Lsi06G006670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	U4/U6.U5 tri-snRNP-associated 1
Location	chr06 : 10242713 .. 10246903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCGTACAACATCGAACAATCCACTAAACAATCCACGAAGTTTATGTTGGAAAGGTATTATCCAGTGCACTGAAGCTGCTTAAAGATCGAACACTAGTACAAAACTGGGCTTTAATGTCGGTTTAAAACAGACATTATAGGGGCACAATGTCAGTTGACAACTGACATCGAAGATCGTGTTTTAAAAGGTCTTTGATGTCGGTTGTCTTTAATGTCGGTTTTAAACCGACATTATAGGTGACTAAGATTTCAATGCTAATTATCTTTAATGTCGATTTTCAACCGACATTGAACACCATTTTAAATTTCGGTTTTTACCTACTTTTTCTTGACAATTGTCCGACATTAAATGTTTGTCATTGTTTTTTTATTAAAAAAAATTTTCCTACGCACATGCAAATCAATAAGATTTCTCTTTTACCTATACATGCACAAAATAAAAATCTTAATTGCTTTCACAAATCCCCAATAAGTCACAAAAGAGGAATTTGATGATAATTTAACTCCAAAACCAAGATAAAATATATTTTTCATTCAAATCAACTCCATATGGTTTAGACAACAAATTCCTACGTATCAACCTTGAAGTATACATATATATTCTACATGGAATAAGTAGAGTGTACATGTTAAGCTGTACACAAGAATAGAATTCAAAATAAATTAATTACAAAATGGTTAAAATGACTAAAAATAAGCTGAAGATAAAAGAAGAGTGTTTAATGATGCCTTCTCAAGTTTCTCTGATGTCAATTTTTGGAATCTAGGGACTATTCTCCCACCTACAAAGTAGATAAAACAACAATTTGAACAAATAAGTAAAAAACAAAACATAATCAAAATAACTTAAATATGAACAAGAGATTTTATATCAAGCTAATATCTAATAATACTAAATCTTACCGATCCAACTAGCAACGAAAATACCAATAGCAATATAAACAACTCTAAAAGCAACTTGCAAAGAAATGAAGCATTTCTCGCTAATTCTTACATAGACATTCCTAGCATTACTGTTAAAAAATTATTGTGTTTGAGTATGTTGGCAAAGTTGCAATGGAAGGAAAATAATAAAAAATAAGACAAGGCACTTCAAGTCATGCCTATTCCCATTGTTTCAACAAATGGAAGGATGAATATTAATGAAAGAGAAAGGCATGTAATGTTGAGAGAAAGGAGGAAGGGTAGAGAGATTTACAAACCCAAACAAGTAAGCTTATCAAAACTAGAAGAAAAGACTAATAGCAACCTAATTCATTTGGACAAATGCATAAACATAAACAAAAACAAGAACTTGCAAACAACTAGATACAATCAACTCAATGAAAACAAAAAATAACTAAATTATGACTACCATAACTGCAGGATAGTCATAACACTCTAACACTTATTCTAATTCAACACTTTAAAATAATATAGAGTTTTAAGCAAAATGTCTTATAAATATTACCTTGTAAAATATGCATCATGGTAGTTTGAACTCCGCTTGCTTACTATGCTCTTAAAATAATTGGAAGATCTACTAGACAACATGAACAAGATTTTAGAGTTTTTAGTATAAGTATTACCTTATAAAAATGTGGCATGGTAGTTCGAACTCCACTTGCTTACTTTGTTCCTAAAAACAAACCCAAGATTTCCTAGACAATACTAATAAGGTTTTAGAGGCCAAACTTTAGTTGTAAAATCTTAATCGAATTAAAATAATGTCCAAGGGAGATGTTATTACCTTAACAAAACCTCAAAAATTAATTTGAGCACTCCTAATTAGTTTCAAACTACAAACATAGAGTTACCAAGGATTATAAACAAATATGCAACACTTAGTTGAACTTGGAAGCTAGGATTTAAACAAAGTTTTGAACACATAAAACTTACCAAAAATGACTTAAGCCCTAGCTTAAAAGTGTTTGAAGGAGGCCAAAACTAATTCAAAGCTACAAACAAAAGCTTAAGTGTTAGGGACAATTATAACACACCTTAAAAAGAGTTTAAAAGGATCTAAACAAAGTTATTACCCACCAAACTACCAAAATGGCCCAAATTCTAAATCATTATCCAAACACAACAATCTCTTTTTGGCTTGAGAAATCTTGAATCAAATTCTAAATCATGAAGAAAATTAATTAACTTCAACATTAAGGGTCTTATTCCAAATAATAATTTCAACTAAAGAGGCTCCAAACAACCACAACTAAATTTCTTTCATTTTCTACCCAACCAAATATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAGAGACTAGACAAGTGATGAATCACAAAACACTAGATGAAAATTTCTTGCAAATTATAGCTTCTAATGTGGTTTTAAAGGGCAAACTTTTATCAAACATCCACAACGGCGACAAAACGAATCCACACAAAGAGAATGAAAACCCATAAAATTTTCACCTTTGATTCAGATCCTTTGGATCTGACGAACAAATCGACGATCTGATGAAGGAATCGACGATCTAATGCACGACTCACAGCAGCGGGTTGAACATGAGTTGAATGACGCCAGCAACGACGGCGAGCTACATGACTAGCTGAATGATGCCAACGACGAACTGAACACAAGCTAAATGACGCCAAACCTGCACGACAAATGGATTGAACGAACTTGATCGACGGAGAAATGAAGACAATGGAAGGTGAAGGTTTGGAGGAGAGAAGTGAGAAAGGAGAGAGGAGAAAGTTAGAGAAATGAAAGAGATTCAAAAGAGGAGTTTTTTTTCTTTTTCTTTTACTAAAAAAATAGAAAATATATATTATTTTTCATTTTTTAATTGATAATTTGAAAAGGAGGAAAACAAAATTTAGGAGGGAAATGAAAATGGGGAAAGGAGGGAAAGAAAAAATGAAAATTAACAGATTGTGTGAGATTAAAAAAAGAAAAGCGGATCTTTAATGTTGGTTTTAAACTGACATTATAGGTAAGCCTACAATGTCGGTTTAAAACCAACATTAAAGATTTACTTTTTTTTTATAAAGAAATCGACATTGTACATCTGTTTTTAAAATTTTCAACCGACATCAAAGCCCAGATTTCTTGTAGTGGAGGAATTGTGAAGGAAAGCATTGTCTGGGGCGATAGAAACATGGACAAGAGAAAGAGCAAACTTGTTGGTATAGTAGATGAAGATGAATCGAAGGAATCTAAGTCGAAGGATTCTCGTTTATCTTATCTGGTTGATTACAAAAAGGAGATCCACATTGAGAGGATTCATGAATTGGGGTGTATTGTAAGTTTGCTTGACTCTATAATTTACTTAGCCAAGTCATTTATATTTAGTTTACTTCCATCACATATTCACTTGCTGCTTTTAGTTTTAAGGGCCCTAGTCTTTGTGCCTCCTGATGATGCATCATGCATGGTAGATCTTTGTTTCTAGTTGGGTTTAGAGATAGGGTGGCAAAAGAGTAGTATAAATTTAGCCGAAGACATATGTCAAGGAATGATTGCAAGTTGAGAATGTATTTTTCGTGGCAGACCTAGAATTAGATTTTTTCTGGTAGCGTAACAATGAGACATGTGCGAAGTTAAAAACTTAAAATAGGATTTATTTTTCAAATTTGTAGAATAACAGTTAGGGAAATGTGTTTGTTTACTTCTCAAATTGCCATAACCAAGGCATACTCGTCATTGCTTTTTATCTTGTTATAACAATGAAATGATGCACCCTCCACCAGAAAACAATAATAACAAAGACATTCAAGTCGTTTTAAATATGAGTTTCTCGTTTTTGAGTTGTTGGCATTCTACATGTTTATCTTTATGCTGATTGCGTAGGGCTTTTGCCTATAGTTGTTAAATTTTTGTTTTCTCTCATTCCAATGGATTTTGATTGTAATTTCTGGTGTATCCTTTCCATGGGCGGCTGTAGGATGTGATAATATTCAAATGCTTACAATCAAGGAGAATTTTATTCTCATTTGTGCCTTTTTACTGCACCAGATGACTCCAAAGGAGTCGTTTCGACGACTCTCTCACAAGTTCCATGGGAAGGAACCTGAAAAAATGAAGCAAGAAAAGCTCATCAAACAATACCAAGAAGAGTTGAAGTTGAAGTAGATGAAGAATGTCGATTCTCCTTTGGTATCAGTGAAGAGAATGAGGGAAGCTCAAGCACAATTAAAGACCCCTTATCTTGTTCTCAGTGGCCACGTTAA

