Lsi06G007440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G007440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionATP synthase subunit alpha, chloroplastic
Locationchr06 : 13440963 .. 13442018 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTGTTGTAGGCATTCGAGGAAAGTGGTTGAAGAGGTTAAAAGAGAGAGAGGGCAGAGATTCTGATGGTCTATTGACGTGTTGTAGGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGGTGCATTGAGTATATTGATTAAATTGATTTTTGCTTCCATTTTTACGCAATAGAATGATTTTATTTAAATCGAAACTATTTTGAATTGGTAATGCTATTGTATTTATGGATGTTTGACTGCATTCATTGAGATTATAATCAATATGATTAGGAAATGAAGAGATGGTAATATTCTAATGTCGAATGAATTGTAAACGTACTTGGAAATGTGCATAGCTACCTCTGAATCTTGAAATTCGTATACCGACTTTGAAAATGAAGTTCATTGAGTTCATAAGATAGCAAACTTTGATTGAAATTATTGCAAACGTACTTAACTTCATATGATCTATTTTATGGGTTGATGTAGGTCATGTTTGTTGGAATAATTGGTATGTGACCATTCGTGTAGAGTTATATTGTCTTGTGAATGAACATGTTTTTTCATTCCAAATTGAAGAAAAGACATGATTATTCCAATGGTCACGAATTAGTCTATAAATATGTCTCTTCTTCTGAGTAGCTTTATCGAGATTAGGAGCGAATTGCACAAAGGCTTCTAATTTGGCAAATTGAGCCAATTCCAATTTTGATTTGTTGGCTACTTGTTTCATGGCTTTAATTTAAGCTGTAGATCCTACCCTGGAGATGGAAATACCCACATTAATAGCAGGTTTGATTCTAGAATTAAATAGATCGGCAAATAAGAAATGTGTCCATTGGTAATGGAAATTACATTAGTAGGAATATAAACTGAAACATATATTTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

mRNA sequence

ATGACGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

Coding sequence (CDS)

ATGACGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

Protein sequence

MTCWRNGVDGGTLLYSPMEIVAPEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
Homology
[Close]
BLAST of Lsi06G007440 vs. Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-16
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. Swiss-Prot
Match: ATPA_MORIN (ATP synthase subunit alpha, chloroplastic OS=Morus indica GN=atpA PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-16
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTKEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.6e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 5.6e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.6e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TrEMBL
Match: X2F439_LAGSI (ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TrEMBL
Match: X2F6V2_LAGSI (ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TrEMBL
Match: T1QME8_EUCDE (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus deglupta GN=atpA PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.6e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK+SIQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKESIQE 496

[Close]
BLAST of Lsi06G007440 vs. TrEMBL
Match: T1QK86_EUCML (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus melliodora GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TrEMBL
Match: A0A0A0RS51_9GENT (ATP synthase subunit alpha OS=Echites umbellatus GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha)

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-15
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLV+LRTY+KTNKPQFQEII+STKT T EAE+ LK+ IQE
Sbjct: 450 EIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: gi|595645223|gb|AHM88686.1| (ATP synthase CF1 alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: gi|595647140|gb|AHM90571.1| (ATP synthase CF1 alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: gi|545718036|ref|YP_008576883.1| (ATP synthase CF1 alpha subunit (chloroplast) [Eucalyptus deglupta])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK+SIQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKESIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: gi|108802628|ref|YP_636284.1| (ATP synthase CF1 alpha subunit (chloroplast) [Eucalyptus globulus subsp. globulus])

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: gi|657302845|ref|YP_009041072.1| (ATP synthase CF1 alpha subunit [Rhazya stricta])

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

The following BLAST results are available for this feature:
BLAST of Lsi06G007440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPA_EUCGG1.9e-1693.62ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
ATPA_MORIN4.3e-1691.49ATP synthase subunit alpha, chloroplastic OS=Morus indica GN=atpA PE=3 SV=1[more]
ATPA_NICSY5.6e-1689.36ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 S... [more]
ATPA_TOBAC5.6e-1689.36ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2[more]
ATPA_ATRBE5.6e-1689.36ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1[more]
BLAST of Lsi06G007440 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F439_LAGSI4.3e-1595.74ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria GN=atpA PE=3 SV... [more]
X2F6V2_LAGSI4.3e-1595.74ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria GN=atpA PE=3 SV... [more]
T1QME8_EUCDE9.6e-1595.74ATP synthase subunit alpha, chloroplastic OS=Eucalyptus deglupta GN=atpA PE=3 SV... [more]
T1QK86_EUCML2.1e-1493.62ATP synthase subunit alpha, chloroplastic OS=Eucalyptus melliodora GN=atpA PE=3 ... [more]
A0A0A0RS51_9GENT2.1e-1493.62ATP synthase subunit alpha OS=Echites umbellatus GN=atpA PE=3 SV=1[more]
BLAST of Lsi06G007440 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00120.18.6e-1580.85ATCG00120.1 ATP synthase subunit alpha[more]
BLAST of Lsi06G007440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595645223|gb|AHM88686.1|6.2e-1595.74ATP synthase CF1 alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|595647140|gb|AHM90571.1|6.2e-1595.74ATP synthase CF1 alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|545718036|ref|YP_008576883.1|1.4e-1495.74ATP synthase CF1 alpha subunit (chloroplast) [Eucalyptus deglupta][more]
gi|108802628|ref|YP_636284.1|3.1e-1493.62ATP synthase CF1 alpha subunit (chloroplast) [Eucalyptus globulus subsp. globulu... [more]
gi|657302845|ref|YP_009041072.1|3.1e-1493.62ATP synthase CF1 alpha subunit [Rhazya stricta][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0033178proton-transporting two-sector ATPase complex, catalytic domain
Vocabulary: Molecular Function
TermDefinition
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Vocabulary: INTERPRO
TermDefinition
IPR000793ATP_synth_asu_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007440.1Lsi06G007440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000793ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminalunknownSSF47917C-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 24..69
score: 4.7
NoneNo IPR availableGENE3DG3DSA:1.20.150.20coord: 24..70
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G007440Silver-seed gourdcarlsiB830
Lsi06G007440Cucumber (Chinese Long) v3cuclsiB068
Lsi06G007440Cucumber (Chinese Long) v3cuclsiB090
Lsi06G007440Watermelon (97103) v2lsiwmbB362
Lsi06G007440Wax gourdlsiwgoB521
Lsi06G007440Cucumber (Gy14) v1cgylsiB640
Lsi06G007440Cucurbita maxima (Rimu)cmalsiB128
Lsi06G007440Cucurbita moschata (Rifu)cmolsiB118
Lsi06G007440Wild cucumber (PI 183967)cpilsiB059
Lsi06G007440Wild cucumber (PI 183967)cpilsiB080
Lsi06G007440Cucumber (Chinese Long) v2culsiB058
Lsi06G007440Cucumber (Chinese Long) v2culsiB082
Lsi06G007440Melon (DHL92) v3.5.1lsimeB398
Lsi06G007440Watermelon (Charleston Gray)lsiwcgB361
Lsi06G007440Watermelon (97103) v1lsiwmB391
Lsi06G007440Watermelon (97103) v1lsiwmB398
Lsi06G007440Cucumber (Gy14) v2cgyblsiB055
Lsi06G007440Cucumber (Gy14) v2cgyblsiB076
Lsi06G007440Melon (DHL92) v3.6.1lsimedB420