Lsi06G007030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome c biogenesis FN
Location	chr06 : 11219558 .. 11219943 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTAAAAGATAATTGTGTTGTTACAAAAATTTGTCATGATAATTCAAACCTCTTGACAAACTGTTGAGTTTATCAAATACAATAATGTGACACTAAAAAAAATAAACTGGTTTTCTAATTTTTGAAAAGTCATAGGTTCGAATCCTTCCACCTTTCTTGTAGATCATTCTGTGGTTACCGGATGATGGGAATAACAAAGCAAAAATTTGGAAATGAGCACGAAATGTCAATATATGAATTGTTTCATTATTCGTTATTTTCCAGTCTTTTTGTTGCATTCACCTATAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTAATTCTTTGGTCTTTCGTTCCGTCATATTTCTAA

mRNA sequence

ATGATGTTCGAATCCTTCCACCTTTCTTGTAGATCATTCTGTGGTTACCGGATGATGGGAATAACAAAGCAAAAATTTGGAAATGAGCACGAAATGTCAATATATGAATTGTTTCATTATTCGTTATTTTCCAGTCTTTTTGTTGCATTCACCTATAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTAATTCTTTGGTCTTTCGTTCCGTCATATTTCTAA

Coding sequence (CDS)

ATGATGTTCGAATCCTTCCACCTTTCTTGTAGATCATTCTGTGGTTACCGGATGATGGGAATAACAAAGCAAAAATTTGGAAATGAGCACGAAATGTCAATATATGAATTGTTTCATTATTCGTTATTTTCCAGTCTTTTTGTTGCATTCACCTATAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGTATTCTTCTTTCTTTAATTCTTTGGTCTTTCGTTCCGTCATATTTCTAA

Protein sequence

MMFESFHLSCRSFCGYRMMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSFVPSYF

Homology

[Close]

BLAST of Lsi06G007030 vs. Swiss-Prot
Match: CCBS_DAUCA (Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.6e-15
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 32 MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF 79
          MSIYELFHYSLF  LFVAFTYNKKQPP FGAA AFWCILLS +  SF
Sbjct: 1  MSIYELFHYSLFLGLFVAFTYNKKQPPVFGAALAFWCILLSFLGLSF 47

[Close]

BLAST of Lsi06G007030 vs. Swiss-Prot
Match: CCMF1_ARATH (Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 OS=Arabidopsis thaliana GN=CCMFN1 PE=1 SV=3)

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-14
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1


Query: 32 MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI 75
          +SIYE FHYSLF  LFVAFTYNKKQPPAFGAA AFWCILLS +
Sbjct: 3  ISIYEFFHYSLFLGLFVAFTYNKKQPPAFGAALAFWCILLSFL 45

[Close]

BLAST of Lsi06G007030 vs. Swiss-Prot
Match: CCBS_OENBE (Probable cytochrome c biosynthesis protein OS=Oenothera berteroana PE=2 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1


Query: 32 MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLI 75
          MSI ELFHYSLF  LFVAFTYNKK+PPAFGAA AFWCILLS +
Sbjct: 1  MSIVELFHYSLFLGLFVAFTYNKKEPPAFGAALAFWCILLSFL 43

[Close]

BLAST of Lsi06G007030 vs. TrEMBL
Match: W5AS10_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-23
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQKFGNEHEMSIYELFHYSLF  LFVAFTYNKKQPP FGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQKFGNEHEMSIYELFHYSLFPGLFVAFTYNKKQPPVFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. TrEMBL
Match: J9JER9_MALDO (CcmFN protein OS=Malus domestica GN=ccmFN PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQKF NEHEMSIYELFHYSLF  LF+AFTYNKKQPPAFGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQKFLNEHEMSIYELFHYSLFPGLFIAFTYNKKQPPAFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. TrEMBL
Match: M4YQL7_LOLPR (Cytochrome c biogenesis FN OS=Lolium perenne GN=ccmFN PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 51/61 (83.61%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQKFGNEHEMSI E  HYSLF  LFVAFTYNKKQPPAFGAAPAFWCILL  +  S
Sbjct: 1  MMGITKQKFGNEHEMSINEFSHYSLFPGLFVAFTYNKKQPPAFGAAPAFWCILLPFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. TrEMBL
Match: K3YZP0_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_019750mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-20
Identity = 50/60 (83.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 19 MGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF 78
          MGITKQKFGNEHEMSI E  HY LF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Sbjct: 1  MGITKQKFGNEHEMSINEFSHYLLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLSF 60

[Close]

BLAST of Lsi06G007030 vs. TrEMBL
Match: A0A096T6F7_MAIZE (Uncharacterized protein OS=Zea mays GN=ccmFN PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 50/61 (81.97%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQK GNEHEMSI E  HY LF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQKLGNEHEMSINEFSHYLLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. TAIR10
Match: ATMG00830.1 (ATMG00830.1 cytochrome C biogenesis 382)

HSP 1 Score: 83.2 bits (204), Expect = 8.4e-17
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 32 MSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF 79
          +SIYE FHYSLF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Sbjct: 3  ISIYEFFHYSLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLSF 49

[Close]

BLAST of Lsi06G007030 vs. NCBI nr
Match: gi|404481687|ref|YP_006666116.1| (CcmFN (mitochondrion) [Malus domestica])

