Lsi06G006790 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G006790
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA helicase family protein
Locationchr06 : 10551407 .. 10560637 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTAACAGTTTAGTTGCTCCTTGCAATTATTCTCTCTTGGTTTACTAGAGGTTTCAATTTTTATTTTTACCTTTTTTACCCAAGGGTTGGCTCGGTTGTTCTTTATTTCAGTGGAAGGGATCTGTATGCTGTGATCGTTCTTATTTACCCAAGAGTTGGCTCGGTTTGCTGAGTTTGAAATCAATAGATCTGCATAGAAATTTCCATTGTTCAAGGCTTGCCTTTTGTTGATAAATTGGCTAATCTACACTCTATTGAGTTTGAATTTGGATCTGGTATTTAAGGTGTCTTGTTGCAGAGTTTTCCGGTCAGATGACAACCTTAATCGTATTTATAGAAGCTGTTTGTATTTTCTCTACAGAGGTTGAAGATCGGTTCATGATTTCCTTTGGAAGGTTGTATCAGCTTTTGGTTCAATGTTTGCTGGAGGCCTTTTTCATAGATAACCAGTTTTTGTTTGCAAGCTCTCCAAGTCTCAGTTGAAGGTTTTGAAAAAGCTCTTTGTTCTTTTAATGCTTATACTCTTGGTTAATTTTCTTTATGGGTGTATGTACTGTGTTGCATTTTTCTTTTTCTTTTTCTGTCCCTTTGGAAGTTTGTATTCCTGAACATTACGGGTGTATTTACTCCTTTTCATTATATCAATGATGAGTTGTTTCTTGTTTTGAAATAAAACAGATTTTTCAATTGGTTAAAACCATAGGATACAGTCCGATGCTTATACTTATTTACATACAGATCACCCATATGCTATTAATATACATACTAACGTTGTACCTCTAAAACTTCACCAATGACACCACCACTGTGTGAAGAAACACCTGTCTGCTGCTGTCCAATTCTTGAAAAAGCTTGATCATCAAACGTAAATGCAACAATACCCTGCAGGAATAGAAGCATGCAATAACAAATTGATACATCAAAGCCACTTGATTAGAGAAATTCCTCATGCAGATGAATACCTTCCTCGCAGCTTTACTGAACTGAGTGGTAGCATCACTAAAGGCGTAAACTGTATTACTTAAGAGACTTGTAGTTCCTTGTACCATGCCAGTGATAAGCCCAGTTGGACTCTTAAAATAAAACAACCGGATTTCAGTGTATCAACAAGAGAGGGGGGAAAAAAAAGAAAAAAAAGAAAAGTACAGGGAAAAAGAACCTGCAAAATGCTCTTGGCAGGCACCGACAAGAAATCTCTTATTCCAATCCCCAATCTCCTAGCAAATCCCATGGGATTACCAATGACACCAGCAGAACCAAAAACCTGTCAAATAAGGTGAATCCGGAATTGGTAAAAGAATTAGCTAATCAATTTACTTTTATTTTGATATTGGAAACAAACAATTATGACTTATTGAAAATAATACATCCAAGAAGCCCATTCAAGGAGTATAACTTGGCCCATCTCTTCATGGACCAAGATCCCATACTTTTCACTTCATTCCTCCTATTCGAATTCGAATCTCTTTTATTTTGTTTCCTTTTTTTGTCTTAATCATTTTCCTATTTTTTGGCTTGCTTCGGTTACTGTTAGTTGTATTTCCATATTTTTTTCATTCTTCTCCCTAAAAATCTAAGGTTGTAGATGTTATAATATGTCGTTAATTGTAATTATCTATGTATATTGTCCTTAATTGTAATTTCATATTTTCTAGATTAGGGTTTCTATCTCGCCTATATATATGTAACTCAAGTCTTATGGAATACACTTTTGTGAGATTCATTCTCTGAATTATAGAGTACATGGTATCAGAGCCCTCTAGGGTTTCGAACTTTCGTTTGACGGCAACATTCTCATAGAGTTAGGGTTTGGTATTTTGGTCATCGAGTTCGAGTGGCCGTTTGTCGACATCACCCACCTCAGGAGAAGCGCCACCACCGACGCCGTCTATCTTCGTTAGTCGCCGGGAACTGCCGCGCGTGAGGCTCACGCGTCGCCTGAAGCTCGAGCCCCTTCGTCACGCGCTGGAGCGTGGGAGCGCGTGGGACCTTCGGTTCCACTTCCGTCAGCTGAGTTCGTCTCGGTTTTGAGTTTCCGACCTGTCTGTACCTTTGGTTCCATCGAAATCGTCTCGGGTGTGAGGTTATTTCGAAAATACCCTTTTTGCTCTTAGGGTTTGTGACTGTTTTGGTCCTTTTTGGGGCTGTTTTAGTTATTCCGGGTCTTTGGTTCACTGTTTTTTTTGCATTTACCCTATTTTCGAGATCTACAAGTTGTGTGGTACGTTGTCATGGCTGAACCGACACATATGGTGGTATCTAATGTACTTCCCTTATCATCCAAGATCACCGAACACAAGTTAAATGGATCTAATTATTATGAGTGGCGATAAACGATTAAGTTTTACTTACTGAGTACTGATATGGATGATCATGTGACTGAGGATCCACCGAAAGATGATAAGACAAAGGGTTGGCTTTGCGACGATGCTCGTCTTTATCTTCAGATTAAGAACTCCATTGAGAGTGAAGTCGTTGGCTTGGTGAATCATTGTAATTCTGTGAAGGAAGTTTTACAGTTCTTGGAATTTCTTTATTCGGGGAAAGAACAAGTCCATCGAATGTTTGATGTTTGCATGCAGTTTTTTCGAGCCGAACAGAAGGCAGAATCTGTTACAAGCTATTTTATGAGATTTAAGAAGATAGCCGCTGAACTTGCCTTATTATTACCTTTCAGCCCTGATATCAAAGTTCAACAAGCTCAACGAGAAAAGATGGCTGTTATGATATATTTGAATGGGCTTTCACCTGAATTTGGCATGGCTAAAACACAGATTCTATCTGATTCTGACATTCCATCGCTAGATGACACCTTTAGTCGTGTTCTTCGTATTGAGAGTTCTCAATCTGGTTCGTCCGTGTCTCAACCGAGCAGTGCTCTTATAAGCAAGAATGATCACCCTCGAGCTACTTTAGGGATGCATAACAATTTTTAGAAGCCTACCTATGATAGTCGGAAATCAGATTCTCAGGAGATCGTCTGTCATTACTGTCGTAAGCCAGACCATCTGAAACGTGATTGTCGAAAGCTGCTGTATAAGACTCAGAGATCTCAGCATGCACAGATAGCTTCCACCACTGATATGCCTGAGAAGTCTGTTACCATCTCCGCTGAAGACTTAGCTAAATTCCAAGTATTCTAGGAATCCCTACCGGCATCTTCTTCATCGACTCCTATTGCCACCATTGCTGAGACAGGTAATACAAAATGTCTCCTTACATCATCTACCAAATGGATCATAGACTCTGGTGCCACTGCTCATATGACAGTTAATTCTAACTTGTTTTCTAGTCCTTTGTCCCCTACCTCATCCCCATCTGTTACCTTGGCAGATGGCTCAACCTCTTCTGTCCTTGGCTCCGGCACCGTTAATCTCACTTCTTCCCTCTCTTTGTCCTCTGTGTTACATTTGCCTCAATTGTCTTTTAATTTAATGCAAGAAATTGCAAGAAGTCCAATTATAATCCAGTTTTTGAACAACACCATCCTCCTCATAGACCTTTTCTTCAAAATGTGGTTGGGTTTGATTCTAAAACATCAAAAGAAGAAGAAGTTAGTTGGCAAGGGTTTTCTCGAGTTTCATATGAAAATCATGAGCAACAACATCAATTCAAGAATGTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAACGAACATTCAACCAAATGTTCAAGAACATGTTGTTGCCCTTCAAGAACATCAAGGCAACCCACATCAAGTCCAAAATTGAGTGGCCTTGCGGCAAGAACATCAAGTTAGGAGTACAAATCTTAATGTTTTAGGTCGTTATTTGACTGCTCCCAGTGAAACCAATTTTGACCGTTGTTGCTCGTCCCAATGTGAAAGACCCTTTTCTAACACCACTTAAGAAGAAGGATGTTGTACAATTAGTGGAGGCTATTGATTCACTAAGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGGAAGAACTTTCTTTCTGTACAATCAGTGAAAGCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGGCTTGGTCAATGGGTATTTGAACACCTACAATGCTTGGAGTCTTGATGAACTTGATGAAAATTTGTCTCTCAAATCAGGTATATTGTCTCTCAAATCTTTCCTCCAAAGTCAATTTCATACTAAAGACTTGGGAGTGCTAAAGTACTTCTTACGTATTTAAGTAATGAGAAGCAATAAGTGTATTTTTATGTCACAAAGAAAATATGTGTTCGATTGCTATCTGAGATAGGAAAATTGTGAGCCAAGCCATGCAGTACTCCGATGATGCCTAGTCTGCAACTTTTAAAAGACGGAGAACCATTTAAAGATTTGTTTTAAAGTTGAATTACCTTACAGTAACATGACTGGACATAGCTTATTTTGTAAGCATCGTGAGTTAGTTTATGAGCTCACCCACAGTGGATCACTGGGCTGCAGTACAACAAATTCTATGTTATTAAAGGCTATACCTGGATGTCGGATCTTATATAAAGATCATGGTCATATGAAGAATGAATGCTTTTCAGATGCCAATTGGGCAGGATCAAAAGATGACAGAAGATCGACTTCTGGCTATTGTGTTTTTGTTGGAGGCAATTTGGTTTCGTGGAAAAGTAAGAAGCAAAACATAGTCTCACGATCAAGTGTTGAATCAAAATACAGAGCTATGACACAATCGGTTTGTGAAATAATGTGGTTACATCAACTCTTGATCGAGTTAGGCTTCAATACTACAGTTCCAACTAAATTGTGGTGTGACAATCACGTATTTCATGAGCATAATAAACATAGTCATTTTGTTTAGGAAAAAAATTCAACAAGGTTTGGTGTCTATTGGATACGTGAAGACTGGAGAACAATTAGGAGACATTTTCACGAAATCTTTAAATGGAGTTTGAATAGAGTATCTATGTAATAAGCTGGGCATGATTAACATATATGCTCCAGCTTGAGGGAAGTGTTATAGTATATATGTAATTATAGGAGCTTTTAATCTTTTGTCGTCTATTGTAATTATTATTCTTAGTTTAGGGTTTCCATGTATGCCTATATATATTCAACTCTAATGTATAGAGTGATGATTAAGTTCTCTCATATTAAGTCTAACATTATCATAAACCAATACGACTAGATGGAAACCATAAAGAAAAACTGTTATATGAGCAATCTGGATCCAGAAAATCGGCATTAGACAAAAAACAAAAAATGAATTGAAAGATATATCTTGCCAACTAATTCTTTCAGGAAAGAGATAACATGGAGATAAAAGAGAGTTTGAAGCACAGAAGAAAGAACTAAAGAAATAAGTTATATATACACTATTAGTCAGTATATCACAGTATAACATCGTATGCAACCTCCAGGGAAGCCCCAGTACTTTCCAAATTTGATCTAGTATTCCATTGGCTCGAGTTATCCAGACAACTCCTAAAATGACCTTTTTGTACAACTAACTACTAAGCTAATAATGTTGGTTATAAACATATTAATTAAGTGCAACAATTTTATTCCATTCTTATTCTTCTTTTCTTTGTATGGAGCCTAAGAAGTATGGACAAGGATACGAGACACCGATACGACACGACACGGACACGTCGACACGCCATATTTTAAATACCTAGGACACGACACGGCAAGGACACGTTTATTAAAATATACATTTTTAAAAATATATATCATTTTCATACCAAAATATGATGCATTTATATGCTTAAAAGACTTGCCTTGATGTATTTCACACTCAAAAGTTATTATTATTGTCATATATGTGTCTTTTTAGTGTCTAACACATTTGTTGCACTAACAAATGTTTGATGCGTGTCCAACAAGTGTCGAAGTGTCGGAGTGTCGGACACGTGTCGGACACGGACACACTAGCCAAACTAATGAAGCTTTTCTCCTCTATAAAAAGGCTATGTATTTTACAACTGAATCATTGGAATACAAAGATATTTATTCCATCTAAATTGAGAAATAACTATTTAATATTTTATACAGTCACTTGCCTATTGATTTCATGGTTAGTTGAAAATTTTGTTTCTGTATTGCAACCGCCAACTTGATCACAGTAGTTCATGTCACCAGCTTTCTTAGGCTCTCACAATAGGGATTACAGCCAATAAAAAGCTTACCTTATATATCTCATGAAAAAGTTGCCTTGAGTAATGCCTAATAAGAATCTCTTGAATGGATTCCCAACTGGCCATGTGATGCGCAATACTCAGGCGCCTGAGATGAATCTGAGCTCCTTCGATGTCCCCGAGAGCCAAAAGACCTCTCTGTAATTGGATGTTCATCAAGTATGACAGATTGCAACAACTGGAAGCTAAGCAAAATCTAATCTCTTTTCCATGCAAACAGAATTATGAATGAAGTACAACACATTTATATATTTTTTTTCTATTTGTTTCGGGCTTGTTCGAGTTTAAGTCTTTTGGAATATAGGTTTCTCTTGAGTTATGTGTTTAATTGGTTTGTTTACTTTTTCTCAAGAGTTTTAGTCTTTATGATGTAATTTGGTTCTAGCCTTGTATTGGCTGAAGTTTTAACTTTGTTTCCTCTCATGTATTTTGAGCATTAGACTCTTTCATTATATCAATGAATAGTCTTGTTCCTGTTTCCAAAAAAAAAAAAAAAAAGATGGCATGAATGGGAGGACTTGTCTGTATGTTTCATACATTTTTTAAATTCAGGATAAAATGGCCATTCACATTTTTATGTTCATTTCCCCCACGAAATAAATTTCACAGCAATGCATGAATTTTAGGCCTTTTAGGCCTTCTAAACCAACCCAGAAATATGGCTTTGTGAGCTAAATGGGGGTGGCGATTATGAATGAATCACATTATTTTTTCTTTTTTTTGGAAAGTCATTATCAGCATTCATGATTCTGGGGTTTTTGGTTGGAATTCTGCTTCAAGAACTTACTCGAGTCTTCAAAGCCCTTGGATGAATATCTCAAAACTTTGGAACCAATTTGATGCCCTTGCTCATTTCAAATTGGGCAATGGCAGCAGAATTATGTTTTGGGATGATATTTGGTTAGTAACTTCTTTGAAAACTTCTTGCTATGTGCTCATCTCCTAATGGAACTGTTTCAGATCATTGGGATGCTATAATTGGTTCTTGGCATATCCCTTTTTGTCGACTCTTAAAGGACGAAGAAATACTCGAATTTCAATCATTAATATCCTCAGTTTCAGCCGTTTCTATTGGGCAAAATGATGATTCTAGACTTTGGTCTCTTGAACCTCCAGGTATTTTTTCGGTTAAATCTTTAACCAAGCATTTGGTATCTTCTTTGCCAATGGATAAAAAGGAATACTCAATCCTTTGGAAGTCCAAAAGTCCAAAATGGCTCAATATTTATATATGGATTATGTTGAATGGCAACCTTAATACTTGAAAGGTGTTGCAAAAGAAGAATCCCAAGAGGTTCTTAATGCCATCTTGCTGCTTTTGCCTTGTGGCCGAGGAAACTCTTCATATATTCTTTTGATTGTTCCTATGCTAGTCAGATTTGGGCACGATTGTTTGCATTCAAAATCCATTGGGTATTCTCAATTACTTTCAGAAATAATGTTTCAACCTTGCACACCGGAAATGTGCTACACTCCAAAGCCAATTTGCTTTGGATAAACGCAGTTAAGCAATTCTTTTAGAACTTTGGATGGAAAATAATTAACATATCTTCCACAATAAACTTTTACCAGAGTTTGAACGTTTTGAATTAGCATGTTTGAAGTCCTCTACTTGGTGCTTACTTTCCAAATTATTTGGGGGTTCTTCTATTCAAGCCCTTTGTCTTGATTGGCATGCCTTTATTTCTCTTAATTGATCTTTGTTCTTATTCGTTTTTTATGTCCTTTTTTTTTTTATAATTTTTTCACTCCTTTTTGGGGTTTGTATCTTTGAGCATAGTTTTAATTCCCTGGTTTAAAAAGAAAAAACCAAGTGGCTGAACTTATTGGAAATTATTACTTTTCCCTGGTTTAAAAAGAAAAAACCAAGTACAGTGGCTGAACTTGATATGTACAACTTTGGTTTTGTTATCTTTTGGAAATTATTATTTAGCTCATGGCATCAACATATTGTTCCTTCAAATAATAAATAGCTAAGTTAAAGATGGTCAAGTTTTGTAACTGTTAAAGTGTTGAGATATTTAACTTCAACATAACCCATCAGCTTACGCTTTTAGGTTGATACCATAGTAGGAGGTCCTGTGTTCAAACCCCTGTAATGTCATCTTTCTAATCAATATTGATTTCCACTTGTTGGGTCTTCTACCCACGAGTGAAGGGAGTGTTAAAATGTCGATATAATTAAATTTACCATGATCCATCGGCTTAAGTGGGTTGATGGGTGATTTAACAGTAACAATATTGAAAGAGAACACAAATACTTACATGCATCAGTAATTCACCAGATGTGAGGATAGGGTTCTTGAGCACCCATGGAATGGTGGAAAAGCTAAGGCCAAGACGAACCTTCGTTAGGATAGATAGCAGAGGAAAGCAAAATACAAAATAATGTTTCGTATGATGTCTATACCTTACTGTCAACTTAATAGGTGCCAAATCAAACAATTCAACGTAAACTTTCTTTTGCTGTCTTGCTAAGAGATAAACCTGCTGCCAAGGAGCTCCAATAGGAACTACCGAAGGTAATAATGTGCTGTCTCTATCAAGTCCATAAAAAAAGGGATATTCTGAAAAATGAAGAGGTTTTGTCCTCCGACTGAAGTAGTCATGAGCTGGATCATTTGCAGGAGGATGCAACATGGCATCTGAAAATTGAGACACTTCACCCTTTAAATTTGACGAGACATTTTTGAAAAACTCAAATACGCTTAACATCACTTGTTGCTCAATCTCAAGTCGAAAATCTGATATTCTGCAAGAATTGAAGAGGAAAGGATCAGTATTATGCATTTTATACTACTAAAACACATTAGATTTCAGAATGGAGACCTTAAGCATATATGTTCAAATGAAACCAGTAAACTATCTGTCTTTTTCCACTTTGATGCGTAAAGATAGAATACAGGTTCAAGAGAGCCATCAGCTTGCAGAACGCTTTCACTTCTTGTTACTGCACCAATATCCTTGTTCAAGCTACCGGTTGGGTTGCTTCTGTATTCTTTATCAAAAGACAAGATAACAGGAAATGGACTATTCCGAAATTGATTATCTATCTGAAGAGATAG

