Lsi06G007430 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G007430
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptioncobalt ion binding
Locationchr06 : 13440671 .. 13441081 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCACCGTCAACTCCATTCCTCCAGCACCTACAACACGTCAATAGACCATCAGAATCTCTGCCCTCTCTCTCTTTTAACCTCTTCAACCACTTTCCTCGAATGCCTACAACACGTCATTGACTCATCTTCTTCTTCCTTCTTACTTCCATCTTTTATTTCTTCTCGTCTGTGATTCACTTTTCCTCTACTTAACAGACAAGATTATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTTGGGATTCGAATACTCTCCACTCAACGATGCTTCTCCTAATTGGAGCAATAGACCTCCAAAAGAGACAACACTCCTCAATGGTTGCGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGACCCTAAAACCATCGGAGAAGAAGGATTCTAA

mRNA sequence

TGCCACCGTCAACTCCATTCCTCCAGCACCTACAACACGTCAATAGACCATCAGAATCTCTGCCCTCTCTCTCTTTTAACCTCTTCAACCACTTTCCTCGAATGCCTACAACACGTCATTGACTCATCTTCTTCTTCCTTCTTACTTCCATCTTTTATTTCTTCTCGTCTACAAGATTATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTTGGGATTCGAATACTCTCCACTCAACGATGCTTCTCCTAATTGGAGCAATAGACCTCCAAAAGAGACAACACTCCTCAATGGTTGCGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGACCCTAAAACCATCGGAGAAGAAGGATTCTAA

Coding sequence (CDS)

TGCCACCGTCAACTCCATTCCTCCAGCACCTACAACACGTCAATAGACCATCAGAATCTCTGCCCTCTCTCTCTTTTAACCTCTTCAACCACTTTCCTCGAATGCCTACAACACGTCATTGACTCATCTTCTTCTTCCTTCTTACTTCCATCTTTTATTTCTTCTCGTCTACAAGATTATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTTGGGATTCGAATACTCTCCACTCAACGATGCTTCTCCTAATTGGAGCAATAGACCTCCAAAAGAGACAACACTCCTCAATGGTTGCGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGACCCTAAAACCATCGGAGAAGAAGGATTCTAA

Protein sequence

CHRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEEGF
Homology
[Close]
BLAST of Lsi06G007430 vs. Swiss-Prot
Match: MORF3_ARATH (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana GN=MORF3 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-17
Identity = 57/124 (45.97%), Postives = 70/124 (56.45%), Query Frame = 1 

Query: 2   HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQ 61
           ++ L SS++Y++S           L+S + F   L   + SS +S L P +IS+R     
Sbjct: 15  NKTLSSSTSYSSSFP--------TLSSRSRFAMPLIEKVSSSRTS-LGPCYISTRP---- 74

Query: 62  IIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKT 121
                       K  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEF  DPK 
Sbjct: 75  ------------KTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKP 112

Query: 122 IGEE 126
             EE
Sbjct: 135 TEEE 112

[Close]
BLAST of Lsi06G007430 vs. Swiss-Prot
Match: MORF8_ARATH (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MORF8 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-12
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 81  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE 125
           S LND +PNWSNRPPKET LL+GCD+EHWL+V+E P    T  E
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRDE 115

[Close]
BLAST of Lsi06G007430 vs. Swiss-Prot
Match: MORF6_ARATH (Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana GN=MORF6 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07
Identity = 38/104 (36.54%), Postives = 49/104 (47.12%), Query Frame = 1 

Query: 27  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRF 86
           T S +   C+     S+S++   PS + S L   +  P  F+             +  R 
Sbjct: 4   TLSRSTASCVAKRFFSTSNAVASPSPLPSHLISRRFSPTIFHAVGYIPALTRFTTIRTRM 63

Query: 87  KALGFEYSPLNDASPNWSNRPPKETT-LLNGCDYEHWLIVMEFP 117
              G  YSPL   S N+S+RPP E   L  GCDYEHWLIVME P
Sbjct: 64  DRSGGSYSPLKSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMEKP 106

[Close]
BLAST of Lsi06G007430 vs. Swiss-Prot
Match: MORF2_ARATH (Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana GN=MORF2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 

Query: 77  GFEYSPLNDASPNWSNRPPKETT-LLNGCDYEHWLIVMEFP 117
           G  YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P
Sbjct: 55  GSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKP 94

[Close]
BLAST of Lsi06G007430 vs. Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 42/111 (37.84%), Postives = 55/111 (49.55%), Query Frame = 1 

Query: 19  NLCPLSLLTSSTTFLECLQHVIDSSSSSFL---LPSFISSRLQDYQIIPNSFNLPIRFKA 78
           +L P +L  +S T    L  ++ +SS SFL    P  I SR   Y  +          +A
Sbjct: 7   SLLPKTLTPNSKTLAPLLS-ILSTSSLSFLPCTRPHPIKSRSAAYPTV----------RA 66

