Lsi06G007320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-directed DNA polymerase, putative
Location	chr06 : 12525987 .. 12539889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAGTCGGTTATGCTTCCAACATGTGTTCCTTCACCCTGATAGGAAGATGTGGACTTAAGCAAAACTAACTCATCTGATGATTAACGGGTCATGTAGTAAGTAGAGTTAGAGTCGCATCGAACATCAACCATTAACATAAACGTAAGATTGGACTAGAGGGGTGCAGCCATACATACCCTGCTAGCCTTGGAAACATAACTTATACCCAAATAAAATTTGATCTTAACATAGTCATGAACATACATAATGCATGGGGTCTCTTATAAAGAAACGTGTTTTAATCATGTAATGCAACATATCAATAATAACATAATAATGCAACATAACAAAGACAAACTACCATAAACTACTTAAAGAGAGGTGAGATAAGCTACTTATCTGTTTGGTTGCTTCTATCTTTTTCCTATGCTTGTCTTGTAATGATTTGAAAAGGTTGTAATAAAAAGTTTATGGAAGAAAAGTTGGGAGATCTTTTAGGAGGGCTTATGGGTGAGAGATTTGGGTGGTTCTTTCCAACCTTTTGTTACAAATGAGCCCCCATGGGGTATTTATAGCCCTCCACCTCCTTAATGAATGGCGAGGTTTGATTTGATCCAATAGTTAGAATCTTTCCTCTAGATTATTCTATATGTTTCTATACATTTCCATACCTCTCTATACATTTCTAGATTTCTCTATACAATGCTAGTTTTGTCTTAACTTTTTAGATTATGCTAGAGCTCTTCCTAGACTTCTATAGAATTCTCTAGAAACATCTAGGATATTCATACATCTTCTAGAACTTTCTAGAGACATCTAGGGTATTCATGCATGTTCTAGAACTCTTTAGATCTTTCTAGCACTTTTTAGAATTTTCTGGAAACTTCTAGATCTCTTGCAAATTTTGATGGTCCTTAGCATTATGGTGCTCTCGGTTTGGATCATCTCCTCTTGGGCATGTAGTATGGAGTTGGGTCGATCTTTAAGAAATTTTTTTAATTACTAAATTAATATTTTGTTTGCTACTTTTTTAATAGTCAAGGTTATTTATGGACCAATTTTTTAACCTTAAGGTATTAAATTTAGCATTGGTCTTCTCTATCTAGTCTTAGAAAATTAAAGTAAAATTAAAATTCAACTTGTAATTTTCTATAATATTTATGTACAAACTTGGGTTGTTACAAATCTTCCCCCCTTAAGAACTTTGGTCCTCGAAAGTTTATTGGTTCCTAAATAGATTAGGGTATTTGGCTCTCATTTCGTCCTCACACTCCCATGTAGCTTCTTCCACTCGTTGATTCCTCCAAAGAACCTTTACTAAATTTATTTCCCAATTACGAAGTTACTTCTTCTCTCTTGCCAAGATACAAATTGGAGTCTCTTTGTATTCCAAGTTTTCACATGTGATGGGTCGGGCACAAATTTTTGAAGCATAGATACATGAAAGACATTGTGTACTGTAAAGAGGGTTGGTGGTAACGTCAATCGATAAGCTAATTGACCAAACCGATTTTTTGAACATGCTAGTGCCATCTATTTTTTTCTTTTCAAAATTGACTTTTACGATAACATAGCTATCTATTTAGTAGACTAGAGTCTAACATGTGGCTTACTCCAAACATAAGCGAATATACATGCATAAACATGATATATGAGGAAATAAATTTATTACTAACGAGCCACGACAATTGCGCCGATGATCCAGTATTTCAAATAGTCCAATGAAGCAAGGGTTAAGTTTGCTTTTGCGTCCAAAAGGCATTATGCCTTTCATTGGTGCTACTTTTAGAAATATGTGATCTCCTACTTTGAATTACATCTCCTTTCGACAATTATCTGCATGACTCTTTTGTTTGCTTTGGGTCGTTCTCATTCTTTCACGAATTATCTTAATTGCTTCTGTTGTTTGTTGCACCAGCTCAGATCCAAGTAGTGTTTGTTCCCCTACTTCATCCTAGTGTGCAGGGGATCTGCACTTCTTTCCATACAGGGCTTCAAAGGGAGCCACAATTATAGCATGGTAACTGTTATTATAAACAAACTCTATAAGGTGCAGATGCGAATCTCTTGCTCCAGTAAAATCTAAAGCGCATACCATTAACATGTCTTCTAAGATCTGAATAATTCGTTCTGTCTGGCCATCGGTTTGTGGATGGAAAGCTGTGCTAAAATTTAGTTGTGTGCCCATTGCTTTCTTCAAACTCTTCCATAATTTGGAGACATAACAAGTGTCTCGATCTGAAACAATTGATAGCGAGACTCCATGCAACCCGATGATCTCTTTCAAGTGCATTTGAGCTGATGCTTTCGTAGTATGGGTGGTCTTGCAGGGTAGGAAATGGGGCCAACTTAGTGAGTCGATCCACAATTACCCAGATCATGTTGTATCCCTTAATAGTTTGTGGGAGCCTGAGATAAAATCCATGGAAATATACTCCCATTTCCACTTTGGAACATTCAAAGGCTGAAGGAGTCCTTGTGGCCTTTGTTAGCTTTCACCTGTTGACAAACCAAACATGTACTTACATAGTCGGCTATGTCCTTTTTCATTTTACTCCACCAGTAATGTGCTCTTAAGTCTCGGTACATCTTGGTACTCCCAGGATGTATTGAAAAGCATGACTCGTGAGCTTTCTTCAGTAGTTCTTTCTTGATTCCTTCATCTTTTGGTATACATAGTCGTCCACGAAAGAATAATGCAGAATCCGAGGCTATAGAGAATTCACTAGTTTCTCCTTTCTCAAACTGCATCTGTTTGTTTAGGTATTCGTCTATTTGTTGTGCATCAATTATCTTTGTCCTTAAAGCAAGACTTGTAGTTAGTTGAGTTATTTGAGCTATAATTATTTTTTGTGTTAGTAAGATCTCGACCTTCTCTAGGTCATCCATTATATGTTTGGAGATGGTATTTAAAGCTACTGTTTGAGCTGACTTTCGGCTAAGACATGAGCCAGAACGTTAGCTTTTCCTAGATAATAGGGGATCTCACAATCGTAGTCTTTCACCAATTCTAGCCATCTTCATTGTCTCATATTTAGCTCTTTCTGAGTAAAGAAGTATTTTACAACTAAAGTTTAGCCTCTAAAACCTTATTCATATTGTTTATGAAATCTTGAGATTGTTTTTAGGAGCATAGTAAGCAAGTGGAGTTCGAACTACCATGGCGTATTCTTTATAAGGTAATACAACTACAAACTCTAAAGTCTTATTCATGTTGCCTAGTAGATCTTCCAATTATTTTAAGAGCATAGTAAGCAAGCAGAGTTCAAACTACCATGATGCATATTTTACAATGTAATATTTATAAGACATTTTGCTTAAAACTCTATTTTATTCTAAAGTGTTGAATTAGAAAAGTGTTAGAGTGCTATGACTATCATGCAGTTATGGTTGTAGCCACCTATTTTTGTCTTTTTATTTTATTTTTATTTATTTTTATTTTTATTTTTATTTTTATTTCATAGTATGCTACCTTGATTTAATGCTAAAAAATGATAAGTGAGTATTTAAGTAAAAAGCTTCTTTTATAATTAATCTTTAAAAAATTATTAGTAATAAAAATAATAAAAAAATAATAATAAAGTTTTGTTTAAGGTAAATATATATATATATGTATGGAGGGAAAGCATCTTGGAAAGATATTTTTTTTTAAAAAAATATGTATTAAATTTTTTAAATTTTTTTCTCATAACTCCATTTTATTTTTTCCTTGTAAAACGAGTTAATTGTTTTTTTCCTAAATTAAAAACGTTTTTATGACTATAAATTCTAGGTTTAATCTTTGAGTAGGGGAGGAGATTTGTTGATAAAAACAATCATAGAAGGGGGAAGAGAGATTTCTTGAGGAGAAACCCTAGGGGAGGAGATTTGTTAAAAAAAAACCATAGAAGGAGAAGAGAGATTTCTTGATAAAAAAAACCTAGAGAATTTTTTTTACACAACCATAAATCCTAGAGAAAATCCTAGAGAGAAAGATTAGTCATCAACCCAATCCTTCCAAAAAAGTCTGAAAATCCACAACACAGGAGAGTTCTAGCTTGTTGGAGGTTGCATTCGGTAGGGCATTCGTCCCAAGGATCCGCACCTCAGACAATGGGTGATTTCGTGTTATGGATTGAAACCTCAACCTTTTTCTTATCTCTTAGATCTAAAAAAGTAGAGAGAAAGAAAAAGTTATAAGGAAAAACTTATTTTATTGCTATTATTTCTTCTATCTTCCATTTATTTTTTTTATATTAATATCATGTAATATTTATCATTCTCTACCTTCACTAAGAACCACTATTACTATTTCTTCTTTTATTTTTATTATTTTTGTGTTCATCTTCTTCCTCTTCATAGCATTTTCGTTATTGTTGTTTTTTTTTTTAAAAAAGAAAGTAAAGTAGAAAAAAAGCAAGAGAAGAGAAAGAAAAAAAAACATTTGAAAGAGAAAGAAAAAAAAATCATCATTATTATTATTATTATTATTATTATTAATTAGTTTGAAAGAAAAGGAAAGAGATATAATGCATCATTTAACATTTCAAATATTATTATTATTAGGGGAGTTTTTAAAAATAGAAAAATAAGTGAAACTATTTACATAAAATAGCAAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCAGAATCTATCGGTGATAGAAATGATAGAAATCTATCACTGATAGATATTGATAGAAGTCTATCAATGTCTATCAGTATCTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATATGTGATAATTTTCCTTATTATTATTTATTTATTTATTATTTGTTATTTGTTATTTGGTATTTGTTATTTTCTTATTTAGTTTTATCATTTTATATATTCTTATTTAGTTTTTTTTATAATTTTATTTTGAGTATTGTACTTAATTATTTTACTTTTTAAGTATTATATGGTGATATTATTTTAATGTGTATTTATTATATTTATTATGTCATTATCCTTAATCTTTTATTTGCGTCCTTTTTAAAACTAAAAACCAACGATGAAATTTAGAAAATTTGGGAGTCCGATTTTCTAAAAATCTTGAGGTGAGGAGTCGTTTCTTTGGGAGTCCGAGATCGATCTCCAATATGTTTTTATTTAAATGTTAATATGTTTTCTATATTTATCTAATTCATTATTATGTTATGTTTTCGCTTGTGAAATGTTTATGTTAAATCTTATTCGATTTCTAATTGAAATTTATCTATTTTTTTATCCTTTTTATATTTCTTTTTTTTAAATCATTTAAAAATTTCTTACAATCTTTTGCGTTTCGTTTTAACCTTTAAAAATTAATCCATTATTTCATAAGATTTCCTAATCATTTTTTTTCTAATAACTTCTTTTCAAGACTGTTTTCTTTAAAAAAAATTCATACAATGGAATCTAAAAATATCTAGAAGTCTGTTTTTCAAGATTCTTAAGGTGAGGGATCATATATTTGGGAGTCCGAGATTTTGATCCTAAGAAAAGAATGAATTTAATTAATGTTTTAAAAAAATCCTTTTATAAAAAGGCTTATTCCTATGACAAATTTGAGAAATTGTAATATTTTCTCAATTTCTTGAAGTAAGGAATTTTTCCTTAATTCTAGTGTAGCCTAATTGACGGAATATATTCCACTTACTTTATGGGATCATTACTTCAAACATTGGAGTAATGAGGGTGAAATAAGACATTTATTTTAAAACTTTTTCTTTTTCAAGTGTTTTCTTTAAAGAATAGTTTTCAATTCAAGATTTAAATTTTGGCCACTGTTTTCTAAACGGGTGTTGTGGGGTGCGAACACCTTCCCTATACACAAATGACTCCAGAACTCAACTTTGGTTTTTTCGCACACCATTTTTTATTGATTTTTATTAAAAATTATTTACTTTATTTCGGTGTCCAATCACACCGTAAAAAAGATTGGTGGCTACTCCTTTTATTTTCTTTTTTAAATTAACCCTTTTTGAGGACGTTGGCTGCTCCGCGTCGTCTCGGACACGTGGCGACAACTTGGTGACTCCACTGGAGAGTAAAGTTCCACCTTGAGAGTTTGGCCATTTTTTTTCCTTTTATCTTGAATTGTTTTATTCTTTAATGTTGTTTTTAATTTATATCTTGAGTATTTTATTTTTGCACACACATTCGCAAACCTCCTACCCGGGCTTTACCTTATCGGATTATAAATGAGGATGGAGTAGTGTTGACCTTCGAAGAGCCTAGCTCTCGCGTAGGCACATGAAAAATTCTCCCTCGATTTGATCATAGAGCTACTTGTGAGTTTTGTGACCAAATTGGGGACCTTTTACCCTTTAGGATGTACATTTAACCTCACTTATTTTTGTTTATTTATTTATTTATTTTATTCTTTCACCTTATTAATTTTGTTATTTACACACACCATCACAAGCTCCCTACCCGAGCTATACCCATTAAGTTTAGATTTGAGAATGTAGTAGTGTTGGCCTTCGAGAAGCTTATGCTTCCATGCAGGCACACGAAAAGTTCTCGCTCAAATTTGGTTGTGTGGTCAAGTGTGATTATACACCATTTTTTGGGACCTGTGTCATTTAGGCTTTTAGCATAAACTTCACTAGTTTGCATGAACCTTTGCATCATGTGTTTGTTTCTTGCATCTTTCATTTACATATATGCTTGCATCTAGAATAATCTTTATTGTGATCTAATTCTAGGATGGTAGACACTCATGCACCTGGGGTATTTGCCCAAACCGTACCTAGTGAAGACTCGTGGGAAGGTATATCTCAATGGTCAGAACAATTTCATCAAGAGCTAGGTTTTGTTTGGCCCAGAAGATCAGAGATTCCATTTCCACAGACGTGTAAATTATAGTTTATCAATAACAACCTGGAAGATTTGAAATAGCTATGGGAAAGTTTGACATTGGAACACAGAGTGGAATTTGCCAGAACGTAGGGAAATATAGCAGATCTCATGTATGCAAGCATTAATATACATGCATTGCAAGCCTTGGCACACTTTTGGGACCCCATGTTGAAGTGTTTCACATTCAGCAAGTTTGACTTGACCCCCCCGCTATAGAAGAATATCAAGCCCTCATCAGCATACCACCTGGTATAGGAAGTAAAGTTTATGTCTATGACAAGAAATTGACTCTACAGAGGTCGATATCCAAGTTGTTAGGTGATGTTCATGCATCAAAGGTAAGGAAGCAGATGAAGACAAAATAGGGGAGAAATTGTATCCCCATCGATTATTTAATTCATCTTATACACTGACGTTTGCCGGAGAAGAAAGGTTTATCCCTCTTGGCGTTATGTATCTATGGTACAGTCATCTTTCCAATGATTAAGAGATATGTAGAAGATGAAGTTGTTAAACTTTTTGTTGGATTTGAAAGAGGTGTGAACCTCATCATTCCAATCATAGCAGAAGCTTTTAGATCATTGAGTTATTGGCACATTCAGGGTAAGGGAAAGTTCCTCAGTTGTGCCCCAATGCTTTTTATATGGATTTCCAGTCATCTAAAGTATCCAAACGAGTTTGGGTATCATCGTATAAAATTTAGTAGTCCATGGAACAACATAAGGAACACCATTAGAGATTTCAATGTTGCACTTTGGAATTCAAATATTCCAAGTTTTGAAGTTTGGATGCAATTCTTAGGTCATTTAACATTGGAGGAAGTAATCTGGAGAGCACCATGGGTACCCACGAGCTCTTTGATATACCATTATAGAAAATTTCCATTTATCCCATTATTAGGCATATGGGGAAGAATTGCTTACTCTCCTTTGTTGGTATTACGACAGTCATGGTCAAAGCACTTTGCACCAGTTGTTTATGGGTTAGAAGATTGGGATTTCTCGTACAAGTCTGACGTGACGAATGCCCAAGTACCTGAAGTGATAAAAGCATGAAAATTTGCCAAGAGAATGAAGAGCTTGAGACATTGTGAAGTGTAAACGAAACAGTATGATAGTTGGATGAAAATTAGGAAAGGACTGGAAAGTGCTATTACACCTGAGTTGACTGAGCCATACATGACATTGAAGATGGGACAGAAAAGTCAAGAAGAGGATTTGGAATGACTAAGAGAAAGGAATCACGTCCTAGCAGCAGAAAATGAAGAATTGAGAGAAGAGGTTAGGCGTTGGGTCCAACAAGCTACACGTGCTCAGAGACAACTGGAAGAAGTGAAGCGTGATATACAAAAGCAATCAGAATAAGAGAAAGACATAGATTCTTTGAATAATGAAGCAGTTCAGATGAGAAAGAAAAATAAGAGATTACTAAGAAACATTGTTGCCTTACACAACGAGGCAGATACTCAGAAAATTTGCATCAAAGAACTAAAACATGAATTGGAAAGGATGAATAAAGTCGCTACATAATTCTAGAATGCCTTGAACGAGCAAGCCATATCCTCTCAAAAGATCAATACATAATTTGAAGCTCTACAACACTCAACTAATGAATATAAATCTCAGCTTATAGAAGTAGAATGTCGCAATACATTTCTCCAGGAGGCTGTTGCAAGTTTTGAAGGCCAGTTGCTGATATATCGTAAGGCGCGAGAGGTCGCAACAGATGACTATACTCGGTTAAAGGAAGAGTATCAAGAAATGTCAACAGATTTTGCAGTATGGAGAGACGAATATGACATAGTGAGACACAAATATGATGACGCTAGAAATCAGATTGAACAAGGAGCTAAGAAATTAAGACAGATGGCGAAAATGGCAGATCAATTCTCAGCACAAGCAATGACTCTCCAGCAAGGCATCATACCTACACAGCACAACAGCAAAGAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCGTTTTGGGTGCTACCATTAGATTTTAGAGTCATAGTTTTCTAAGAGTATGTATTTCATTATCCTTACTTTTGTAGGATCTTGTATTAAGATCCTGAAGTTTGTCATTTAGCATTCATTTAATTTTAATGGAAATGCAAGTTTTTTTTGTTTCCTCTATTATTATTATTTATTTATTTATTTATTTATTTATTATTATTATTTCTTTAGTTAATTAATTTGTTATTTCCTTCTTCTGCATAAGAGACAAGAGATTTTAAGCTTACAAAATAGCTCGAGGTTCACCTCCTCGCCATCCTTACTGGACGAGAAGAAAGGCTAGAATAAATGATGAGCGAGCTAACGATCAAGTTCAGGCAGTCTGTCAGGACGTGGATGAGTTGAAAGAACAGTTAGCGAGGATCCTAGAATTACTCACTGTGGGGAAAGGAAAGAATGCTGTAGCAATTTCCTCACAAGTGGAAGCTGGTTTGAATCAGACATTAGATGATATGCCTGCATACCCTCTTAGTTTTACTCCCCATAGAGCATCTAGTCCACACTTGGTAGGTGTGACTTATCCTACTTCTTTTCCTGCACATGAGTCTAATCAAACAGTGCAGCAGACAGCTCGTGTCAATGATCCGATATACACCCCAATTATGGAAGGAGAAAAAAAGGTTTCAGAGAATCAGGGCAGCAAAAGAAGACTAGAGTTTCTTGAAGAAAGATTACGGGCAATTGAAGGTGTAGATATGTACGAGAATGTTGACACAACGCAGTTATGTTTGATTTCAGATGTGGTGATCCCTCCCAAATTTAAGACTCCTGATTTCGGAAAGTATAATGGAACCACATGCCCAAAAAGCCACCTAGTTATGTATTGTCGAAAGATGTCGGCTTATGCTCATGACGACAAGTTGTTGATTCACTGCTTTCAGGACAGTTTAGTTGGCATTGCCTCTCGTTGGTTCATGCATTTGGATGGTTCACAAGTGCACAAATGGAAAGATCTCGCAGATTCCTTCCTAAAGCTGTATAAATACAATATTGATATGAAACCAGATCATTTGGATCTTTAGAGAATGGAGAAGAAAAGTGTTGAAAGTTTTAAGGAGTATGCACAATGATGGAGAGAAATGGCTGCACAAGTGTCACACCCTCCCCCAATTCACCCTCTTATATCTGGGAAAAGAGCATGAGTTACATACATCCATCTATATACCATTCTCCTCATTATCATACACGCAAGTAGAGGTTATAATATCATATGCTAAATTTGTAAAACAAGACTTTTCTAATCCCCGCATTCCATTCTCTATTATATGTCAGTCAACACAAAAATCTAATATTTACAAATTAAGGGAGGATCTGGAGCAGAGACTTCGCGAGGGTAGGTCAAGCTCCTGGATACCGATCGCTACCTAGGGAATAAGGAAAACAATTTGAAGAAAATCGTTAGACATACGTCTAGTGAGTGACAAGACATTAAACATTCATACTAAAACATGCTTGTCTAAGCATAAATGAAATTATTTGTATAAAACTTCTCATAGGTATGTAGCTTAAAATCATGGTACATAAATACTTCTTCATCTCAAAACATAGTTTACCATTACTATTCAGCTGAAATCATAATTCGTGAATATCGTGCTCATCTGAACATAGCACTTTGAAATCCTTAGTTGAAGTGGAGCAAGCTCAACACTCTCAACGTCATAATTTCATTTACCGTCATGTGCACACTCAGGCTAACATATATATATATCTATATTTATATATGATTTACGGCTGTCCTGATACGTCACCGAAGTCCTCATATATCAGAGTTCCAGCTATCTCGATACCGTCTCAATGTCCTTAGGTATCGTCACATATTCATCTCGATATAGTCTCCATGTCCTTAGGTATCGTTACATTTTCATCTCGATACCGTCTCAATGTCCTTAGGTATCGTTGTATATATTTATCTCGATACCGTCTCAATGTCCTTAGGTATCGTTACATATGGTATTAATCATTTAACTAAACCATGTTCAATGGTCAAGATCTTATCAAACATATTTAAGAATCATGGAGCATAGAACACCTTGCAAATGATACGTACAAAGCTCATAAATCATACTTAGTCAACATTGAGCATTAAACATAGTTTTTGCATAATCTATTTATTTATAAGAAATAGAATTCATAAGACATGTAGTAACATTGCCACGGAATCTTGCTTTTAAGTAAACTCTGTTCCGTAACCATAAACATACTTTACTCAACTAACTTAGCTCATGAACTCATATCACATCATACTTAAATAAAACATTGCTCATTAACACATAAAGCATCATGCTTAATCCAAGAATTTATAAAACTTTGTTGAAAATGTTTTGCCACTCACGGTTTGTAGCCGACTAGCTCACAACGGCTTGTAGGCCTCTCCCAACTCTATTTGTCCTGAAAATAATAAGTTCCTCTAGATTAACTCTTGACATGCTCGCAGCCTTTGCCATAATCACTTACAATAACTAGATTCATGATATTCATAATATTCTTTAAAAAGAATTGTCTAAACATAGCTAGAACCACATCAACTTTAATTGATCATAACTTCCTCAATTCTTAACCAAATCAAATGAAACTTATGGCAAACTCTTCATTGTACACTCCTCTACAATTTATCTTCAGAGTGAAAGATCTAAAAGTGTGTAGTTTGTCCAGAATTGTCCTTAGATCAATAGCTACTCGAAAATTCAGATCTGCCTTGTTTCACAGTTTCCAGCATTTCAGCCACACTTCAAGAATTCATAACTCGCTCAATACTTAACAAAACGGAGTAAATTGTATATCAAACTCTTTGTTTCATAATCCTCTACAACTTACTTGGCGACAAGAAGGCTTAAAAATCGCTAGAATATTCAGAAACTACCTCGAATCAGAAGGTAACCTTCTTCCCGATTTCTGCAGCCTCTATCTGTTCCACCTGAAAATTAATCCATATCCACTCGTTTTTAGGTTCCTCAGCCTTCATAAACGTTGTTAGAAATTCAATTAACTAACTAACCTCACCAATTTCAGCTTCTATCTCCTCCTAAAAAGCTCAAACCGCTTCAAAAACCAGAGGTCTCTCTAGTTTCACAAGTTTTCCTATCTACTGTCTTTCCCCTGCACTTTCATCCACTTACAATCATTTTCAGCTCCGGCCACCTTCATACAAGTTGTAGATAAATATATTAACTTACTAACCTCAAAATTTTAGCTCCAAACGCGAACTCTACAGCTTGAAATCGTCAAAACACTACAAGTTACTCGGATTTCCTTCTGTTTCAGACAAAGGTGGAACTTTCTTCAATTCCAGCTACCTTTCCGGCCAAAATCCACCACAAAACCCTCAATCCTCTTCTAATTCTGCATGTATTCGGTGTCTCTCCCTTTCAAGAAGAAGAAGGAATGAAAAATAATGGGGTCCCGAGTCCTTCTTTTCCTTTTTCTACTCCCCACCGACTGTCGCTTCCTCTTTCCTTTTCTTTCTTTTTTTTTCTTCCACTAACTCAATTTCAATTCCCTTTTCTATTTTTCTTAATTGTTAAATTAAAACATAATAATAATAATAATAATAATAATAATAATAATAATTCTAACTTAACCATGGTTAACTTAGTCCACGATTATAACTTAAACGTCAACTAACCTTTAGGTGTTTCCAATTAACTCAAATTGATGAGCATTTTCTTTCTTCTTTTAGTATCTTAATATTACCTCTTGGCCTTTTCACTTGATCATAACAAATTGAAAGAGTAATAAAAAGTTTAGGGCTTACAACAAGTCCAACCTCCGTTGACAGACAAAGAATTGACAGCTATGTTCATAAATACTCTTTGGGCACCATACTATGATAGGATGATTGAGAGTGCTTCGACCAATTTTTCAGACATCATAACCATTGGAGAAGGAATCGAATTCGGAGTAAAGAATGGAAGGATTACTGATTTTGCTTCAGAGTCAAGAAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTGCACGAGTTGAGCTCGGCTCAAAGAGTAGCTGCACATGTGTCTTCACCAACTGCTGGGCAAGCAATTACTCTCCTAATCATCAGAATGTAAGTCAAAGTCCTTTTGGCCAGTCAAATCAGAGAAATGTAAGGAACGATTGGAAACAAACCCGTTTTGACCCCATACCCATATCATATACTGAACTCTTGCCTCAACTATTAAAGAATCATCAAGTGGCCATTATACCTCAAGAGCCTCTGCAACTGCCGTATCCTAAGTGGTACGACCCAAGTGCAAGATGTGAATATCATGCTGGGGCAGTTGGGCACTCTACTGAGAATTGTTTTCCTCTAAAAGCTAGGGTACAAAGTTTGGTCAAGGCTGGATGGCTAAAATTCAAGAAAACAGGAGAAGAGCTAGACGTTAACCGAAACCCTCTCCCAAATCATGAAGAGCCTGTTGTAGGTGCGGTTGATACATTGGTAGAATGTTGCAAAGATAAAGTTCATGACTTGACTACTCCAATGAGAGTTCTTTTTCAAATTCTTCATGAGGCTGGGTACCAATCGCCACTTGATAGTAATGGCAGAAATAAGATAGGATGCGCCATTGAAAAAGGGTGTTTATTCCACCCTGAGATGGATGACCATTCCATAGAAGATTGTATTGATTTTAAAAGGGAAGTACAGAAATTGATGGATGCAAAGATTTTAATGATAAGTCAAACAGACCCATAGGAAATCGAGGTTGATATGATTTCCAACACTTCATCTCACGAAAAAATCTCAAAACAAGGATCATCTATACGAGAACCATTAGTTATTTATTATGAAGAAAAATCTAGTGTCACCTCTTGTATCGAGATACCAAAGATAATAATCGTCGAGATACCAGGTCCCTTTGCTTATAAGGATAATCGAGCTGTACCATGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTAGAGGGATGACTCGTAGTGGAAGATGTTACACACCAGATAACTTAAGGAATATTCCGAAAGAGGATGAAGCTCGACAACACAAGGGTAAAGCTATGGAAATAACAAGTGGGGATGATTAG

