Lsi06G007310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Phytase
Location	chr06 : 12505322 .. 12505872 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTAAAACTTTCATTTTTTTAATTTAATCGTATTAGGTAGAAGTAAGGTAAGAAGGTAGTAAGAATAATGGAGTAATGGTATGGGATGTGTACATAGGTTTATAACGACATCATTGCGGCTTCTGGGCGAGGAAGTGTGATAGCAGATACATTATCAACAATCTCTGGTGCAGCAGGCATTTTGTTTCTCATTCTTGCAACTGGAATAATGGTATGGGACATCTTTACATCCGAACATATTCTCCAAACAGCCACAAAAGATGTGTTGGTGACTGCTGCGACAGTGGGTGGGGCAATGGTTGGACAAATTGTGGGAGCCGCCTTGCCAACTTTAGCTGGTGTTGAAGCTTCTTCTTTGTTTTTGATGGCCACTGCAGTTATAGGAAGCATTGTGGGATCCTTTGTGATTGGTGCCTTTGTTGGTTGGATGGTTGATCTTATCTTTAGCTCTGGAGGCCATTATCCTCATAGCACTGATGGCCACACTTGCTATGTTGCCCCATTGCCTGATGGTGAAGCCATCGCACGTCAAATCGATCATAACTAG

mRNA sequence

ATGCGAAGTAAGGTTTATAACGACATCATTGCGGCTTCTGGGCGAGGAAGTGTGATAGCAGATACATTATCAACAATCTCTGGTGCAGCAGGCATTTTGTTTCTCATTCTTGCAACTGGAATAATGGTATGGGACATCTTTACATCCGAACATATTCTCCAAACAGCCACAAAAGATGTGTTGGTGACTGCTGCGACAGTGGGTGGGGCAATGGTTGGACAAATTGTGGGAGCCGCCTTGCCAACTTTAGCTGGTGTTGAAGCTTCTTCTTTGTTTTTGATGGCCACTGCAGTTATAGGAAGCATTGTGGGATCCTTTGTGATTGGTGCCTTTGTTGGTTGGATGGTTGATCTTATCTTTAGCTCTGGAGGCCATTATCCTCATAGCACTGATGGCCACACTTGCTATGTTGCCCCATTGCCTGATGGTGAAGCCATCGCACGTCAAATCGATCATAACTAG

Coding sequence (CDS)

ATGCGAAGTAAGGTTTATAACGACATCATTGCGGCTTCTGGGCGAGGAAGTGTGATAGCAGATACATTATCAACAATCTCTGGTGCAGCAGGCATTTTGTTTCTCATTCTTGCAACTGGAATAATGGTATGGGACATCTTTACATCCGAACATATTCTCCAAACAGCCACAAAAGATGTGTTGGTGACTGCTGCGACAGTGGGTGGGGCAATGGTTGGACAAATTGTGGGAGCCGCCTTGCCAACTTTAGCTGGTGTTGAAGCTTCTTCTTTGTTTTTGATGGCCACTGCAGTTATAGGAAGCATTGTGGGATCCTTTGTGATTGGTGCCTTTGTTGGTTGGATGGTTGATCTTATCTTTAGCTCTGGAGGCCATTATCCTCATAGCACTGATGGCCACACTTGCTATGTTGCCCCATTGCCTGATGGTGAAGCCATCGCACGTCAAATCGATCATAACTAG

Protein sequence

MRSKVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVTAATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSGGHYPHSTDGHTCYVAPLPDGEAIARQIDHN

Homology

[Close]

BLAST of Lsi06G007310 vs. TrEMBL
Match: A0A0A0M0G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G650630 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.2e-63
Identity = 127/148 (85.81%), Postives = 139/148 (93.92%), Query Frame = 1


Query: 5   VYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVTA 64
           VYNDII ASGRGSV+ADTLSTISG AGILFLILA G++VWDIFT+EH+LQTATKDV++T 
Sbjct: 197 VYNDIIVASGRGSVVADTLSTISGVAGILFLILAAGVIVWDIFTAEHVLQTATKDVMMTV 256

Query: 65  ATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSGG 124
           ATVGGAMVGQ+VGAALPTLAGVEAS+LFLMATAVIGSIVG+FV+GAFVGW+VD IFSSGG
Sbjct: 257 ATVGGAMVGQVVGAALPTLAGVEASALFLMATAVIGSIVGAFVVGAFVGWLVDHIFSSGG 316