mRNA sequence

ATGAAGGTTGGCTCGGTTGTTCTTTATTTCAGTGGAAGGGATCTGTATGCTGTGATCGTTCTTATTTACCCAAGAGTTGGCTCGATCTGCATAGAAATTTCCATTGTTCAAGGCTTGCCTTTTGTTGATAAATTGGCTAATCTACACTCTATTGAGTTTGAATTTGGATCTGTGAAACCAATTTTGACCGTTGTTGCTCGTCCCAATGTGAAAGACCCTTTTCTAACACCACTTAAGAAGAAGGATGTTGTACAATTAGTGGAGGCTATTGATTCACTAAGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGGAAGAACTTTCTTTCTGTACAATCAGTGAAAGCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGGCTTGGTCAATGGTATAACATCGTATGCAACCTCCAGGGAAGCCCCAGTACTTTCCAAATTTGATCTAAATCTCTTGAATGGATTCCCAACTGGCCATGTGATGCGCAATACTCAGGCGCCTGAGATGAATCTGAGCTCCTTCGATGTCCCCGAGAGCCAAAAGACCTCTCTGTTCAAGAGAGCCATCAGCTTGCAGAACGCTTTCACTTCTTGTTACTGCACCAATATCCTTGTTCAAGCTACCGGTTGGGTTGCTTCTGTATTCTTTATCAAAAGACAAGATAACAGGAAATGGACTATTCCGAAATTGATTATCTATCTGAAGAGATAG

Coding sequence (CDS)

ATGAAGGTTGGCTCGGTTGTTCTTTATTTCAGTGGAAGGGATCTGTATGCTGTGATCGTTCTTATTTACCCAAGAGTTGGCTCGATCTGCATAGAAATTTCCATTGTTCAAGGCTTGCCTTTTGTTGATAAATTGGCTAATCTACACTCTATTGAGTTTGAATTTGGATCTGTGAAACCAATTTTGACCGTTGTTGCTCGTCCCAATGTGAAAGACCCTTTTCTAACACCACTTAAGAAGAAGGATGTTGTACAATTAGTGGAGGCTATTGATTCACTAAGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGGAAGAACTTTCTTTCTGTACAATCAGTGAAAGCTATTGATTCACTAAGGAAGGAGTTCTTTTCTTTGCTTAAAGATATTGGCTTGGTCAATGGTATAACATCGTATGCAACCTCCAGGGAAGCCCCAGTACTTTCCAAATTTGATCTAAATCTCTTGAATGGATTCCCAACTGGCCATGTGATGCGCAATACTCAGGCGCCTGAGATGAATCTGAGCTCCTTCGATGTCCCCGAGAGCCAAAAGACCTCTCTGTTCAAGAGAGCCATCAGCTTGCAGAACGCTTTCACTTCTTGTTACTGCACCAATATCCTTGTTCAAGCTACCGGTTGGGTTGCTTCTGTATTCTTTATCAAAAGACAAGATAACAGGAAATGGACTATTCCGAAATTGATTATCTATCTGAAGAGATAG