mRNA sequence

ATGAGGATGGTAGACACTCATGCACCTGGGGTATTTGCCCAAACCGTACCTAGTGAAGACTCGTGGGAAGAATGTCGCAATACATTTCTCCAGGAGGCTGTTGCAAGTTTTGAAGGCCAGTTGCTGATATATCGTAAGGCGCGAGAGGTCGCAACAGATGACTATACTCGGTTAAAGGAAGAGTATCAAGAAATGTCAACAGATTTTGCAGTATGGAGAGACGAATATGACATAGTGAGACACAAATATGATGACGCTAGAAATCAGATTGAACAAGGAGCTAAGAAATTAAGACAGATGGCGAAAATGGCAGATCAATTCTCAGCACAAGCAATGACTCTCCAGCAAGGCATCATACCTACACAGCACAACAGCAAAGAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCACATCATAACCATTGGAGAAGGAATCGAATTCGGAGTAAAGAATGGAAGGATTACTGATTTTGCTTCAGAGTCAAGAAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTGCACGAGTTGAGCTCGGCTCAAAGAGTAGCTGCACATGTGTCTTCACCAACTGCTGGGCAAGCAATTACTCTCCTAATCATCAGAATTGTCACCTCTTGTATCGAGATACCAAAGATAATAATCGTCGAGATACCAGGTCCCTTTGCTTATAAGGATAATCGAGCTGTACCATGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTAGAGGGATGACTCGTAGTGGAAGATGTTACACACCAGATAACTTAAGGAATATTCCGAAAGAGGATGAAGCTCGACAACACAAGGGTAAAGCTATGGAAATAACAAGTGGGGATGATTAG