Query: 125 HYPHSTDGHTCYVAPLPDGEAIARQIDH 153
           HY H TD HTCYVAPLPDGEAIARQI H
Sbjct: 317 HYSHETDSHTCYVAPLPDGEAIARQIVH 344

[Close]

BLAST of Lsi06G007310 vs. TrEMBL
Match: F2CUN9_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           +VY++IIAA+G G  +        G  G+  L+    +MVWDI+T+E  LQ   +D +  
Sbjct: 216 QVYDNIIAAAGHGKPVVTYTFEALGKVGVAALVFTAAVMVWDIYTAEDKLQAGVRDAVNA 275

Query: 64  AATVGGAMVGQIVGAALPTLAGVEASSLFLMATA--VIGSIVG---SFVIGAFVGWMVDL 123
             +V   ++GQ+V  A+   AG  A ++ + + A  VIGS+VG     ++G   G ++DL
Sbjct: 276 LTSVVDLVIGQVVNTAV--RAGFAALNIQIASAAVTVIGSVVGFGIGVLVGVAAGALLDL 335

Query: 124 IFSSGGHYPHSTDGHT-CYVAPLPDGEAIARQIDHN 154
           IF SG      TDG + C VAP+PDG  +AR I HN
Sbjct: 336 IFGSGTSNVQITDGLSGCRVAPMPDGLELARLIKHN 369

[Close]

BLAST of Lsi06G007310 vs. TrEMBL
Match: W5DD94_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           +VY++IIA +G+G  +        G  G+  L+   G+MVWDIFT+E  L+   ++ +  
Sbjct: 197 QVYDNIIAQAGQGKPVVTYTFEALGKFGVAVLVFTAGVMVWDIFTAEDKLEAVVRNSVTA 256

Query: 64  AATVGGAMVGQIVGAALPTLAGVEASSLFLMATA--VIGSIVG---SFVIGAFVGWMVDL 123
                G +VG +  AA+   AG  A ++ + + A  V+G++VG     VIG   G ++DL
Sbjct: 257 LTAAVGLVVGDLAAAAVE--AGFIALNIQIASAAVTVVGAVVGFGIGVVIGIAAGALLDL 316

Query: 124 IFSSGGHYPHSTDGHT-CYVAPLPDGEAIARQIDHN 154
           IFSSG      TDG T C VAP+PDG  +AR + HN
Sbjct: 317 IFSSGTSQVKITDGLTVCRVAPMPDGLPLARLVKHN 350

[Close]

BLAST of Lsi06G007310 vs. TrEMBL
Match: M8D0V0_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_09889 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           +VY++IIA +G+G  +        G  G+  L+   G+MVWDIFT+E  L+   ++ +  
Sbjct: 224 QVYDNIIAQAGQGKPVVTYTFEALGKFGVAVLVFTAGVMVWDIFTAEDKLEAVVRNSVTA 283

Query: 64  AATVGGAMVGQIVGAALPTLAGVEASSLFLMATA--VIGSIVG---SFVIGAFVGWMVDL 123
                G +VG +  AA+   AG  A ++ + + A  V+G++VG     VIG   G ++DL
Sbjct: 284 LTAAVGLVVGDLAAAAVE--AGFIALNIQIASAAVTVVGAVVGFGIGVVIGIAAGALLDL 343

Query: 124 IFSSGGHYPHSTDGHT-CYVAPLPDGEAIARQIDHN 154
           IFSSG      TDG T C VAP+PDG  +AR + HN
Sbjct: 344 IFSSGTSQVKITDGLTVCRVAPMPDGLPLARLVKHN 377

[Close]

BLAST of Lsi06G007310 vs. TrEMBL
Match: A0A0K9RFW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071270 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           +VYN II  SGR ++    L  + G  GI  L+++ G+MVWDIFT+EH ++      L  
Sbjct: 207 QVYNSIIEESGRSAM--PKLEILKGGVGIAVLVVSAGLMVWDIFTAEHKVEALLNSSLTA 266

Query: 64  AATVGGAMVGQIV-GAALPTLAGVEASSLFL-MATAVIGSIVGSFVIGAFVGWMVDLIFS 123
              +G   V   V GA +  LA  E   L++ MA  V G++VG  V  A  G ++DLI  
Sbjct: 267 FKDIGAFAVQMAVDGAVMEALADAELGVLYVSMAAFVAGTVVG-LVFAAVAGAVIDLILG 326

