Lsi06G006620 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G006620
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 10135729 .. 10141811 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCATGTGAGAATCTACAGAGCAGATCCCTTTTGTTTGGTTCTACAAAATGGCCTTATTAGGGTTTTAACCCTCTTTTTAAGGGCCCAAATTTAAGCCTCTTGTATGGCTTGCCTTGGTGCAACTTGGGAGAGAAATCAGGTTAAAGAGCACTTTTCAAGTGGGTGCAGTAAGACTATCATAATCTACTTTATTGAAATTTGAAGGGGTTGTTTTAGGGATTGTAATATAATGGATTTGGATGGAGCGTTTTGAGCTCGATTTGTAATATTAAATGCATTCCGTACCAACAGCTTTTAACCAAAACTTTTTTCTACCAATTTCACGTTTCACGATTTTATTTCTGTTGCGTCTTCGATACCTCGCGCATTCCAACACTTTCTTAGTAATCCTGATTACATTCCAGCCTCCCAAACAACTCCTAATTATAATAGTAGCTATTTTCCTTCTAACTATTATAACCTATAATTATAACCAAGACTAGAATAGTCTACATTTTCAAATACAAACTATTATAACCTATAAACTATAATAACCACTAACTATAATAAACAATTCAGCACCCGAAATGCTTCCTTTTAGATCTGAACTTTGATAGAACTAACAAGTTAGGCTTCGTTTGATAACCATTTCATTTTAAAGTTTCTACTTTTACAATTGGTGATTGTTTTCTCTCAATATTCTTATCATAGTTTTCACTTTTCTTAAAGAAACATTTGAATTCTTAATGAAAATCTAAAAGCAAAAAACAAGTTTTTTAGGGCCCGTTTGATAACGTTCCTATTTCTATTTCTAATTTTTCTAGAAACGGACTTGTTTGATAATTATTCCCATTTCTCATTCCGAATTTTAAAGAACGTTCCTGAAAATTGAAGAAATTTTTGGAAACCACAAAAAGTAGTTTTGTCAGTTCTGTTTCTCGCTCGTTCTGTTTCTCCCTTGTTCTATTTCTCCCTTCGTGTTTTAGAGCTACCATCATCTCTTTCTTCTCACCGACAAGCAACGACTCTCTCCTATCAAGCTAACTAGGGCTTCCATTGTCTCCTTCTTTTCGACAATAACATCAGCAACGACTCTCTCCTCTCAAGCTAGAGCGCACACACAGAGGTATATCCATCTTTGAGATTTCTTCCTTCGACTGTATTATGTATCAACTTCATCTTTAATTTTTTTTCTAGGTTTTTGAATTTCAGATTCATTTCCTTTCACACACGAACGCAAAGAGTTTCCATTTAGAAGCAACAGTGTCTCCTTTTCATTGCATTCCCTTTTTAGTCCATATCTCAATCTCCTTTACAATCTTCTTCACATAGAGTTGCTTGTGCTCCCAATCCCGTAGTCTAGATTGCCTCTGTAGTTGAACTTTTAATATGGTGTAGTGAGTGTAGGAATTGAATTCCTAGCGGAAGCGATTTATCACATTGTGGTTTCAATTACTCAATTATGAAACTTAAAGAAACAGAGAAAAAAGAATAAAATAGGATAAACTAGCATGCAATTTAAAGAAGAGAAAACTTAAAGGAAGAAGAAGTTGCTTACCTTGATGAATCTTCTTCACAAAATTCTTCTACAAATGGATAAGGACACTACCACCAAAGAGCACTCACTATTCTCAAGGTTATATCCATGAGAGTGGTCTCAATTTGTCTATTTAAAGGGAGGAAGAAGAAGAAGTTATTTTTTCATTAGAGAGAAATTATGCATAGAGAGAGTTAGTGGAGAGGATTTATGGAGGAAAAAAAAAACTTCACACCATGTTCATCATAACTCCCAAATGGGAGTTATTATTTTCTTTAAGTTAATTTAAATAAACTAATAATATAAATTAAATTAAATTATATATATATTAAATCTTATTTAATAATAATTAGTTACCAATTAACCAAGTTCTCTCACATAACCTATAGTTTAATATGAATCATATTCACATTATTTTTAACCTATAGTTTTATATGAATCTCATTCATATAATATTTAATATTTAATCTTATTCAAATATTTCTCTTATGTAGATTATAAAGTTTAATTTTTACATTTCATATAAAAATCTACTTTCTATTATAATGTATCAATATACATTATTTAATTGTATCTCATACAATTAATTCTCATAACTTAATTTGAACAATTCAAATTAAACCAAGATAACTGACTGTCATCTTAACCTATATGAGCTAGCAAGTGGACCTAATGAACCTATCAGTTTGAAGCTCCAATGGTACAAGATTAATTAATTAAACTCTATAATTAAATTAATCAACATTCATTAACTGTCGGTCATTCCACTAAAGACCGACAACTGCACTCTTCTTACTGTAGATATATTTCTATGTCTACGGATATAATCAATCAATAGCGAGTCGACCCTTCACAAATTGCTCGTAACAACAACTGGATCAAATTACTGTTTTACCCCTGTGTTACCTCTAACTCCTTAAGTACCACTGATCCCTCTAATGAACAATTTAGTCATAGTCCAACTATGAGCTAGACCCCTCTCTGGCCAGTGAAAGGGTGAGGCGCCTCATTGTTCAAGACCTGACATCAACTCTTAAGGGAGCAATTCATAAGACATGAATTCCTTCTTGTACAGTTGAGTTTCCAACTGCCTGCTCGGACAAATCCTCAAAGTGGTAGACTTATTGAGTCCGCAAACCTGGCCACTTTCACCCATACAAATCAAAGGATTGCCCTCACAAGCAGGAGTTCACAACTGACTCAAGATTAAGGTCGAGTCACCTATGATCATCCTAGTGAAATGTAAGCCTCATTAAGTAACGGTGTTAATACGGGAGACTAATCATTTCGCAGTCCGGTCTTATATATATGTCTCACATATATAGGATACCCCCAGTCACATGTCTCCACATGAACATTTAGGATCTAAACGTTTGTGACACTTTACAACACTTGTAACGATCACAAAGTGGGTCGTATCCGTAGTGATACCAAGATAAGGTACCCAACCTTATCCATCTACTACAGATCGTTTAGGTTAGTACTTAAACACGATCCACTTGTATGTCTCTACATACGTGTTTAAGTTACTACTAATAACCTAGGATCTTAGTTTATTGGTTTGGTTATTGGTTTTTGGGTTAGTGTAACTAAATGTCAAAAAAAAAATAACAATTATTTTATTAAATAAATAATTTGATTTGTACAATACAAGTTTACAAAATACAATACCCACGAGATTTAGGGCATCAACCCCAACAGTGAGGAAATAGGAAAAGGGTTGAGAGGATGATAAGAAATTTTGATTTTGGTCTCTTTGAAGTTGTATGCCTTGAATGAAATTTTGATTAATGCTACTGCATATGAGAATATTGCTAATATGATAATGTTCTCTTTTTCTTGTTTTGTTTTATTAGGATGATGTGCATATTTTACCTTGAAGTAGATAATGCTATTGCCAAAAATTAATAATGTCAAACTTAGTCTTAGAGGATTATCCAATGTATTTCAAACTGTTTGCTTTTTATTTAATTGTTTGTTCATTAGTTAGCCTTCTATCTACAAGTTGAGTGGTTCTATTATTTGAGAGTTCTACAATACTTTCTTTTGGAGGGGTGGTGCTTATCGGTCAGTAAAAACAGTGATTTCTTTCTTAATTTTATAACGTAAATGATTTTGTTTTGCATTTGGTTGAGTTTTCATCCTAGGTTTGAGAAATTTTGTGAAGAAACTTCTCATTTTTAATCTTGTTGTCTTACTAAATAGATGTCACAAAAATCATTCGAAAAGCATTATGTTGATGAGATTGTTGAAATTGATGGATTGAAAAGTGAGGGACCATGGTCTGACAAGAATGAGGCTTTATTTGTTGACTTAATGGATGAAGAGGTTGCAAAGGGCAATCGACCAACCACAAAATTTACAAGGGCTAGTTGGAATTATATGAGTAACCAATTAAATACTAGTACTGGATAGCTTATACTCATGATCAATTGAAAAATAAGTTTAACAAATTAAGACAAATTTATGAAGACTTCAAAAAGATATTGAGTGATATGACAGGAAATGGTTGGGATCCATTATTGGGCACTATCACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGGTATAGTTAAATTGCAAGTGCTTTTCTTTTCCATTTCTAATCATCTATCAAGTTATGGTTGATGTTATATATTGTTGTGTTATTTCTTATAGGCGAATAAGAGAGCTAAAAAGTTTTTTAAAAAATGGTTGCCCACATTATGCAAAGCTTATGAGGATTTTTGGACATACTACTGCTACAGGGGTAAATGTTTGCCCATCAACAAAACTTCCTTCAAATTCTGAAGATGAAAATGATGTTGGAAGTAATACGAACTTTGTTGGTGAAGAAAATGATAATGAAAAAAGTAGAAAACGAGTTCGAAGGAATAGGGACAAATTTAGTAGTTTCCTTTCATCATTTATAGATGTGTATGTTGAGAACTCAAAGAGAAAAAACGACATCCTTTAGAAAAGATCTTTTAGTTCTATCGCTAGTCAAGTTGATGAGGGTTAATCATCAAGGAAAAAAAGATGAAGTTGATGAAGAGCTGATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGATCTTGCTTTGAGAAAATTATTTTTGCTCATGCCTGATTCAAGGAAGAAAGATTTCATAAACAATATCTAGATGTTACTTAGGGGTGTTTTAGTTTTATGTCATTTTGTTGTATGGTTTTATGGTTTTATGTTATTTGAACATGAATATTATGATTGTGATTCCTTTTGGAGTTTATGTTTGAACATGGATATTTTATACTATTGTGGTGAGATGGATTTGATTTATGTTTCAAATTTCTTTTCTCATGTTTGATTTAAGGATATACTATTGAAGTGAGATGGATTTGATTCAAGACAATGACTTTGAGAATTTTGATTTTGACGACGATGATGATGTCATGTATATCCTTTTCAATTTATTGTACGTCGGCTTTCACAAGATACAATCTTCTAGACAACCATGTAGACCCTCTACACTAAAAGGTCATGACTATGTGATTGAGATGTTAAATGGAAACGATAGAAGATGTTTTGATTGTTTTAGGATGAAAATAGCAACATTCATAAGGTTTTGTGAAGATTTAAAATCTAAGACAGATTTGAAAACATCTAGATATCTCACCGTTCAAGAAAAAATGCTATATTTTTATTAATCATATCACATAATGAAAGCAATCGTATAGCAGCAGAAAGGTTTTAACATTCAGGTCAAACTATTTCTCGAGCTTTTAACATTGTTTTGAGGAAGGTTTGTAAGCTTGGAGTAGAAATTATTTGTCCATCCAACATGGACACTGTACCACCAGAGATCATATCAAAACCGAAATATTACCCTTTCTTTAAGGTAATACTTTTGAGTTAATGTTTTGATTTGTTTTTCAGGAAATATAATATTTTGAGAATATATTTATGTTTATGCTTATTTTTCAGGATTGTATCGGTGCTATTAATGGCACTCATATTGCTGCATGTATTCTCCAAAACGAACAACTACCATTTCGTGGAAGAAAAATTAACACAACGTGAAATATAATGTGTCTTTTCATTTGAGATTCACGTATGTCATGTTTGGTTGGGAAGGATTAGCCAATGATTCTCGCATACTCCTTGAATGTATCAAGTATCCTGAGAATAAATTTCCTATGCCTAAAAGAGGTATATAATTATGTGCTTTTATTATTTTAGTTCAACATTTGACTTCATGATAAGTTTTTATTTGTTTTATTTTATGCAGACCAGTACTATCTTGTCAATTCAGGATATTCAAATATGCATGGATTTTTGGCACCATTTTGCTGTCAAAGATATCATTTACGAGATTTTAGAGAAAGGAGACATCGTCCTCGAGGTAGAGAAGAAGTGTTTAACTATCAACATTCTTCGCTGCAAAATGTCATTAAACGTTGTTTTGGCATGTTGAAGGCTTGATTCCCTATTCTTAAACAAATGCCTCCTTACCCAGTCAACACACAAAAATATATACCAACAGCATGTTGC