Coding sequence (CDS)

ATGAGGATGGTAGACACTCATGCACCTGGGGTATTTGCCCAAACCGTACCTAGTGAAGACTCGTGGGAAGAATGTCGCAATACATTTCTCCAGGAGGCTGTTGCAAGTTTTGAAGGCCAGTTGCTGATATATCGTAAGGCGCGAGAGGTCGCAACAGATGACTATACTCGGTTAAAGGAAGAGTATCAAGAAATGTCAACAGATTTTGCAGTATGGAGAGACGAATATGACATAGTGAGACACAAATATGATGACGCTAGAAATCAGATTGAACAAGGAGCTAAGAAATTAAGACAGATGGCGAAAATGGCAGATCAATTCTCAGCACAAGCAATGACTCTCCAGCAAGGCATCATACCTACACAGCACAACAGCAAAGAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCACATCATAACCATTGGAGAAGGAATCGAATTCGGAGTAAAGAATGGAAGGATTACTGATTTTGCTTCAGAGTCAAGAAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTGCACGAGTTGAGCTCGGCTCAAAGAGTAGCTGCACATGTGTCTTCACCAACTGCTGGGCAAGCAATTACTCTCCTAATCATCAGAATTGTCACCTCTTGTATCGAGATACCAAAGATAATAATCGTCGAGATACCAGGTCCCTTTGCTTATAAGGATAATCGAGCTGTACCATGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTAGAGGGATGACTCGTAGTGGAAGATGTTACACACCAGATAACTTAAGGAATATTCCGAAAGAGGATGAAGCTCGACAACACAAGGGTAAAGCTATGGAAATAACAAGTGGGGATGATTAG

Protein sequence

MRMVDTHAPGVFAQTVPSEDSWEECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKYDDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQGIIPTQHNSKELSRFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSSAQRVAAHVSSPTAGQAITLLIIRIVTSCIEIPKIIIVEIPGPFAYKDNRAVPWKYECQFITNNVSRGMTRSGRCYTPDNLRNIPKEDEARQHKGKAMEITSGDD

Homology

[Close]

BLAST of Lsi06G007320 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 31/90 (34.44%), Postives = 44/90 (48.89%), Query Frame = 1


Query: 218 IIVEIPGPFAYKDNRAVPWKYECQFITNNVSR----------------GMTRSGRCYTPD 277
           +++E+P PF YKDN+AVPW Y C    +   +                G+TRSGRCY+P+
Sbjct: 673 MVIEVPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGVGGITRSGRCYSPE 732

Query: 278 NLRNI------PKEDEARQHKGKAMEITSG 286
              N+       KE   R+ K +  E T G
Sbjct: 733 AFENLKNEKGGEKEQSPREEKVQPPESTDG 762

[Close]

BLAST of Lsi06G007320 vs. TrEMBL
Match: A0A061EDD9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017392 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 31/80 (38.75%), Postives = 40/80 (50.00%), Query Frame = 1


Query: 218 IIVEIPGPFAYKDNRAVPWKYECQFITNNVS----------------RGMTRSGRCYTPD 277
           +I+E+P PF YKDN+AVPW Y C    +                   RG+TRSGRCY+P+
Sbjct: 653 MIIEVPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGVRGITRSGRCYSPE 712

Query: 278 NLRNIPKEDEARQHKGKAME 282
              N+  E      KGK  E
Sbjct: 713 AFENLKNE------KGKEKE 726

[Close]

BLAST of Lsi06G007320 vs. TrEMBL
Match: A0A061F0F4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_022312 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1


Query: 218 IIVEIPGPFAYKDNRAVPWKYECQFITNNVSR----------------GMTRSGRCYTPD 277
           +I+E+P PF YKDN+AVPW Y C+   +   +                G+TRSGRCY+P+
Sbjct: 879 MIIEVPKPFPYKDNKAVPWNYNCKVQVSEAKKWIAESQDDAANITGVGGITRSGRCYSPE 938

Query: 278 NLRNIPKEDEARQHKGKAME 282
              N+  E      KGK  E
Sbjct: 939 AFENLKNE------KGKEKE 952

[Close]

BLAST of Lsi06G007320 vs. TrEMBL
Match: A0A061GRI1_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_038877 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 32/90 (35.56%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 218 IIVEIPGPFAYKDNRAVPWKYECQFITNNVSR----------------GMTRSGRCYTPD 277
           +I+E+P PF YKDN+AVPW Y C        +                G+TRSGRCY+P+
Sbjct: 243 MIIEVPKPFPYKDNKAVPWNYNCNVQVLEAKKWIAESQDDAANITGVGGITRSGRCYSPE 302

Query: 278 NLRNI------PKEDEARQHKGKAMEITSG 286
              N+       KE   R+ K +  E T G
Sbjct: 303 AFENLKNEKGEEKEQSPREKKVQPPESTDG 332

[Close]

BLAST of Lsi06G007320 vs. TrEMBL
Match: A0A061FU58_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042889 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 30/80 (37.50%), Postives = 40/80 (50.00%), Query Frame = 1


