Lsi06G006800 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G006800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 10599011 .. 10604106 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGAGCTGCATTTGGTTTATTTAAACTGTGATGTTCCTTGGCGTATTTGCGGTGACATCAACATGACTTTATAAATAGGGGAATGCGTCATTTTAATTATCTTGTTACTAAGCTAAGACGTATGAAATTATGATTGTCAAATGGAAAATTATCTTGGCTAAAACCGAATGTTGACTCTAGCCCATCGTTAATTGACAGCTTTTTAGTTACAAGGGAATGGATGAGATATTTGATAACTCTAGGGTATCCAAACAAGTCCAAATCTTCTGTCCATTTTCCTCTCATCCTTGAAGTCGGAAGCTTTGCTTGGAGTCCAACCGCTTTTCGGTTCTATCATCGTTGGTTGAGTATCCCAGATTGATTTCCTTTTGTGGAAGAATCTGTTGCAAAAGATGAATCATATGGATGACAGGTTATGCTATTCACTCAAAATTAAGAAATTTGAAGACTTGTATCAAGAAATGGTTTGGTAATTTTGAAGTACAAAGAAAAGTAAGGAGGAGAGCCTCATTGCTGGAAGCCTGGAATTGCATGGTTTGTTTTGAAAGTTGAAAATAATTTATTATCTTCAGAGGAAAATAGTTTCCAATCTCATGCTAAAAGTGAACTTTCGAGAATTTACATGGTGGTGGAAAGGACTTCAATTCAAAAGTGTAAACTTTTTTGGTTTAAGTCCAGAGCAGCAAGTGAAGGAAATCTCTTATTTCAAATCTTATTTCTTCAAGTGTACATACATTATTATCTTTTAGCAGCGAGAATCTTTCTATCTTGCTATGTTCATTCTTTTTATTGTTATTTTACGTATTGTTATTGTTTCTCTTATTTCCCTTCGTCGTGGTGTTTGTATCTTTTGAGCATCAGTCTCTTTTCATTTCATCAATGAAAAGTTTTGTTTGTTGTTCAAAAAGAAATCCATCCTGCATTTCCTAAATTACCTTCCAAACTAATTTTTGAATTCCAGGAAGAAATAGAAACTACTTAACCATCATGGGTTGACCTAGTGGTAAAAAAGGAGACGTAGTCTCAATAAATGGCTAGGAGGTCATGAGTTCAATCTATGGTGCCCACCTACCTAGGAATGAATATCCTACGAGTTTCTTTGACACCTAATTTATTTTATTTTATTTTATTTTTATTTTATTTTTTTTGAAAATGAAACAAGTCTCTTCATTGATAATAATGAAATGAGACTATTGCTCGAAATTATAATAATGATACAAGAGCAAAAGAGTAAATCAAAACTATGGATCGGTGAACGCACCCAGACATCTCAACTATGTTGACACCCCTTTAGCACTCTCATCATCTCCAAATAGAGATACAAGGATAGTAATCACCAAAATAAAGAAAACAACCCAAATACAACGGGTAGTAAAATATCTAAAATACAGCCATAATGAAAAACTATGAATGGAAAAATCTGCAAAAGATCTTGAGAGTGTGCACCAAGAAGAAGCGTTGAGTCAAGCAATCTCAAATCTATCCATCCAAGGTGTAGCTTTATCATAGAATACTCTTTGATTCCTTTCAAACCAAATTTCCACTAACAAAGCTTTGACCGCATTAAACCAAATTTCCTTGACACCTAAATGTTGTAGGGTCAGGCAAGCTGTCTTGTGAGACTGGTCTGCATGGAAGCTGGCTCGGACACTCATGGATATTAAAAAAAAAAACCGGAAACTACTTCTTTCCTATTCCATTAAGCAGAAAAGAAATTTTCACAGGTCATCCAAACTTCCTTTTTTTTTTTTTTTTTTTTTCCATAAGCAAATAATATCGATGAGCATAACTAATGAAGAAGGATTTATTAGCAACACAGAAACTTCATTTCATTTTGTATATTAAAAGCTTAACAAGACACTTCAAAAGCTAACAAAAGATAAAGAACCTAGGTCGAGGGGAGAGCAAGCCCTTGCTGTCCCCAAAAGGGTCCTTTTTTTGGTGTTTCAAATGACAAACCATGGTTCTTAGCCGTCAAGTGGAATTGGAACCTTGACCTTAAATGTTATGTTTAAGGAAGAAGGGTGATAGGTATCTTTTATTTACTTATAGTTCTCCAAAGAGAAATTACAACCTATCAACTATGACCAATTCGAGAGGGTCACAATCTCTCCCTACTACTAACTTCACAAAAGAACCACACCCTTTTCCAGAACAACCCCTACATATATAACCACACAAAATACAAAATTCAAATACAATAACTGCTTTTAAAAATAACCACCAAATTAACTACTTGTCCTTCCTGTCCCTTCTAGCATATACATTGACAATTGGAGGTTTAATAGAGGGTGTTATCTTCATACTTGACTTTGAAAAGGCTTTTGACCACATTAATTGAGATATTTTGGATAAGGTGTTGGAGAAGAAAGGATTTGGGTACAAATGGAGAATGTGGATGTTGGGTTATGTTAGAAATGTGAACTACTCTATCCTTATTAACGAAACTCCTAAGGGATCGATCCACACTTCTAGACGCTTAAGACAAGGAGACCCCTTTTCCCCCTTCTTGTTCTTAATTGTCGTGGATGTCTTAAGCGTCTAATTTTAAGGGGGGTGGATGGAAATATCATTGAGCCTTTTAGGGTTGGTTCTGATGAGGTTGCTTTATCCCATTTCCAGTTTACCGATGATACCATGTTGTTCTGCTCTGGCAATGAGGACTCTTTGTTTATTCTTAACCATATGATGGGTTTTTTTGAGTCCATGTCTGGGCTTAAAATTAATGGAGTAAGTGCCAGATCTTCGGTATAAATTGCGATACGGATAAGCTTGAAAGGTGGGTGAGTGTGGTTGGTTGTATGGCTGGATCCTTTCCTTCTTGTTATCTTGGCCTCCCTTTTGGGTGTAATTCAAGGGCTCTGTCCTTTTGGGATCCTATTTTTGAGAAAATTCGTAGAAGGCTTGCCTCTTGGAAGAAAGGTTACTTTTCAAAGGTGGGTAGACTTACTCTAGTCAAATCTGTGCTGGGTGGTATCCTTGTTTATTATCTCTCCCTATTTAGGGCTCCATGTTCGGTTTGCAAAATTATGGAGAAGTACATGAGAGATGCCCTGTGGAAAGGATGGATGAAGAAAAGGGTTCTCATCTGGTTAGCTGGGAGGTGGATGGACGCTCTGTGAACTAGGGTGGGTTGGAGGTTGGAAATTTAAGGCTTCGTAAGAAAGCTTTGTTGGCTAAGTGACTTTGGCGTTTTTCCCTTGATCTTAAATCTTTATGGTATAGAATCATTGTGAGTAAGCATGATACTCACCCTTTTGAATGGTTGGCGAAGGAGGTTAAAGGCACACATCGAAATCCTTGAAAGGATATTGTGATCGAGCTTCCCTCGTTCTCCCATTTGGTTCGTTACATAGTGGGGGATGGTAAAGAAACGTATTTTTTGGAAGATCAATGGGTTGGGCCAGTCCCCTTTGCTTTGCATTTCCTCATCTTTATCACTCGTCTTCTTTAAAAAAACCACCAATTATTTGACATTTCTGCATGCTCGGGGAGCTCTGTGTCTTTTTCTTTCGGTTTCCGCTGTCATTTATCCAATAGGGAGACGGCGAAGATTGCCTCTCTTTTTTCTTTGTTGGAAGGGTGCAAGTTTAGAGAGGGGAGAAGGCATTTTCATGTGTGGAAGCCTAATCCTATTGATGGCTTTCCTTGTAAATCGTTCTTTGCTGGATCCCTCTCCTGTTAGTGAGTCGGTCTTTAATGTGCTCTGGAGCATTAAGATACCAAAGAAAATGAAGTTCTTGGTCATGGGGCCCTTTTGTTGTATTTTCTGTCGGAAGGCGAAGGAAATCCTGGATCACCTTCTTTGGGGTTGGCAGTTTGCGAGGTTTGTGTGGAGTTGCTTCTTACAGGAGTGTGACATGCAGATTGCTACCCAGAGGGATATTCGTGCGATGATCGAGGAGTTCCCTTTCCATCGCCTTTCAGAGAGAAGAGGCCATTTGTTGTGGTCTGCTAGGGTGTACGTTGTGTTGTGGGACATTTGGGAAGAGAGAAACAATAGGGTGTTTAGGGGGTTGGACAAGGATCCTAGCGAAGTTTGGTCCTTAGTGAGGTTTCACGTTTTTCTTTAGGCTTTGGTTTCGAAGCCTTTTTGTAATTATTTTCTTGGTAACATCTTACTCAGCTGGAAACCCTTTCTTTAGGGAGAGACTGTTTTTTTGTAGTCTTGTTTTTTTTTTAGGCCCCTGTATTATATTCTTTTATTCTTTCTTAATGAAAGCTTTTGATTTAATAAAAAAAAAAGTGGTTGCATGACTCCATCAAGTGGTATATCAGTTGGAACTCCCTCTTCCGCTTCCTCTAGGTAGAGATTATGTTAGAATCAGTGCAACAACCTCAAAGTAGGGATTATGGGTTAACATTGGTATATTTGGTAGTTTCTCTATTTTATTTTAACCTTTTGTAGTAAATAGGGTCACAGAACTATTAAATTTCAGGTACATGACTGCATAAGTTGGATTGATCTCTTCATGAAAGGGACGTTCCTGTTGATGCGATGGATTAATTGACCTTTCATGAAATTCATGCCCTTTTTACTACGTTTTGTTGAATGATTGATGCAAATGATTATAATTATTTTGATTTGATATGCAGATTTTTTTTCGTCTACCATAATGTCAATAATGTAATTACTTTTTATCAGGAAATACTGTCAAGAAGTTGCAAAGATGATATTCATCAAGACAATGGTGGAGTGTAAAATTTGGGTGGAATCTGCGACCATCAATATATTAGTCAATTCTGTCGAGATGGTCAATCCACCGAACCAGAGAGTTCTAATCTTTCTAAGAATGGTTGTCTCATTTCTTCTTTAGAAAGAATGGTTGTCTCATTTCTTCTTTGTAGAGATTAGCTATCTTTTTTCTATCTTCTGATTAAAATGAAACAAGAATTCTTTGTCAACGGAGGATATCAATGTATTCATTAGTTTGGTGATGGTAGTATGTTTGAGAATTTGCGTACAGTTACATGTGCATAGTAGTCTTGGTTTTTTTTTTTTTTTTTTTTTACCAGAAACAATTCATTGAAGCACTTTCTGATTTCCAAAGGAAGTTGCCTGAAAATCTTCCACTTCCCAAGTGTACCTAG