Protein sequence

MKVGSVVLYFSGRDLYAVIVLIYPRVGSICIEISIVQGLPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITSYATSREAPVLSKFDLNLLNGFPTGHVMRNTQAPEMNLSSFDVPESQKTSLFKRAISLQNAFTSCYCTNILVQATGWVASVFFIKRQDNRKWTIPKLIIYLKR
Homology
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BLAST of Lsi06G006790 vs. Swiss-Prot
Match: DEXH5_ARATH (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana GN=At2g01130 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +    G + PILTV A  +V+DPFLTP  KKD+ +             
Sbjct: 707 LPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDH 766

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITSY 147
             LV A +  +K  E++   YD  WKNFLS+QS++AIDSLRKEFFSLLKD GL++G  S 
Sbjct: 767 LALVRAYEGWKKAEEES-AVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSI 826

[Close]
BLAST of Lsi06G006790 vs. Swiss-Prot
Match: DEXH3_ARATH (DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana GN=At1g48650 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-15
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---- 98
           LP   KL  +  +   F  + P++TVVA  +V+DPFL P  KKD+ +   +  S R    
Sbjct: 787 LPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRDYSD 846

Query: 99  -----------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGI 141
                      K+ E+   GYD  WKNFLS Q++KA+DS+RK+FF+LLK+  L++ I
Sbjct: 847 HLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLIDNI 903

[Close]
BLAST of Lsi06G006790 vs. TrEMBL
Match: A0A0A0KWI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611030 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDS 98
           LP   KL  +  +   F  + PI+TVVA  +V+DPFLTPL+KKD  +  ++       D 
Sbjct: 761 LPMEPKLGKMLIVGAIFNCLDPIMTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDH 820

Query: 99  LR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNG 140
           L         KE E+N+GGYD  WKNFLS+QS+KAIDSLRKEFFSLL+D GLV+G
Sbjct: 821 LAIIRAYGAWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDG 875

[Close]
BLAST of Lsi06G006790 vs. TrEMBL
Match: A0A067KT31_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +   F  + PILT+VA  +V+DPFLTPL KKD+ +             
Sbjct: 789 LPVEPKLGKMLILGSIFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKSQFSRDYSDH 848

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITS 143
             LV+A +   K+ E++F GYD  WKNF+SVQS+KAIDSLRKEFFSLLKD GLV+  T+
Sbjct: 849 LALVQAYEGW-KDAERDFAGYDYCWKNFISVQSMKAIDSLRKEFFSLLKDAGLVDSNTT 906

[Close]
BLAST of Lsi06G006790 vs. TrEMBL
Match: B9SJY8_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0577590 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-19
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 40  PFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ-------------- 99
           P   KL  +  +   F  + P+LT+VA  +V+DPFLTP+ KKD+ +              
Sbjct: 767 PMQPKLGKMLILGAIFNCLDPVLTIVAGLSVRDPFLTPMDKKDLAEAAKSQFSCDYSDHL 826

Query: 100 -LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITSYA 147
            LV A +   K+ E+NF GYD  WKNFLS+QS+KAIDSLRKEF SLLKD GLV+G  ++ 
Sbjct: 827 ALVRAYEGW-KDAERNFAGYDYCWKNFLSMQSMKAIDSLRKEFLSLLKDAGLVDGSITFC 886

[Close]
BLAST of Lsi06G006790 vs. TrEMBL
Match: A0A0K9RKB9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056430 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +   F  + P+LT+VA  +V+DPFLTP+ KKD+ +             
Sbjct: 820 LPMEPKLGKMLVLGAIFCCLDPVLTIVAGLSVRDPFLTPMDKKDLAEAAKAQFSRDFSDH 879