Query: 218 IIVEIPGPFAYKDNRAVPWKYECQFITNNVSR----------------GMTRSGRCYTPD 277
           +I+E+P PF YKDN+AVPW Y C    +   +                G+TRSGRCY+P+
Sbjct: 621 MIIEVPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGGGGITRSGRCYSPE 680

Query: 278 NLRNIPKEDEARQHKGKAME 282
              N+  E      KGK  E
Sbjct: 681 AFENLKNE------KGKEKE 694

[Close]

BLAST of Lsi06G007320 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.7e-24
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 1


Query: 24  ECRNTFLQEAVASFEGQLLIYRKAREVATDDYTRLKEEYQEMSTDFAVWRDEYDIVRHKY 83
           E +N FLQ+AV S E QLLI RKAREV TDDY +L E+YQEMS DF +W+DEY+ +R KY
Sbjct: 140 ESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKY 199

Query: 84  DDARNQIEQGAKKLRQMAKMADQFSAQAMTLQQ 117
           DDA  ++E+GA+KLRQMA +ADQFS QA TL+Q
Sbjct: 200 DDAIRRMERGAEKLRQMASVADQFSVQARTLRQ 232

[Close]

BLAST of Lsi06G007320 vs. NCBI nr
Match: gi|659094545|ref|XP_008448120.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490408 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 220 VEIPGPFAYKDNRAVPWKYECQFITNNVSR----GMTRSGRCYTPDNLRNIPKEDEARQH 279
           VEIPGPFAYKDN  VPWKYECQFIT+NV      G+TRSGRCYTPDNL+++ KEDE R+ 
Sbjct: 3   VEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRR 62

Query: 280 KGKAMEITSGDD 288
           KGKA+E+   DD
Sbjct: 63  KGKAIEMAGEDD 74

[Close]

BLAST of Lsi06G007320 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 208 VTSCIEIPKIIIVEIPGPFAYKDNRAVPWKYECQFITNNV----SRGMTRSGRCYTPDNL 267
           + S I+ PK + +EIP PFAYKDN  VPWKYECQFITNNV      G+TRSGRCYT  NL
Sbjct: 539 IMSYIQKPKAMTIEIPSPFAYKDNHVVPWKYECQFITNNVVSTTVEGLTRSGRCYTLANL 598

Query: 268 RNIPKEDEARQHKGKAMEI 283
           +++ KEDE R+ KGKA+E+
Sbjct: 599 KDVSKEDEVRRRKGKAIEM 617

[Close]

BLAST of Lsi06G007320 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-08
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 130 RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHELSS 184
           R +G        +I IGE IEFGVKN RITDF+SE+R+MMT KKKE E+HELSS
Sbjct: 293 RMVGSASTNFSDVIRIGERIEFGVKNERITDFSSETRRMMTLKKKEEEIHELSS 346

[Close]

BLAST of Lsi06G007320 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 130 RFLGVIGQYLGHIITIGEGIEFGVKNGRITDFASESRKMMTPKKKEGEVHEL 182
           R +G        +ITIGE IEFGVKNGRI D +SE R+MMTPKKKE E+HEL
Sbjct: 286 RMVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHEL 337

The following BLAST results are available for this feature:

BLAST of Lsi06G007320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E6J4_THECC	1.4e-06	34.44	Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1	[more]
A0A061EDD9_THECC	2.3e-06	38.75	Uncharacterized protein OS=Theobroma cacao GN=TCM_017392 PE=4 SV=1	[more]
A0A061F0F4_THECC	4.0e-06	37.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_022312 PE=4 SV=1	[more]
A0A061GRI1_THECC	4.0e-06	35.56	Gag-pro-like protein OS=Theobroma cacao GN=TCM_038877 PE=4 SV=1	[more]
A0A061FU58_THECC	5.2e-06	37.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_042889 PE=4 SV=1	[more]

BLAST of Lsi06G007320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128749\|ref\|XP_008464352.1\|	2.7e-24	65.59	PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis...	[more]
gi\|659094545\|ref\|XP_008448120.1\|	6.3e-21	69.44	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490408 [Cucumis me...	[more]
gi\|659122237\|ref\|XP_008461036.1\|	1.2e-19	62.03	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]
gi\|659102853\|ref\|XP_008452348.1\|	7.9e-08	62.96	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	2.3e-07	63.46	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007320.1	Lsi06G007320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007320	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007320	Wild cucumber (PI 183967)	cpilsiB080
Lsi06G007320	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007320	Cucumber (Chinese Long) v2	culsiB082
Lsi06G007320	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007320	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007320	Watermelon (97103) v1	lsiwmB391
Lsi06G007320	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007320	Cucumber (Gy14) v2	cgyblsiB076
Lsi06G007320	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007320	Silver-seed gourd	carlsiB830
Lsi06G007320	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007320	Cucumber (Chinese Long) v3	cuclsiB090
Lsi06G007320	Watermelon (97103) v2	lsiwmbB362
Lsi06G007320	Wax gourd	lsiwgoB521
Lsi06G007320	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007320	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007320	Cucurbita moschata (Rifu)	cmolsiB118