Query: 124 SGGH-YPHSTDGHTCYVAPLPDGEAIARQIDHN 154
           SGG   P S D    + A +PDG A+A QI H+
Sbjct: 327 SGGKTVPSSVDNLKYHTAKMPDGMALAFQIAHD 356

[Close]

BLAST of Lsi06G007310 vs. NCBI nr
Match: gi|659085855|ref|XP_008443644.1| (PREDICTED: uncharacterized protein LOC103487192 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 8.4e-65
Identity = 129/148 (87.16%), Postives = 141/148 (95.27%), Query Frame = 1


Query: 5   VYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVTA 64
           VYNDII ASGRGSV+ADTLSTISG AGILFLILATG++VWDIFTSEH+LQT TKDV+VT 
Sbjct: 197 VYNDIIVASGRGSVVADTLSTISGVAGILFLILATGVIVWDIFTSEHVLQTVTKDVMVTV 256

Query: 65  ATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSGG 124
           ATVGGAMVGQ+VGAALPTLAGVEAS+LFLMATAVIGS+VG+FV+GAFVGW+VD IFSSGG
Sbjct: 257 ATVGGAMVGQVVGAALPTLAGVEASALFLMATAVIGSVVGAFVVGAFVGWLVDHIFSSGG 316

Query: 125 HYPHSTDGHTCYVAPLPDGEAIARQIDH 153
           HYPH+TD HTCYVAPLPDGEAIARQI H
Sbjct: 317 HYPHNTDNHTCYVAPLPDGEAIARQIVH 344

[Close]

BLAST of Lsi06G007310 vs. NCBI nr
Match: gi|449442773|ref|XP_004139155.1| (PREDICTED: uncharacterized protein LOC101203466 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 127/148 (85.81%), Postives = 139/148 (93.92%), Query Frame = 1


Query: 5   VYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVTA 64
           VYNDII ASGRGSV+ADTLSTISG AGILFLILA G++VWDIFT+EH+LQTATKDV++T 
Sbjct: 197 VYNDIIVASGRGSVVADTLSTISGVAGILFLILAAGVIVWDIFTAEHVLQTATKDVMMTV 256

Query: 65  ATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSGG 124
           ATVGGAMVGQ+VGAALPTLAGVEAS+LFLMATAVIGSIVG+FV+GAFVGW+VD IFSSGG
Sbjct: 257 ATVGGAMVGQVVGAALPTLAGVEASALFLMATAVIGSIVGAFVVGAFVGWLVDHIFSSGG 316

Query: 125 HYPHSTDGHTCYVAPLPDGEAIARQIDH 153
           HY H TD HTCYVAPLPDGEAIARQI H
Sbjct: 317 HYSHETDSHTCYVAPLPDGEAIARQIVH 344

[Close]

BLAST of Lsi06G007310 vs. NCBI nr
Match: gi|694407169|ref|XP_009378339.1| (PREDICTED: uncharacterized protein LOC103966850 [Pyrus x bretschneideri])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 74/152 (48.68%), Postives = 107/152 (70.39%), Query Frame = 1


Query: 1   MRSKVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDV 60
           ++ +V+  II ASGR ++     S + GAAGI  LI ATG MVWDIF++++ LQTA +D 
Sbjct: 196 VKIRVFGKIIFASGRANINVTAYSKMFGAAGIAVLIFATGFMVWDIFSADNPLQTAARDA 255

Query: 61  LVTAATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIF 120
           +VTAA++GGAM+G++VG AL ++  V A++L ++   +   I G+F+IG F  W++D++F
Sbjct: 256 VVTAASIGGAMIGEVVGVALASM--VTANALLVLMAGITAGIAGAFLIGEFATWLIDVVF 315

Query: 121 SSGGHYPHSTDGHTCYVAPLPDGEAIARQIDH 153
            SGG  P ST GH CYVA LPDG  +AR+I H
Sbjct: 316 GSGGSAPLSTMGHRCYVAHLPDGSVLARRIAH 345

[Close]

BLAST of Lsi06G007310 vs. NCBI nr
Match: gi|657999600|ref|XP_008392236.1| (PREDICTED: uncharacterized protein LOC103454422 [Malus domestica])

HSP 1 Score: 138.7 bits (348), Expect = 8.8e-30
Identity = 72/149 (48.32%), Postives = 102/149 (68.46%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           KVY  II+ SGR ++     S I GAAGI  LILA GI+VWDI+++++ LQTA +D + T
Sbjct: 199 KVYGTIISKSGRANIDVTAYSKIFGAAGIAVLILAAGILVWDIYSADNPLQTAARDAVTT 258