Query: 79  L-GFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           L   EYS   + + N S    +ET +L GCDY HWLIVMEFP DP    E+
Sbjct: 67  LTDGEYSSRRNNNNNNSGEE-RETIMLPGCDYNHWLIVMEFPKDPAPTREQ 105

[Close]
BLAST of Lsi06G007430 vs. TrEMBL
Match: A0A0A0KCH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318670 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.1e-28
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 42  SSSSSFLLPSF-ISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSN 101
           SSSSSFLLPS  ISSRL+          QIIP SFNLPIRFKA G  YSPLND SPNWSN
Sbjct: 23  SSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLPIRFKASGSGYSPLNDPSPNWSN 82

Query: 102 RPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           RPPKET LL+GCDYEHWLIV+EFPNDPK   EE
Sbjct: 83  RPPKETILLDGCDYEHWLIVLEFPNDPKPSEEE 115

[Close]
BLAST of Lsi06G007430 vs. TrEMBL
Match: A0A067JVD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18922 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 58/96 (60.42%), Postives = 64/96 (66.67%), Query Frame = 1 

Query: 36  LQHVIDSSSSSFLLPS---FISSRLQ---DYQIIPNSFNLPIRFKALGFEYSPLNDASPN 95
           L   + SSSSS  L S   F+ S L      Q +P+S  +P RFK  G  YSPLND SPN
Sbjct: 14  LTRTLASSSSSSSLSSRSRFVFSLLDKNPSNQFVPDSVKIPTRFKTSGSGYSPLNDPSPN 73

Query: 96  WSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           WSNRPPKET LL+GCDYEHWLIVMEFP DPK   EE
Sbjct: 74  WSNRPPKETILLDGCDYEHWLIVMEFPTDPKPTEEE 109

[Close]
BLAST of Lsi06G007430 vs. TrEMBL
Match: A0A0A0KF23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318660 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 60/92 (65.22%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 42  SSSSSFLLPSFISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNR 101
           SSSSSFLLPS ISSRL+          QI PNSFNLPIR KA   E S LND SPN S R
Sbjct: 23  SSSSSFLLPSPISSRLRFAFPLLNRQVQITPNSFNLPIRCKASESESSLLNDPSPNSSKR 82

Query: 102 PPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           PPK++   +GCDYEHWLIV+EFPNDPK   EE
Sbjct: 83  PPKDSIPYDGCDYEHWLIVLEFPNDPKPSEEE 114

[Close]
BLAST of Lsi06G007430 vs. TrEMBL
Match: W9SDC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005246 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 57/103 (55.34%), Postives = 63/103 (61.17%), Query Frame = 1 

Query: 31  TFLECLQHVIDSSSSSFLLPSFISSRL--------QDYQIIPNSFNLPIRFKALGFEYSP 90
           T    L   + SSSSS    S  SSR         Q  Q++P     P+RFK  G  YSP
Sbjct: 9   TIASTLSRTLFSSSSS---TSVSSSRFRFALAVFNQQQQLVPEPVKAPVRFKNSGSGYSP 68

Query: 91  LNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           LND SPNWSNRPPKET LL+GCDYEHWLIVMEFP +PK   EE
Sbjct: 69  LNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPVNPKPSEEE 108

[Close]
BLAST of Lsi06G007430 vs. TrEMBL
Match: A0A103XJ77_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006272 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 1 

Query: 23  LSLLTSSTTFLECLQHVIDSSSSS------FLLPSFISSRLQDYQIIPNSFNLPIRFKAL 82
           +++ T+  T       ++ SSSSS      F LP  +    Q  Q+ P    +P+R K  
Sbjct: 1   MAIFTTRRTLNSLFSRLLSSSSSSISSRSRFALP-LLDHHYQSPQLAPR---IPVRLKTS 60

Query: 83  GFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEFP DPK   +E
Sbjct: 61  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPTDPKPSEDE 105

[Close]
BLAST of Lsi06G007430 vs. TAIR10
Match: AT3G06790.1 (AT3G06790.1 plastid developmental protein DAG, putative)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-18
Identity = 57/124 (45.97%), Postives = 70/124 (56.45%), Query Frame = 1 

Query: 2   HRQLHSSSTYNTSIDHQNLCPLSLLTSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQ 61
           ++ L SS++Y++S           L+S + F   L   + SS +S L P +IS+R     
Sbjct: 15  NKTLSSSTSYSSSFP--------TLSSRSRFAMPLIEKVSSSRTS-LGPCYISTRP---- 74

Query: 62  IIPNSFNLPIRFKALGFEYSPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKT 121
                       K  G  YSPLND SPNWSNRPPKET LL+GCDYEHWLIVMEF  DPK 
Sbjct: 75  ------------KTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKP 112