mRNA sequence

ATGGCCCATATGTCACAAAAATCATTCGAAAAGCATTATGTTGATGAGATTGTTGAAATTGATGGATTGAAAAGTGAGGGACCATGGTCTGACAAGAATGAGGCTTTATTTGTTGACTTAATGGATGAAGAGGTTGCAAAGGGCAATCGACCAACCACAAAATTTACAAGGGCTAGAAATGGTTGGGATCCATTATTGGGCACTATCACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGGCGAATAAGAGAGCTAAAAAGTTTTTTAAAAAATGGTTGCCCACATTATGCAAAGCTTATGAGGATTTTTGGACATACTACTGCTACAGGGGATTGTATCGGTGCTATTAATGGCACTCATATTGCTGCATGTATTCTCCAAAACGAACAACTACCATTTCGTGGAAGAAAAATTAACACAACGTGAAATATAATGTGTCTTTTCATTTGAGATTCACGTATGTCATGTTTGGTTGGGAAGGATTAGCCAATGATTCTCGCATACTCCTTGAATGTATCAAGTATCCTGAGAATAAATTTCCTATGCCTAAAAGAGACCAGTACTATCTTGTCAATTCAGGATATTCAAATATGCATGGATTTTTGGCACCATTTTGCTGTCAAAGATATCATTTACGAGATTTTAGAGAAAGGAGACATCGTCCTCGAGGTAGAGAAGAAGTGTTTAACTATCAACATTCTTCGCTGCAAAATGTCATTAAACGTTGTTTTGGCATGTTGAAGGCTTGATTCCCTATTCTTAAACAAATGCCTCCTTACCCAGTCAACACACAAAAATATATACCAACAGCATGTTGC

Coding sequence (CDS)

ATGGCCCATATGTCACAAAAATCATTCGAAAAGCATTATGTTGATGAGATTGTTGAAATTGATGGATTGAAAAGTGAGGGACCATGGTCTGACAAGAATGAGGCTTTATTTGTTGACTTAATGGATGAAGAGGTTGCAAAGGGCAATCGACCAACCACAAAATTTACAAGGGCTAGAAATGGTTGGGATCCATTATTGGGCACTATCACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGGCGAATAAGAGAGCTAAAAAGTTTTTTAAAAAATGGTTGCCCACATTATGCAAAGCTTATGAGGATTTTTGGACATACTACTGCTACAGGGGATTGTATCGGTGCTATTAA

Protein sequence

MAHMSQKSFEKHYVDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRARNGWDPLLGTITLEEEQWNDLFKANKRAKKFFKKWLPTLCKAYEDFWTYYCYRGLYRCY
BLAST of Lsi06G006620 vs. NCBI nr
Match: gi|659095125|ref|XP_008448411.1| (PREDICTED: uncharacterized protein LOC103490615 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1

Query: 4  MSQKSFEKHYVDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRARNGWD 63
          MSQKS E+ YV+++VEIDGLK EGPWS+K+EALFVDL++EEVAKGNRPTT FT+    W+
Sbjct: 1  MSQKSTEQLYVNDVVEIDGLKGEGPWSNKSEALFVDLINEEVAKGNRPTTTFTKI--SWN 60