mRNA sequence

ATGGGGAAATACTGTCAAGAAGTTGCAAAGATGATATTCATCAAGACAATGGTGGAGTGTAAAATTTGGGTGGAATCTGCGACCATCAATATATTAGTCAATTCTGTCGAGATGAAACAATTCATTGAAGCACTTTCTGATTTCCAAAGGAAGTTGCCTGAAAATCTTCCACTTCCCAAGTGTACCTAG

Coding sequence (CDS)

ATGGGGAAATACTGTCAAGAAGTTGCAAAGATGATATTCATCAAGACAATGGTGGAGTGTAAAATTTGGGTGGAATCTGCGACCATCAATATATTAGTCAATTCTGTCGAGATGAAACAATTCATTGAAGCACTTTCTGATTTCCAAAGGAAGTTGCCTGAAAATCTTCCACTTCCCAAGTGTACCTAG

Protein sequence

MGKYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKCT
Homology
[Close]
BLAST of Lsi06G006800 vs. TrEMBL
Match: A0A0A0M027_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-09
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3   KYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKC 62
           KY QE+AKMIFIKTMVECKIWVESATINI+VNS+EM      L+   +++   L +P C
Sbjct: 168 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEM------LNPLNQRVLIFLKMPLC 220

[Close]
BLAST of Lsi06G006800 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3   KYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKC 62
           KY QE+AKMIFIKTMVECKIWVESATINI+VNS+EM      L+   +++   L +P C
Sbjct: 512 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEM------LNPLNQRVLIFLKMPLC 564

[Close]
BLAST of Lsi06G006800 vs. NCBI nr
Match: gi|700211553|gb|KGN66649.1| (hypothetical protein Csa_1G652810 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3   KYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKC 62
           KY QE+AKMIFIKTMVECKIWVESATINI+VNS+EM      L+   +++   L +P C
Sbjct: 168 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEM------LNPLNQRVLIFLKMPLC 220

[Close]
BLAST of Lsi06G006800 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3   KYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKC 62
           KY QE+AKMIFIKTMVECKIWVESATINI+VNS+EM      L+   +++   L +P C
Sbjct: 512 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEM------LNPLNQRVLIFLKMPLC 564

[Close]
BLAST of Lsi06G006800 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 3   KYCQEVAKMIFIKTMVECKIWVESATINILVNSVEMKQFIEALSDFQRKLPENLPLPKC 62
           KY QE+AKMIFIKTMVECKIWVESATINI+VNS+EM      L+   +++   L +P C
Sbjct: 512 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEM------LNPLNQRVLIFLKMPLC 564

The following BLAST results are available for this feature:
BLAST of Lsi06G006800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G006800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M027_CUCSA9.2e-0961.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1[more]
BLAST of Lsi06G006800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G006800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664064|ref|XP_011660209.1|1.3e-0861.02PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus][more]
gi|700211553|gb|KGN66649.1|1.3e-0861.02hypothetical protein Csa_1G652810 [Cucumis sativus][more]
gi|659085896|ref|XP_008443663.1|1.3e-0861.02PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel... [more]
gi|778664067|ref|XP_011660210.1|1.3e-0861.02PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006800.1Lsi06G006800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G006800MELO3C010033.2Melon (DHL92) v3.6.1lsimedB420
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G006800Cucurbita moschata (Rifu)cmolsiB059
Lsi06G006800Cucurbita moschata (Rifu)cmolsiB118
Lsi06G006800Cucurbita pepo (Zucchini)cpelsiB017
Lsi06G006800Cucurbita pepo (Zucchini)cpelsiB299
Lsi06G006800Wild cucumber (PI 183967)cpilsiB059
Lsi06G006800Cucumber (Chinese Long) v2culsiB058
Lsi06G006800Melon (DHL92) v3.5.1lsimeB398
Lsi06G006800Watermelon (Charleston Gray)lsiwcgB361
Lsi06G006800Watermelon (97103) v1lsiwmB391
Lsi06G006800Cucumber (Gy14) v2cgyblsiB055
Lsi06G006800Silver-seed gourdcarlsiB485
Lsi06G006800Silver-seed gourdcarlsiB886
Lsi06G006800Cucumber (Chinese Long) v3cuclsiB068
Lsi06G006800Watermelon (97103) v2lsiwmbB362
Lsi06G006800Wax gourdlsiwgoB511
Lsi06G006800Wax gourdlsiwgoB521
Lsi06G006800Cucumber (Gy14) v1cgylsiB573
Lsi06G006800Cucurbita maxima (Rimu)cmalsiB073
Lsi06G006800Cucurbita maxima (Rimu)cmalsiB128