Query: 64  AATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSG 123
           AA +GGAM+G++VG AL ++  V  ++L ++   +   I G+F+IG F  W++++IF SG
Sbjct: 259 AAAIGGAMIGEVVGVALASM--VTGNALLVLMAGITAGIAGAFLIGEFAIWLINVIFGSG 318

Query: 124 GHYPHSTDGHTCYVAPLPDGEAIARQIDH 153
           G  P ST GH CYV  LP+G  +ARQI H
Sbjct: 319 GSAPLSTMGHRCYVTQLPEGSVLARQIAH 345

[Close]

BLAST of Lsi06G007310 vs. NCBI nr
Match: gi|658049895|ref|XP_008360656.1| (PREDICTED: uncharacterized protein LOC103424346 [Malus domestica])

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29
Identity = 71/149 (47.65%), Postives = 102/149 (68.46%), Query Frame = 1


Query: 4   KVYNDIIAASGRGSVIADTLSTISGAAGILFLILATGIMVWDIFTSEHILQTATKDVLVT 63
           KVY  II+ SGR ++     S I GAAGI  LILA GI+VWDI+++++ LQTA +D + T
Sbjct: 199 KVYGTIISKSGRANIDVTAYSKIFGAAGIAVLILAAGILVWDIYSADNPLQTAARDAVTT 258

Query: 64  AATVGGAMVGQIVGAALPTLAGVEASSLFLMATAVIGSIVGSFVIGAFVGWMVDLIFSSG 123
           AA +GGAM+G++VG AL ++  V  ++L ++   +   I G+F+IG F  W++++IF +G
Sbjct: 259 AAAIGGAMIGEVVGVALASM--VTGNALLVLMAGITAGIAGAFLIGEFAIWLINVIFGTG 318

Query: 124 GHYPHSTDGHTCYVAPLPDGEAIARQIDH 153
           G  P ST GH CYV  LP+G  +ARQI H
Sbjct: 319 GSAPLSTMGHRCYVTQLPEGSVLARQIAH 345

The following BLAST results are available for this feature:

BLAST of Lsi06G007310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G007310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0G8_CUCSA	3.2e-63	85.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G650630 PE=4 SV=1	[more]
F2CUN9_HORVD	2.8e-14	37.82	Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1	[more]
W5DD94_WHEAT	2.8e-14	37.82	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
M8D0V0_AEGTA	2.8e-14	37.82	Uncharacterized protein OS=Aegilops tauschii GN=F775_09889 PE=4 SV=1	[more]
A0A0K9RFW2_SPIOL	3.0e-13	39.22	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071270 PE=4 SV=1	[more]

BLAST of Lsi06G007310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G007310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085855\|ref\|XP_008443644.1\|	8.4e-65	87.16	PREDICTED: uncharacterized protein LOC103487192 [Cucumis melo]	[more]
gi\|449442773\|ref\|XP_004139155.1\|	4.6e-63	85.81	PREDICTED: uncharacterized protein LOC101203466 [Cucumis sativus]	[more]
gi\|694407169\|ref\|XP_009378339.1\|	1.6e-31	48.68	PREDICTED: uncharacterized protein LOC103966850 [Pyrus x bretschneideri]	[more]
gi\|657999600\|ref\|XP_008392236.1\|	8.8e-30	48.32	PREDICTED: uncharacterized protein LOC103454422 [Malus domestica]	[more]
gi\|658049895\|ref\|XP_008360656.1\|	2.0e-29	47.65	PREDICTED: uncharacterized protein LOC103424346 [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007310.1	Lsi06G007310.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G007310	Cla002543	Watermelon (97103) v1	lsiwmB391
Lsi06G007310	ClCG03G011130	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007310	Cla97C03G061590	Watermelon (97103) v2	lsiwmbB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007310	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007310	Cucumber (Chinese Long) v2	culsiB082
Lsi06G007310	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007310	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007310	Cucumber (Gy14) v2	cgyblsiB076
Lsi06G007310	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007310	Silver-seed gourd	carlsiB830
Lsi06G007310	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007310	Cucumber (Chinese Long) v3	cuclsiB090
Lsi06G007310	Wax gourd	lsiwgoB521
Lsi06G007310	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007310	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007310	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007310	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007310	Wild cucumber (PI 183967)	cpilsiB080