Query: 64 PLLGTITLE------EEQWNDLFKANKRAKKFFKKWL 95
           +   +          +Q  + F   ++  K FKK L
Sbjct: 61 YMRSQLNASTGYNYYHDQLKNKFNKLRQIYKDFKKIL 95

BLAST of Lsi06G006620 vs. NCBI nr
Match: gi|449459522|ref|XP_004147495.1| (PREDICTED: uncharacterized protein LOC101212009 isoform X1 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 1

Query: 1   MAHMSQKSFEK-HYVDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRAR 60
           +A +  + F K ++++++ +ID  + +GPWS KNE +F++LM++EVAKGNRPTT FT+  
Sbjct: 18  LAPLPTQGFMKINHIEDVNQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTS 77

Query: 61  --------------------------------------------NGWDPLLGTITLEEEQ 96
                                                        GWDP+LGTITL E Q
Sbjct: 78  WTYIKEQLYVKTGYAYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQ 137

BLAST of Lsi06G006620 vs. NCBI nr
Match: gi|778685560|ref|XP_011652236.1| (PREDICTED: uncharacterized protein LOC101212009 isoform X2 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-15
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 1

Query: 12  HYVDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRAR------------ 71
           ++++++ +ID  + +GPWS KNE +F++LM++EVAKGNRPTT FT+              
Sbjct: 4   NHIEDVNQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLYVKT 63

Query: 72  --------------------------------NGWDPLLGTITLEEEQWNDLFKANKRAK 96
                                            GWDP+LGTITL E QW +L K NK+AK
Sbjct: 64  GYAYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQWTNLIKVNKKAK 123

BLAST of Lsi06G006620 vs. NCBI nr
Match: gi|659085415|ref|XP_008443406.1| (PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.0e-15
Identity = 49/135 (36.30%), Postives = 66/135 (48.89%), Query Frame = 1

Query: 5   SQKSFEKHYVDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRAR----- 64
           SQ   + + ++++ +ID  + +GPWS KNE +F++LM++EVAKGNRPTT FT+       
Sbjct: 23  SQGFMKINRIEDVHQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIK 82

Query: 65  ---------------------------------------NGWDPLLGTITLEEEQWNDLF 96
                                                   GWDP+LGTITL E QW +L 
Sbjct: 83  EQLYVKTGYAYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQWTNLI 142

BLAST of Lsi06G006620 vs. NCBI nr
Match: gi|659085417|ref|XP_008443408.1| (PREDICTED: uncharacterized protein LOC103487000 isoform X2 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 1

Query: 14  VDEIVEIDGLKSEGPWSDKNEALFVDLMDEEVAKGNRPTTKFTRAR-------------- 73
           ++++ +ID  + +GPWS KNE +F++LM++EVAKGNRPTT FT+                
Sbjct: 6   IEDVHQIDVSRFDGPWSFKNETIFINLMEDEVAKGNRPTTTFTKTSWTYIKEQLYVKTGY 65

Query: 74  ------------------------------NGWDPLLGTITLEEEQWNDLFKANKRAKKF 96
                                          GWDP+LGTITL E QW +L K NK AKKF
Sbjct: 66  AYSHEQLKNKYNSLRHRYKEFKKLLSDINGKGWDPVLGTITLGEAQWTNLIKVNKNAKKF 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659095125|ref|XP_008448411.1|2.1e-1550.52PREDICTED: uncharacterized protein LOC103490615 [Cucumis melo][more]
gi|449459522|ref|XP_004147495.1|2.1e-1535.71PREDICTED: uncharacterized protein LOC101212009 isoform X1 [Cucumis sativus][more]
gi|778685560|ref|XP_011652236.1|2.7e-1536.72PREDICTED: uncharacterized protein LOC101212009 isoform X2 [Cucumis sativus][more]
gi|659085415|ref|XP_008443406.1|8.0e-1536.30PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo][more]
gi|659085417|ref|XP_008443408.1|1.0e-1437.30PREDICTED: uncharacterized protein LOC103487000 isoform X2 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006620.1Lsi06G006620.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None