Lsi06G006100 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G006100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 8459637 .. 8459927 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACAGACGACTATGGCCAGTTGAAGAAAAAGTATCAAGAAATGTCAGAAGATTTTGCTATATGGAGGGACGAGTATAACATATTGAGGCAGAATTATGACAGCGTCAGAGGACAGATAGAGCAAGGAGCCGAGAAGCTAAGACAGATGGCAAGGATGGCAGATCGGTTCGCATTACAAGCTACAACCCTCCGACAAGACATCATACCTACGCGGCCTGGCAGTAGCGAGTTATCTCGTTTTCTAGGGATCATAGGGGACCTAGGGCGTTTTGGGTGCTATCACTAG

mRNA sequence

ATGGTAACAGACGACTATGGCCAGTTGAAGAAAAAGTATCAAGAAATGTCAGAAGATTTTGCTATATGGAGGGACGAGTATAACATATTGAGGCAGAATTATGACAGCGTCAGAGGACAGATAGAGCAAGGAGCCGAGAAGCTAAGACAGATGGCAAGGATGGCAGATCGGTTCGCATTACAAGCTACAACCCTCCGACAAGACATCATACCTACGCGGCCTGGCAGTAGCGAGTTATCTCGTTTTCTAGGGATCATAGGGGACCTAGGGCGTTTTGGGTGCTATCACTAG

Coding sequence (CDS)

ATGGTAACAGACGACTATGGCCAGTTGAAGAAAAAGTATCAAGAAATGTCAGAAGATTTTGCTATATGGAGGGACGAGTATAACATATTGAGGCAGAATTATGACAGCGTCAGAGGACAGATAGAGCAAGGAGCCGAGAAGCTAAGACAGATGGCAAGGATGGCAGATCGGTTCGCATTACAAGCTACAACCCTCCGACAAGACATCATACCTACGCGGCCTGGCAGTAGCGAGTTATCTCGTTTTCTAGGGATCATAGGGGACCTAGGGCGTTTTGGGTGCTATCACTAG

Protein sequence

MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGDLGRFGCYH
Homology
[Close]
BLAST of Lsi06G006100 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 8.5e-15
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1 

Query: 1   MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFAL 60
           ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD    ++E+GAEKLRQMA +AD+F++
Sbjct: 166 VITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSV 225

Query: 61  QATTLRQ 68
           QA TLRQ
Sbjct: 226 QARTLRQ 232

The following BLAST results are available for this feature:
BLAST of Lsi06G006100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G006100 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi06G006100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G006100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128749|ref|XP_008464352.1|8.5e-1561.19PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006100.1Lsi06G006100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G006100Cucumber (Gy14) v1cgylsiB573
Lsi06G006100Cucurbita maxima (Rimu)cmalsiB073
Lsi06G006100Cucurbita maxima (Rimu)cmalsiB128
Lsi06G006100Cucurbita moschata (Rifu)cmolsiB059
Lsi06G006100Cucurbita moschata (Rifu)cmolsiB118
Lsi06G006100Cucurbita pepo (Zucchini)cpelsiB299
Lsi06G006100Cucurbita pepo (Zucchini)cpelsiB563
Lsi06G006100Wild cucumber (PI 183967)cpilsiB059
Lsi06G006100Cucumber (Chinese Long) v2culsiB058
Lsi06G006100Melon (DHL92) v3.5.1lsimeB396
Lsi06G006100Watermelon (Charleston Gray)lsiwcgB364
Lsi06G006100Watermelon (97103) v1lsiwmB397
Lsi06G006100Cucumber (Gy14) v2cgyblsiB055
Lsi06G006100Melon (DHL92) v3.6.1lsimedB418
Lsi06G006100Silver-seed gourdcarlsiB807
Lsi06G006100Silver-seed gourdcarlsiB886
Lsi06G006100Cucumber (Chinese Long) v3cuclsiB068
Lsi06G006100Watermelon (97103) v2lsiwmbB365
Lsi06G006100Wax gourdlsiwgoB520