Query: 122 IGEE 126
             EE
Sbjct: 135 TEEE 112

[Close]
BLAST of Lsi06G007430 vs. TAIR10
Match: AT3G15000.1 (AT3G15000.1 cobalt ion binding)

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-13
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 81  SPLNDASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGE 125
           S LND +PNWSNRPPKET LL+GCD+EHWL+V+E P    T  E
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRDE 115

[Close]
BLAST of Lsi06G007430 vs. TAIR10
Match: AT2G35240.1 (AT2G35240.1 plastid developmental protein DAG, putative)

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-08
Identity = 38/104 (36.54%), Postives = 49/104 (47.12%), Query Frame = 1 

Query: 27  TSSTTFLECLQHVIDSSSSSFLLPSFISSRLQDYQIIPNSFN-------------LPIRF 86
           T S +   C+     S+S++   PS + S L   +  P  F+             +  R 
Sbjct: 4   TLSRSTASCVAKRFFSTSNAVASPSPLPSHLISRRFSPTIFHAVGYIPALTRFTTIRTRM 63

Query: 87  KALGFEYSPLNDASPNWSNRPPKETT-LLNGCDYEHWLIVMEFP 117
              G  YSPL   S N+S+RPP E   L  GCDYEHWLIVME P
Sbjct: 64  DRSGGSYSPLKSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMEKP 106

[Close]
BLAST of Lsi06G007430 vs. TAIR10
Match: AT2G33430.1 (AT2G33430.1 differentiation and greening-like 1)

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-08
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 

Query: 77  GFEYSPLNDASPNWSNRPPKETT-LLNGCDYEHWLIVMEFP 117
           G  YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P
Sbjct: 55  GSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKP 94

[Close]
BLAST of Lsi06G007430 vs. TAIR10
Match: AT1G11430.1 (AT1G11430.1 plastid developmental protein DAG, putative)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1 

Query: 86  ASPNWSNRPPKETTLLNGCDYEHWLIVMEFPNDP 120
           +S   ++   +ET +L GCDY HWLIVMEFP DP
Sbjct: 67  SSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDP 100

[Close]
BLAST of Lsi06G007430 vs. NCBI nr
Match: gi|778714733|ref|XP_004150496.2| (PREDICTED: DAG protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 42  SSSSSFLLPSF-ISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSN 101
           SSSSSFLLPS  ISSRL+          QIIP SFNLPIRFKA G  YSPLND SPNWSN
Sbjct: 23  SSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLPIRFKASGSGYSPLNDPSPNWSN 82

Query: 102 RPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           RPPKET LL+GCDYEHWLIV+EFPNDPK   EE
Sbjct: 83  RPPKETILLDGCDYEHWLIVLEFPNDPKPSEEE 115

[Close]
BLAST of Lsi06G007430 vs. NCBI nr
Match: gi|778714737|ref|XP_011657287.1| (PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 42  SSSSSFLLPSF-ISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSN 101
           SSSSSFLLPS  ISSRL+          QIIP SFNLPIRFKA G  YSPLND SPNWSN
Sbjct: 23  SSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLPIRFKASGSGYSPLNDPSPNWSN 82

Query: 102 RPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           RPPKET LL+GCDYEHWLIV+EFPNDPK   EE
Sbjct: 83  RPPKETILLDGCDYEHWLIVLEFPNDPKPSEEE 115

[Close]
BLAST of Lsi06G007430 vs. NCBI nr
Match: gi|659117069|ref|XP_008458407.1| (PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-26
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 42  SSSSSFLLPSFISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNR 101
           SSSSSFLL S ISSRL+          QIIP SFNLPIRFKA G  YSPLND SPNWSNR
Sbjct: 23  SSSSSFLLSSPISSRLRFAFPLLNRQDQIIPTSFNLPIRFKASGSGYSPLNDPSPNWSNR 82

Query: 102 PPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           PPKET LL+GCDYEHWLIV+EFP DPK   EE
Sbjct: 83  PPKETILLDGCDYEHWLIVLEFP-DPKPSEEE 113

[Close]
BLAST of Lsi06G007430 vs. NCBI nr
Match: gi|659117072|ref|XP_008458408.1| (PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 62/92 (67.39%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 42  SSSSSFLLPSFISSRLQ--------DYQIIPNSFNLPIRFKALGFEYSPLNDASPNWSNR 101
           SSSSS LLPS ISSRL+          QIIPNSFNLPIR KA   E SPLND SPN S R
Sbjct: 23  SSSSSLLLPSPISSRLRFAFPLLNRQVQIIPNSFNLPIRCKASESESSPLNDPSPNSSKR 82

Query: 102 PPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           PPKE+   +GCDYEHWLIV+EFPNDPK   EE
Sbjct: 83  PPKESIPYDGCDYEHWLIVLEFPNDPKPSEEE 114

