Lsi06G006380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chaperone DnaJ domain protein
Location	chr06 : 9310704 .. 9311463 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACTCAACAACTAAAAATATATTTTTCCCCCGTAAAAAATGATTACAAAGAAAGGGGGAAGTTCGATCCCAAAGGCTTAACCTTGTAGTAAAGTCTTAAGACAACCTAAATCGCCCGAATTGGATTGATTGTGTATTCGAATTTCGGGTATCGGATTTTCCGAGTTTCTTACAGTCCATCCCTTCCCCTTTCTTCAACCATACAACTTCTTCTCAGGTACTCCAACTGAGTTTGATCCGATAACTTCATAATTCGGCAAAAAGAGGATTAATTTCGACTCTCCAATTCAAGTGGAGGCTGAAACAGGACGCTGCTTTTTATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGTCTCTCTCGCTCTCTTTCTCTCTTTCTCCCAATTGTTTATCCCCAAGCATCGTTTTCTTGTCATGTATTGGAGGTGTATGACATTAATTCTAGTCAAAGAGCCATTAGGGTTTGTTGGGGTTTTTAGTTCTTTACCTAGGAATGTGAATTTGTTTTATGTAATTTTTCTGTTATAGTTTCTTGATCGTGTTTTTGGTTTTCTTGTGCCTCCTGGGAAACGAGAACCTGTAGTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

mRNA sequence

CAAAACTCAACAACTAAAAATATATTTTTCCCCCGTAAAAAATGATTACAAAGAAAGGGGGAAGTTCGATCCCAAAGGCTTAACCTTGTAGTAAAGTCTTAAGACAACCTAAATCGCCCGAATTGGATTGATTGTGTATTCGAATTTCGGGTATCGGATTTTCCGAGTTTCTTACAGTCCATCCCTTCCCCTTTCTTCAACCATACAACTTCTTCTCAGGTACTCCAACTGAGTTTGATCCGATAACTTCATAATTCGGCAAAAAGAGGATTAATTTCGACTCTCCAATTCAAGTGGAGGCTGAAACAGGACGCTGCTTTTTATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGAATGTGAATTTGTTTTATTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

Coding sequence (CDS)

ATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGAATGTGAATTTGTTTTATTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

Protein sequence

MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLFYWYVYGMLCKPLRYVRLDSFFPEKSAPLAQGPRF

Homology

[Close]

BLAST of Lsi06G006380 vs. TrEMBL
Match: A0A0A0LXW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637960 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-09
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

[Close]

BLAST of Lsi06G006380 vs. NCBI nr
Match: gi|659098731|ref|XP_008450275.1| (PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-09
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

[Close]

BLAST of Lsi06G006380 vs. NCBI nr
Match: gi|449442623|ref|XP_004139080.1| (PREDICTED: dnaJ homolog subfamily C member 8 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-09
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

The following BLAST results are available for this feature:

BLAST of Lsi06G006380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G006380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXW6_CUCSA	4.9e-09	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637960 PE=4 SV=1	[more]

BLAST of Lsi06G006380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G006380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098731\|ref\|XP_008450275.1\|	7.0e-09	85.00	PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo]	[more]
gi\|449442623\|ref\|XP_004139080.1\|	7.0e-09	85.00	PREDICTED: dnaJ homolog subfamily C member 8 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006380.1	Lsi06G006380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006380	Csa1G637960	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006380	CSPI01G31540	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006380	Cucsa.356010	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006380	CmaCh10G008600	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006380	CmaCh11G009080	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006380	CmoCh10G009000	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006380	CmoCh11G009250	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006380	MELO3C015043	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G006380	ClCG03G012000	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006380	MELO3C015043.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G006380	Cla97C03G062190	Watermelon (97103) v2	lsiwmbB365
Lsi06G006380	Bhi02G001180	Wax gourd	lsiwgoB521
Lsi06G006380	Cp4.1LG18g02210	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006380	CsGy1G030700	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006380	Carg22694	Silver-seed gourd	carlsiB485
Lsi06G006380	Carg17828	Silver-seed gourd	carlsiB886
Lsi06G006380	CsaV3_1G043920	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006380	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006380	Watermelon (97103) v1	lsiwmB393