mRNA sequence

ATGTATCATGAAGATGAATCGAAGGAATCTAAGTCGAAGGATTCTCGTTTATCTTATCTGGTTGATTACAAAAAGGAGATCCACATTGAGAGGATTCATGAATTGGGGTGTATTATGACTCCAAAGGAGTCGTTTCGACGACTCTCTCACAAGTTCCATGGGAAGGAACCTGAAAAAATGAAGCAAGAAAAGCTCATCAAACAATACCAAGAAGAGTTGAAGTTGAATGAAGAGAATGAGGGAAGCTCAAGCACAATTAAAGACCCCTTATCTTGTTCTCAGTGGCCACGTTAA

Coding sequence (CDS)

ATGTATCATGAAGATGAATCGAAGGAATCTAAGTCGAAGGATTCTCGTTTATCTTATCTGGTTGATTACAAAAAGGAGATCCACATTGAGAGGATTCATGAATTGGGGTGTATTATGACTCCAAAGGAGTCGTTTCGACGACTCTCTCACAAGTTCCATGGGAAGGAACCTGAAAAAATGAAGCAAGAAAAGCTCATCAAACAATACCAAGAAGAGTTGAAGTTGAATGAAGAGAATGAGGGAAGCTCAAGCACAATTAAAGACCCCTTATCTTGTTCTCAGTGGCCACGTTAA

Protein sequence

MYHEDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNEENEGSSSTIKDPLSCSQWPR

Homology

[Close]

BLAST of Lsi06G006670 vs. Swiss-Prot
Match: DOT2_ARATH (SART-1 family protein DOT2 OS=Arabidopsis thaliana GN=DOT2 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQE 63
           +D  KESK K+S+     D  K+I IER  E G  +TPKE+FR LSHKFHGK P KMK+E
Sbjct: 664 DDGGKESKDKESK-----DRFKDIRIERTDEFGRTLTPKEAFRLLSHKFHGKGPGKMKEE 723

Query: 64  KLIKQYQEELKLNE 78
           K +KQYQEELKL +
Sbjct: 724 KRMKQYQEELKLKQ 732

[Close]

BLAST of Lsi06G006670 vs. Swiss-Prot
Match: SNUT1_HUMAN (U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 23  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE 78
           YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Sbjct: 704 YKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKK 758

[Close]

BLAST of Lsi06G006670 vs. Swiss-Prot
Match: SNUT1_MOUSE (U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus GN=Sart1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 23  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE 78
           YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Sbjct: 710 YKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKK 764

[Close]

BLAST of Lsi06G006670 vs. Swiss-Prot
Match: SNUT1_RAT (U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus GN=Sart1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 23  YKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQEELKLNE 78
           YK ++ IE + E G  +TPKE+FR+LSH+FHGK   KMK E+ +K+  EE  L +
Sbjct: 710 YKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKK 764

[Close]

BLAST of Lsi06G006670 vs. TrEMBL
Match: A0A0A0KXY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650610 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQE 63
           EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQE
Sbjct: 780 EDEPKESKSKDSRLSSLVDYKKEIHIERTDEFGRIMTPKESFRQLSHKFHGKGPGKMKQE 839

Query: 64  KLIKQYQEELKLNEENEGSSSTI 87
           K +KQYQEELKL +     + ++
Sbjct: 840 KRMKQYQEELKLKQMKNADTPSL 862

[Close]

BLAST of Lsi06G006670 vs. TrEMBL
Match: A0A0V0IVB4_SOLCH (Putative U4/U6.U5 tri-snRNP-associated protein 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLV-----DYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPE 63
           ED     ++ D + S LV     D KKEIHIER  E G I+TPKE+FR +SHKFHGK P 
Sbjct: 466 EDIEWGGRNMDKKKSKLVGIRSEDGKKEIHIERTDEYGRILTPKEAFRLISHKFHGKGPG 525

Query: 64  KMKQEKLIKQYQEELKLNE 78
           KMKQEK ++QYQEELK+ +
Sbjct: 526 KMKQEKRMRQYQEELKIKQ 544

[Close]

BLAST of Lsi06G006670 vs. TrEMBL
Match: M1ABQ9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLV-----DYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPE 63
           ED     ++ D + S LV     D KKEIHIER  E G I+TPKE+FR +SHKFHGK P 
Sbjct: 715 EDIEWGGRNMDKKKSKLVGIRSEDGKKEIHIERTDEYGRILTPKEAFRLISHKFHGKGPG 774

Query: 64  KMKQEKLIKQYQEELKLNE 78
           KMKQEK ++QYQEELK+ +
Sbjct: 775 KMKQEKRMRQYQEELKIKQ 793

[Close]

