVRRLVQQATSAQRQLEEAKQCLQKQPELEREIDSLNIEAIQMKKKNKRL 191
           L  E E+LRKE  + +  AT  Q +LE+ K  L+ Q +LE+++++ + E  +M K N+ L
Sbjct: 128 LEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETSDKEMRRMNKANRSL 187

[Close]

BLAST of Lsi06G007530 vs. NCBI nr
Match: gi|700196231|gb|KGN51408.1| (hypothetical protein Csa_5G528450 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 37  EDWDFSYESDETSAKVHKAVEAWKLVRIMKSPRHCEGTTAQYDNWRATRSRVEVAIMQE 96
           EDWDFSYE+DE   KV + +E WK+VR +KS RHC+GTT QYD WRA R+  E A + +
Sbjct: 59  EDWDFSYEADEMIVKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFATIPQ 117

The following BLAST results are available for this feature:

BLAST of Lsi06G007530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G007530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU7_CUCSA	6.4e-16	66.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1	[more]
A0A0A0KP72_CUCSA	2.1e-11	57.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1	[more]

BLAST of Lsi06G007530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G007530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210231\|gb\|KGN65327.1\|	9.2e-16	66.23	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]
gi\|659128749\|ref\|XP_008464352.1\|	1.0e-14	56.73	PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis...	[more]
gi\|659131250\|ref\|XP_008465588.1\|	9.5e-13	31.55	PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo]	[more]
gi\|700196231\|gb\|KGN51408.1\|	3.1e-11	57.63	hypothetical protein Csa_5G528450 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007530.1	Lsi06G007530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..179 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007530	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007530	Melon (DHL92) v3.6.1	lsimedB432
Lsi06G007530	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007530	Silver-seed gourd	carlsiB251
Lsi06G007530	Silver-seed gourd	carlsiB830
Lsi06G007530	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007530	Watermelon (97103) v2	lsiwmbB362
Lsi06G007530	Wax gourd	lsiwgoB521
Lsi06G007530	Wax gourd	lsiwgoB531
Lsi06G007530	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007530	Cucurbita maxima (Rimu)	cmalsiB078
Lsi06G007530	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007530	Cucurbita moschata (Rifu)	cmolsiB064
Lsi06G007530	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007530	Cucurbita pepo (Zucchini)	cpelsiB304
Lsi06G007530	Cucurbita pepo (Zucchini)	cpelsiB559
Lsi06G007530	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007530	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007530	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007530	Melon (DHL92) v3.5.1	lsimeB410
Lsi06G007530	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007530	Watermelon (97103) v1	lsiwmB391
Lsi06G007530	Watermelon (97103) v1	lsiwmB398