[Close]
BLAST of Lsi06G007430 vs. NCBI nr
Match: gi|802701996|ref|XP_012083987.1| (PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas])

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-22
Identity = 58/96 (60.42%), Postives = 64/96 (66.67%), Query Frame = 1 

Query: 36  LQHVIDSSSSSFLLPS---FISSRLQ---DYQIIPNSFNLPIRFKALGFEYSPLNDASPN 95
           L   + SSSSS  L S   F+ S L      Q +P+S  +P RFK  G  YSPLND SPN
Sbjct: 14  LTRTLASSSSSSSLSSRSRFVFSLLDKNPSNQFVPDSVKIPTRFKTSGSGYSPLNDPSPN 73

Query: 96  WSNRPPKETTLLNGCDYEHWLIVMEFPNDPKTIGEE 126
           WSNRPPKET LL+GCDYEHWLIVMEFP DPK   EE
Sbjct: 74  WSNRPPKETILLDGCDYEHWLIVMEFPTDPKPTEEE 109

The following BLAST results are available for this feature:
BLAST of Lsi06G007430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MORF3_ARATH4.1e-1745.97Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ... [more]
MORF8_ARATH8.9e-1265.91Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido... [more]
MORF6_ARATH8.6e-0736.54Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana ... [more]
MORF2_ARATH1.5e-0663.41Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana ... [more]
DAG_ANTMA1.9e-0637.84DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1[more]
BLAST of Lsi06G007430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCH1_CUCSA8.1e-2874.19Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318670 PE=4 SV=1[more]
A0A067JVD0_JATCU2.3e-2260.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18922 PE=4 SV=1[more]
A0A0A0KF23_CUCSA5.1e-2265.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318660 PE=4 SV=1[more]
W9SDC1_9ROSA7.3e-2155.34Uncharacterized protein OS=Morus notabilis GN=L484_005246 PE=4 SV=1[more]
A0A103XJ77_CYNCS2.1e-2050.46Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006272 PE=4 ... [more]
BLAST of Lsi06G007430 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06790.12.3e-1845.97 plastid developmental protein DAG, putative[more]
AT3G15000.15.0e-1365.91 cobalt ion binding[more]
AT2G35240.14.9e-0836.54 plastid developmental protein DAG, putative[more]
AT2G33430.18.3e-0863.41 differentiation and greening-like 1[more]
AT1G11430.11.6e-0655.88 plastid developmental protein DAG, putative[more]
BLAST of Lsi06G007430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778714733|ref|XP_004150496.2|1.2e-2774.19PREDICTED: DAG protein, chloroplastic isoform X1 [Cucumis sativus][more]
gi|778714737|ref|XP_011657287.1|1.2e-2774.19PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X2 [Cucumis ... [more]
gi|659117069|ref|XP_008458407.1|2.9e-2672.83PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis melo][more]
gi|659117072|ref|XP_008458408.1|3.0e-2367.39PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis melo][more]
gi|802701996|ref|XP_012083987.1|3.3e-2260.42PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900864 mitochondrial RNA modification
cellular_component GO:0005739 mitochondrion
molecular_function GO:0050897 cobalt ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007430.1Lsi06G007430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31346FAMILY NOT NAMEDcoord: 42..125
score: 1.5
NoneNo IPR availablePANTHERPTHR31346:SF1MULTIPLE ORGANELLAR RNA EDITING FACTOR 3coord: 42..125
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G007430Wax gourdlsiwgoB521
Lsi06G007430Cucumber (Gy14) v1cgylsiB640
Lsi06G007430Cucurbita maxima (Rimu)cmalsiB128
Lsi06G007430Cucurbita moschata (Rifu)cmolsiB118
Lsi06G007430Wild cucumber (PI 183967)cpilsiB059
Lsi06G007430Wild cucumber (PI 183967)cpilsiB080
Lsi06G007430Cucumber (Chinese Long) v2culsiB058
Lsi06G007430Cucumber (Chinese Long) v2culsiB082
Lsi06G007430Melon (DHL92) v3.5.1lsimeB398
Lsi06G007430Watermelon (Charleston Gray)lsiwcgB361
Lsi06G007430Watermelon (97103) v1lsiwmB391
Lsi06G007430Watermelon (97103) v1lsiwmB398
Lsi06G007430Cucumber (Gy14) v2cgyblsiB055
Lsi06G007430Cucumber (Gy14) v2cgyblsiB076
Lsi06G007430Melon (DHL92) v3.6.1lsimedB420
Lsi06G007430Silver-seed gourdcarlsiB830
Lsi06G007430Cucumber (Chinese Long) v3cuclsiB068
Lsi06G007430Cucumber (Chinese Long) v3cuclsiB090
Lsi06G007430Watermelon (97103) v2lsiwmbB362