BLAST of Lsi06G006670 vs. TrEMBL
Match: M1ABR0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLV-----DYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPE 63
           ED     ++ D + S LV     D KKEIHIER  E G I+TPKE+FR +SHKFHGK P 
Sbjct: 255 EDIEWGGRNMDKKKSKLVGIRSEDGKKEIHIERTDEYGRILTPKEAFRLISHKFHGKGPG 314

Query: 64  KMKQEKLIKQYQEELKLNE 78
           KMKQEK ++QYQEELK+ +
Sbjct: 315 KMKQEKRMRQYQEELKIKQ 333

[Close]

BLAST of Lsi06G006670 vs. TrEMBL
Match: M1ABR1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLV-----DYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPE 63
           ED     ++ D + S LV     D KKEIHIER  E G I+TPKE+FR +SHKFHGK P 
Sbjct: 715 EDIEWGGRNMDKKKSKLVGIRSEDGKKEIHIERTDEYGRILTPKEAFRLISHKFHGKGPG 774

Query: 64  KMKQEKLIKQYQEELKLNE 78
           KMKQEK ++QYQEELK+ +
Sbjct: 775 KMKQEKRMRQYQEELKIKQ 793

[Close]

BLAST of Lsi06G006670 vs. TAIR10
Match: AT5G16780.1 (AT5G16780.1 SART-1 family)

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-15
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQE 63
           +D  KESK K+S+     D  K+I IER  E G  +TPKE+FR LSHKFHGK P KMK+E
Sbjct: 664 DDGGKESKDKESK-----DRFKDIRIERTDEFGRTLTPKEAFRLLSHKFHGKGPGKMKEE 723

Query: 64  KLIKQYQEELKLNE 78
           K +KQYQEELKL +
Sbjct: 724 KRMKQYQEELKLKQ 732

[Close]

BLAST of Lsi06G006670 vs. TAIR10
Match: AT3G14700.1 (AT3G14700.1 SART-1 family)

HSP 1 Score: 56.6 bits (135), Expect = 9.8e-09
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 8   KESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIK 67
           K++  +D R     D  K+I I+R+++ G IMT KE++R L H FHGK P K KQEK  K
Sbjct: 115 KDNNHEDDRFK---DRFKDIQIQRVNKWGRIMTEKEAYRSLCHGFHGKGPGKKKQEKQRK 174

Query: 68  QYQEELKLNEENEGSSSTIKDPLSCSQWP 97
           +++++ K  E +E S   I++  + S+ P
Sbjct: 175 KHEDKSKQMESSERSVERIREIHAISKTP 200

[Close]

BLAST of Lsi06G006670 vs. NCBI nr
Match: gi|778708017|ref|XP_011656108.1| (PREDICTED: SART-1 family protein DOT2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQE 63
           EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQE
Sbjct: 780 EDEPKESKSKDSRLSSLVDYKKEIHIERTDEFGRIMTPKESFRQLSHKFHGKGPGKMKQE 839

Query: 64  KLIKQYQEELKLNEENEGSSSTI 87
           K +KQYQEELKL +     + ++
Sbjct: 840 KRMKQYQEELKLKQMKNADTPSL 862

[Close]

BLAST of Lsi06G006670 vs. NCBI nr
Match: gi|659119412|ref|XP_008459643.1| (PREDICTED: trichohyalin [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQE 63
           EDE KESKSKDSRLS LVDYKKEIHIER  E G IMTPKESFR+LSHKFHGK P KMKQE
Sbjct: 783 EDEPKESKSKDSRLSSLVDYKKEIHIERTDEFGRIMTPKESFRQLSHKFHGKGPGKMKQE 842

Query: 64  KLIKQYQEELKLNEENEGSSSTI 87
           K +KQYQEELKL +     + ++
Sbjct: 843 KRMKQYQEELKLKQMKNADTPSL 865

[Close]

BLAST of Lsi06G006670 vs. NCBI nr
Match: gi|702251401|ref|XP_010062921.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1-like [Eucalyptus grandis])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 11 KSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQ 70
          K K   +    D +KEIHIER  E G I+TPKE+FR LSHKFHGK P KMKQEK +KQYQ
Sbjct: 3  KKKSKLVGIADDGQKEIHIERTDEFGQILTPKEAFRLLSHKFHGKWPGKMKQEKSMKQYQ 62

Query: 71 EELKLNEENEGSSSTI 87
          EELKL +     + ++
Sbjct: 63 EELKLKQMKNSDTPSL 78

[Close]