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVN 139
             LV A D   K  EK +GGYD  WKNFLS+QS+KAIDSLR+EF++LLKD GLV+
Sbjct: 880 LALVRAYDGW-KSAEKEYGGYDYCWKNFLSIQSMKAIDSLRREFYTLLKDTGLVD 933

[Close]
BLAST of Lsi06G006790 vs. TrEMBL
Match: A0A0K9RK99_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056430 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +   F  + P+LT+VA  +V+DPFLTP+ KKD+ +             
Sbjct: 818 LPMEPKLGKMLVLGAIFCCLDPVLTIVAGLSVRDPFLTPMDKKDLAEAAKAQFSRDFSDH 877

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVN 139
             LV A D   K  EK +GGYD  WKNFLS+QS+KAIDSLR+EF++LLKD GLV+
Sbjct: 878 LALVRAYDGW-KSAEKEYGGYDYCWKNFLSIQSMKAIDSLRREFYTLLKDTGLVD 931

[Close]
BLAST of Lsi06G006790 vs. TAIR10
Match: AT2G01130.1 (AT2G01130.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +    G + PILTV A  +V+DPFLTP  KKD+ +             
Sbjct: 707 LPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDH 766

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITSY 147
             LV A +  +K  E++   YD  WKNFLS+QS++AIDSLRKEFFSLLKD GL++G  S 
Sbjct: 767 LALVRAYEGWKKAEEES-AVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSI 826

[Close]
BLAST of Lsi06G006790 vs. TAIR10
Match: AT1G48650.2 (AT1G48650.2 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 84.7 bits (208), Expect = 8.4e-17
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEAIDSLR---- 98
           LP   KL  +  +   F  + P++TVVA  +V+DPFL P  KKD+ +   +  S R    
Sbjct: 787 LPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRDYSD 846

Query: 99  -----------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGI 141
                      K+ E+   GYD  WKNFLS Q++KA+DS+RK+FF+LLK+  L++ I
Sbjct: 847 HLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLIDNI 903

[Close]
BLAST of Lsi06G006790 vs. TAIR10
Match: AT5G04895.1 (AT5G04895.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDV--------------- 98
           LP   KL  +  +   F    PILT+V+  +V+DPFL P  KKD+               
Sbjct: 748 LPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRDPFLLPQDKKDLALSAKLRFSAKDYSD 807

Query: 99  -VQLVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVN 139
            + LV A +   K+ E+    Y+  W+NFLS Q+++AI SLRK+F  +LK+ GLV+
Sbjct: 808 HMALVRAFEGW-KDAEREGSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVH 862

[Close]
BLAST of Lsi06G006790 vs. NCBI nr
Match: gi|659091639|ref|XP_008446652.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDS 98
           LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D 
Sbjct: 813 LPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDH 872

Query: 99  LR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNG 140
           L         KE E+N+GGYD  WKNFLS+QS+KAIDSLRKEFFSLL+D GLV+G
Sbjct: 873 LAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDG 927

[Close]
BLAST of Lsi06G006790 vs. NCBI nr
Match: gi|659091641|ref|XP_008446653.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDS 98
           LP   KL  +  +   F  + PILTVVA  +V+DPFLTPL+KKD  +  ++       D 
Sbjct: 813 LPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDH 872

Query: 99  LR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNG 140
           L         KE E+N+GGYD  WKNFLS+QS+KAIDSLRKEFFSLL+D GLV+G
Sbjct: 873 LAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDG 927

[Close]
BLAST of Lsi06G006790 vs. NCBI nr
Match: gi|778706098|ref|XP_011655799.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQLVEA------IDS 98
           LP   KL  +  +   F  + PI+TVVA  +V+DPFLTPL+KKD  +  ++       D 
Sbjct: 761 LPMEPKLGKMLIVGAIFNCLDPIMTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDH 820

Query: 99  LR--------KEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNG 140
           L         KE E+N+GGYD  WKNFLS+QS+KAIDSLRKEFFSLL+D GLV+G
Sbjct: 821 LAIIRAYGAWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDG 875

[Close]
BLAST of Lsi06G006790 vs. NCBI nr
Match: gi|643726196|gb|KDP35004.1| (hypothetical protein JCGZ_09292 [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +   F  + PILT+VA  +V+DPFLTPL KKD+ +             
Sbjct: 789 LPVEPKLGKMLILGSIFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKSQFSRDYSDH 848

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITS 143
             LV+A +   K+ E++F GYD  WKNF+SVQS+KAIDSLRKEFFSLLKD GLV+  T+
Sbjct: 849 LALVQAYEGW-KDAERDFAGYDYCWKNFISVQSMKAIDSLRKEFFSLLKDAGLVDSNTT 906

[Close]
BLAST of Lsi06G006790 vs. NCBI nr
Match: gi|802620772|ref|XP_012075701.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1 

Query: 39  LPFVDKLANLHSIEFEFGSVKPILTVVARPNVKDPFLTPLKKKDVVQ------------- 98
           LP   KL  +  +   F  + PILT+VA  +V+DPFLTPL KKD+ +             
Sbjct: 823 LPVEPKLGKMLILGSIFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKSQFSRDYSDH 882

Query: 99  --LVEAIDSLRKEVEKNFGGYDIYWKNFLSVQSVKAIDSLRKEFFSLLKDIGLVNGITS 143
             LV+A +   K+ E++F GYD  WKNF+SVQS+KAIDSLRKEFFSLLKD GLV+  T+
Sbjct: 883 LALVQAYEGW-KDAERDFAGYDYCWKNFISVQSMKAIDSLRKEFFSLLKDAGLVDSNTT 940

The following BLAST results are available for this feature:
BLAST of Lsi06G006790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH5_ARATH1.9e-1845.53DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana... [more]
DEXH3_ARATH1.5e-1539.32DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana GN=At1g48650 P... [more]
BLAST of Lsi06G006790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWI1_CUCSA1.4e-2051.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611030 PE=4 SV=1[more]
A0A067KT31_JATCU2.7e-1949.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1[more]
B9SJY8_RICCO7.7e-1945.90ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0577590 PE=4 SV... [more]
A0A0K9RKB9_SPIOL5.0e-1847.83Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056430 PE=4 SV=1[more]
A0A0K9RK99_SPIOL5.0e-1847.83Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056430 PE=4 SV=1[more]
BLAST of Lsi06G006790 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01130.11.1e-1945.53 DEA(D/H)-box RNA helicase family protein[more]
AT1G48650.28.4e-1739.32 DEA(D/H)-box RNA helicase family protein[more]
AT5G04895.13.7e-1237.07 DEA(D/H)-box RNA helicase family protein[more]
BLAST of Lsi06G006790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091639|ref|XP_008446652.1|1.2e-2052.17PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Cucumis melo][more]
gi|659091641|ref|XP_008446653.1|1.2e-2052.17PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|778706098|ref|XP_011655799.1|2.0e-2051.30PREDICTED: ATP-dependent RNA helicase DHX36 [Cucumis sativus][more]
gi|643726196|gb|KDP35004.1|3.8e-1949.58hypothetical protein JCGZ_09292 [Jatropha curcas][more]
gi|802620772|ref|XP_012075701.1|3.8e-1949.58PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006790.1Lsi06G006790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 55..141
score: 9.4
NoneNo IPR availablePANTHERPTHR18934:SF146DEA(D/H)-BOX RNA HELICASE FAMILY PROTEINcoord: 55..141
score: 9.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G006790Cucumber (Gy14) v1cgylsiB573
Lsi06G006790Cucurbita maxima (Rimu)cmalsiB073
Lsi06G006790Cucurbita maxima (Rimu)cmalsiB128
Lsi06G006790Cucurbita moschata (Rifu)cmolsiB059
Lsi06G006790Cucurbita moschata (Rifu)cmolsiB118
Lsi06G006790Cucurbita pepo (Zucchini)cpelsiB017
Lsi06G006790Cucurbita pepo (Zucchini)cpelsiB299
Lsi06G006790Wild cucumber (PI 183967)cpilsiB059
Lsi06G006790Cucumber (Chinese Long) v2culsiB058
Lsi06G006790Melon (DHL92) v3.5.1lsimeB398
Lsi06G006790Watermelon (Charleston Gray)lsiwcgB361
Lsi06G006790Watermelon (97103) v1lsiwmB391
Lsi06G006790Cucumber (Gy14) v2cgyblsiB055
Lsi06G006790Melon (DHL92) v3.6.1lsimedB420
Lsi06G006790Silver-seed gourdcarlsiB485
Lsi06G006790Silver-seed gourdcarlsiB886
Lsi06G006790Cucumber (Chinese Long) v3cuclsiB068
Lsi06G006790Watermelon (97103) v2lsiwmbB362
Lsi06G006790Wax gourdlsiwgoB511
Lsi06G006790Wax gourdlsiwgoB521