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQKF NEHEMSIYELFHYSLF  LF+AFTYNKKQPPAFGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQKFLNEHEMSIYELFHYSLFPGLFIAFTYNKKQPPAFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. NCBI nr
Match: gi|823124896|ref|XP_012482014.1| (PREDICTED: probable cytochrome c biosynthesis protein [Gossypium raimondii])

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-21
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQ F N+HEM IYELFHYSLF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQNFRNKHEMPIYELFHYSLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. NCBI nr
Match: gi|472833553|gb|AGI48777.1| (cytochrome c biogenesis FN (mitochondrion) [Lolium perenne])

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 51/61 (83.61%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQKFGNEHEMSI E  HYSLF  LFVAFTYNKKQPPAFGAAPAFWCILL  +  S
Sbjct: 1  MMGITKQKFGNEHEMSINEFSHYSLFPGLFVAFTYNKKQPPAFGAAPAFWCILLPFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

[Close]

BLAST of Lsi06G007030 vs. NCBI nr
Match: gi|944265144|gb|KQL29384.1| (hypothetical protein SETIT_019750mg, partial [Setaria italica])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 50/60 (83.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 19 MGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWSF 78
          MGITKQKFGNEHEMSI E  HY LF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  SF
Sbjct: 1  MGITKQKFGNEHEMSINEFSHYLLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLSF 60

[Close]

BLAST of Lsi06G007030 vs. NCBI nr
Match: gi|414871204|tpg|DAA49761.1| (TPA: cytochrome c biogenesis FN [Zea mays])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/61 (81.97%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 18 MMGITKQKFGNEHEMSIYELFHYSLFSSLFVAFTYNKKQPPAFGAAPAFWCILLSLILWS 77
          MMGITKQK GNEHEMSI E  HY LF  LFVAFTYNKKQPPAFGAAPAFWCILLS +  S
Sbjct: 1  MMGITKQKLGNEHEMSINEFSHYLLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLS 60

Query: 78 F 79
          F
Sbjct: 61 F 61

The following BLAST results are available for this feature:

BLAST of Lsi06G007030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCBS_DAUCA	9.6e-15	82.98	Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1	[more]
CCMF1_ARATH	4.8e-14	83.72	Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 1 OS=Arabidop...	[more]
CCBS_OENBE	1.1e-13	83.72	Probable cytochrome c biosynthesis protein OS=Oenothera berteroana PE=2 SV=3	[more]

BLAST of Lsi06G007030 vs. TrEMBL


Match Name	E-value	Identity	Description
W5AS10_WHEAT	5.1e-23	88.52	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
J9JER9_MALDO	3.3e-22	86.89	CcmFN protein OS=Malus domestica GN=ccmFN PE=4 SV=1	[more]
M4YQL7_LOLPR	1.8e-20	83.61	Cytochrome c biogenesis FN OS=Lolium perenne GN=ccmFN PE=4 SV=1	[more]
K3YZP0_SETIT	9.0e-20	83.33	Uncharacterized protein OS=Setaria italica GN=SETIT_019750mg PE=4 SV=1	[more]
A0A096T6F7_MAIZE	1.2e-19	81.97	Uncharacterized protein OS=Zea mays GN=ccmFN PE=4 SV=1	[more]

BLAST of Lsi06G007030 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00830.1	8.4e-17	82.98	ATMG00830.1 cytochrome C biogenesis 382	[more]

BLAST of Lsi06G007030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|404481687\|ref\|YP_006666116.1\|	4.8e-22	86.89	CcmFN (mitochondrion) [Malus domestica]	[more]
gi\|823124896\|ref\|XP_012482014.1\|	9.0e-21	83.61	PREDICTED: probable cytochrome c biosynthesis protein [Gossypium raimondii]	[more]
gi\|472833553\|gb\|AGI48777.1\|	2.6e-20	83.61	cytochrome c biogenesis FN (mitochondrion) [Lolium perenne]	[more]
gi\|944265144\|gb\|KQL29384.1\|	1.3e-19	83.33	hypothetical protein SETIT_019750mg, partial [Setaria italica]	[more]
gi\|414871204\|tpg\|DAA49761.1\|	1.7e-19	81.97	TPA: cytochrome c biogenesis FN [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0017004	cytochrome complex assembly
GO:0015886	heme transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015232	heme transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003569	Cyt_c_biogenesis_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016020	membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0015232	heme transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007030.1	Lsi06G007030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003569	Probable cytochrome c biosynthesis protein, plants	PRINTS	PR01412	CCBSBIOGNSIS	coord: 36..51 score: 4.3E-9coord: 66..78 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007030	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007030	Watermelon (97103) v2	lsiwmbB362
Lsi06G007030	Wax gourd	lsiwgoB511
Lsi06G007030	Wax gourd	lsiwgoB521
Lsi06G007030	Cucumber (Gy14) v1	cgylsiB573
Lsi06G007030	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G007030	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007030	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G007030	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007030	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G007030	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G007030	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007030	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007030	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007030	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007030	Watermelon (97103) v1	lsiwmB391
Lsi06G007030	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007030	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007030	Silver-seed gourd	carlsiB485
Lsi06G007030	Silver-seed gourd	carlsiB886