BLAST of Lsi06G006670 vs. NCBI nr
Match: gi|702288274|ref|XP_010046838.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1-like [Eucalyptus grandis])

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-12
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 11 KSKDSRLSYLVDYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPEKMKQEKLIKQYQ 70
          K K   +    D +KEI IER +E G I+TPKE+FR LSHKFHGK P KMKQEK +KQYQ
Sbjct: 3  KKKSKLVGIADDGQKEIRIERTNEFGRILTPKEAFRLLSHKFHGKGPGKMKQEKRMKQYQ 62

Query: 71 EELKLNEENEGSSSTI 87
          EELKL +     + ++
Sbjct: 63 EELKLKQMKNSDTPSL 78

[Close]

BLAST of Lsi06G006670 vs. NCBI nr
Match: gi|565391955|ref|XP_006361674.1| (PREDICTED: SART-1 family protein DOT2 [Solanum tuberosum])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 4   EDESKESKSKDSRLSYLV-----DYKKEIHIERIHELGCIMTPKESFRRLSHKFHGKEPE 63
           ED     ++ D + S LV     D KKEIHIER  E G I+TPKE+FR +SHKFHGK P 
Sbjct: 715 EDIEWGGRNMDKKKSKLVGIRSEDGKKEIHIERTDEYGRILTPKEAFRLISHKFHGKGPG 774

Query: 64  KMKQEKLIKQYQEELKLNE 78
           KMKQEK ++QYQEELK+ +
Sbjct: 775 KMKQEKRMRQYQEELKIKQ 793

The following BLAST results are available for this feature:

BLAST of Lsi06G006670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOT2_ARATH	1.2e-13	59.46	SART-1 family protein DOT2 OS=Arabidopsis thaliana GN=DOT2 PE=1 SV=1	[more]
SNUT1_HUMAN	1.9e-06	49.09	U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1 PE=1 SV=1	[more]
SNUT1_MOUSE	1.9e-06	49.09	U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus GN=Sart1 PE=1 SV=1	[more]
SNUT1_RAT	1.9e-06	49.09	U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus GN=Sart1 PE=1 SV=1	[more]

BLAST of Lsi06G006670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY6_CUCSA	1.3e-22	73.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650610 PE=4 SV=1	[more]
A0A0V0IVB4_SOLCH	1.1e-11	56.96	Putative U4/U6.U5 tri-snRNP-associated protein 1-like OS=Solanum chacoense PE=4 ...	[more]
M1ABQ9_SOLTU	1.1e-11	56.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1	[more]
M1ABR0_SOLTU	1.1e-11	56.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1	[more]
M1ABR1_SOLTU	1.1e-11	56.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007426 PE=4 SV=1	[more]

BLAST of Lsi06G006670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16780.1	7.0e-15	59.46	SART-1 family	[more]
AT3G14700.1	9.8e-09	39.33	SART-1 family	[more]

BLAST of Lsi06G006670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708017\|ref\|XP_011656108.1\|	1.9e-22	73.49	PREDICTED: SART-1 family protein DOT2 [Cucumis sativus]	[more]
gi\|659119412\|ref\|XP_008459643.1\|	1.9e-22	73.49	PREDICTED: trichohyalin [Cucumis melo]	[more]
gi\|702251401\|ref\|XP_010062921.1\|	2.3e-12	56.58	PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1-like [Eucalyptus grandis]	[more]
gi\|702288274\|ref\|XP_010046838.1\|	8.9e-12	55.26	PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1-like [Eucalyptus grandis]	[more]
gi\|565391955\|ref\|XP_006361674.1\|	1.5e-11	56.96	PREDICTED: SART-1 family protein DOT2 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005011	SNU66/SART1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010588	cotyledon vascular tissue pattern formation
biological_process	GO:0009908	flower development
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0000481	maturation of 5S rRNA
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0048528	post-embryonic root development
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006670.1	Lsi06G006670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005011	SNU66/SART1 family	PFAM	PF03343	SART-1	coord: 7..72 score: 2.7
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR14152	SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES	coord: 4..79 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006670	Silver-seed gourd	carlsiB485
Lsi06G006670	Silver-seed gourd	carlsiB886
Lsi06G006670	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G006670	Wax gourd	lsiwgoB511
Lsi06G006670	Wax gourd	lsiwgoB521
Lsi06G006670	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006670	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006670	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006670	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006670	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006670	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006670	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006670	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006670	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006670	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G006670	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G006670	Watermelon (97103) v1	lsiwmB391
Lsi06G006670	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006670	Melon (DHL92) v3.6.1	lsimedB420